RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 GALR2O43603 387 aaPredicted RBP7.65□□□□□ -1.19
VPS13A-207ENST00000419472 ATN1P54259 1190 aaPredicted RBP7.65□□□□□ -1.19
VPS13A-207ENST00000419472 PCDHGC3Q9UN70 934 aa7.65□□□□□ -1.19
VPS13A-207ENST00000419472 SIRT1Q96EB6 747 aa7.64□□□□□ -1.19
VPS13A-207ENST00000419472 PPP1R1BQ9UD71 204 aaPredicted RBP7.64□□□□□ -1.19
VPS13A-207ENST00000419472 ATP9BO43861 1147 aa7.63□□□□□ -1.19
VPS13A-207ENST00000419472 ZBTB3Q9H5J0 574 aa7.63□□□□□ -1.19
VPS13A-207ENST00000419472 SEMA3FQ13275 785 aa7.63□□□□□ -1.19
VPS13A-207ENST00000419472 CDCA7LQ96GN5 454 aa7.63□□□□□ -1.19
VPS13A-207ENST00000419472 NOVA2Q9UNW9 492 aaKnown RBP7.63□□□□□ -1.19
VPS13A-207ENST00000419472 SSFA2P28290 1259 aa7.62□□□□□ -1.19
VPS13A-207ENST00000419472 GJA5P36382 358 aa7.62□□□□□ -1.19
VPS13A-207ENST00000419472 PRPF38BQ5VTL8 546 aaKnown RBP7.62□□□□□ -1.19
VPS13A-207ENST00000419472 B4GALNT3Q6L9W6 998 aa7.62□□□□□ -1.19
VPS13A-207ENST00000419472 SOWAHDA6NJG2 315 aa7.62□□□□□ -1.19
VPS13A-207ENST00000419472 DRC1Q96MC2 740 aa7.62□□□□□ -1.19
VPS13A-207ENST00000419472 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.61□□□□□ -1.19
VPS13A-207ENST00000419472 ANKRD33BA6NCL7 494 aa7.61□□□□□ -1.19
VPS13A-207ENST00000419472 MARSP56192 900 aaKnown RBP7.61□□□□□ -1.19
VPS13A-207ENST00000419472 PRSS12P56730 875 aa7.61□□□□□ -1.19
VPS13A-207ENST00000419472 CERKQ8TCT0 537 aa7.61□□□□□ -1.19
VPS13A-207ENST00000419472 EYA1Q99502 592 aa7.61□□□□□ -1.19
VPS13A-207ENST00000419472 SCRIBQ14160 1630 aa7.61□□□□□ -1.19
VPS13A-207ENST00000419472 NPAS4Q8IUM7 802 aa7.6□□□□□ -1.19
VPS13A-207ENST00000419472 DEPDC4Q8N2C3 294 aa7.6□□□□□ -1.19
VPS13A-207ENST00000419472 SREK1Q8WXA9 508 aaKnown RBP7.6□□□□□ -1.19
VPS13A-207ENST00000419472 CFAP99D6REC4 459 aa7.6□□□□□ -1.19
VPS13A-207ENST00000419472 CRTC2Q53ET0 693 aaPredicted RBP7.6□□□□□ -1.19
VPS13A-207ENST00000419472 SULF1Q8IWU6 871 aa7.6□□□□□ -1.19
VPS13A-207ENST00000419472 JPH4Q96JJ6 628 aa7.6□□□□□ -1.19
VPS13A-207ENST00000419472 RBM27Q9P2N5 1060 aaKnown RBP7.6□□□□□ -1.19
VPS13A-207ENST00000419472 KDM4AO75164 1064 aa7.59□□□□□ -1.19
VPS13A-207ENST00000419472 FDX1P10109 184 aa7.59□□□□□ -1.19
VPS13A-207ENST00000419472 NR6A1Q15406 480 aa7.59□□□□□ -1.19
VPS13A-207ENST00000419472 HOXA2O43364 376 aa7.59□□□□□ -1.19
VPS13A-207ENST00000419472 ELOAQ14241 798 aaKnown RBP7.59□□□□□ -1.19
VPS13A-207ENST00000419472 BIN2Q9UBW5 565 aaPredicted RBP7.59□□□□□ -1.19
VPS13A-207ENST00000419472 ARID4AP29374 1257 aaPredicted RBP7.59□□□□□ -1.2
VPS13A-207ENST00000419472 ERCC3P19447 782 aa7.58□□□□□ -1.2
VPS13A-207ENST00000419472 RDH13Q8NBN7 331 aa7.58□□□□□ -1.2
VPS13A-207ENST00000419472 ADAM33Q9BZ11 813 aa7.58□□□□□ -1.2
VPS13A-207ENST00000419472 TTBK1Q5TCY1 1321 aaPredicted RBP7.58□□□□□ -1.2
VPS13A-207ENST00000419472 FOSBP53539 338 aa7.58□□□□□ -1.2
VPS13A-207ENST00000419472 FAM69CQ0P6D2 419 aa7.58□□□□□ -1.2
VPS13A-207ENST00000419472 SPATA32Q96LK8 384 aa7.58□□□□□ -1.2
VPS13A-207ENST00000419472 SLC34A2O95436 690 aa7.57□□□□□ -1.2
VPS13A-207ENST00000419472 RECKO95980 971 aa7.57□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L3A6NCW0 530 aa7.57□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L4A6NCW7 530 aa7.57□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L2Q6R6M4 530 aa7.57□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L1Q7RTZ2 530 aa7.57□□□□□ -1.2
VPS13A-207ENST00000419472 HELBQ8NG08 1087 aaPredicted RBP7.57□□□□□ -1.2
VPS13A-207ENST00000419472 SOX11P35716 441 aa7.56□□□□□ -1.2
VPS13A-207ENST00000419472 NUDT18Q6ZVK8 323 aa7.56□□□□□ -1.2
VPS13A-207ENST00000419472 PER1O15534 1290 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-207ENST00000419472 ZNF454Q8N9F8 522 aa7.56□□□□□ -1.2
VPS13A-207ENST00000419472 C7P10643 843 aa7.55□□□□□ -1.2
VPS13A-207ENST00000419472 C8orf37Q96NL8 207 aa7.55□□□□□ -1.2
VPS13A-207ENST00000419472 TSKSQ9UJT2 592 aa7.55□□□□□ -1.2
VPS13A-207ENST00000419472 KDM4FA0A1W2PPD8 638 aa7.55□□□□□ -1.2
VPS13A-207ENST00000419472 PLCG2P16885 1265 aa7.55□□□□□ -1.2
VPS13A-207ENST00000419472 MTMR2Q13614 643 aa7.55□□□□□ -1.2
VPS13A-207ENST00000419472 NAALADL2Q58DX5 795 aa7.55□□□□□ -1.2
VPS13A-207ENST00000419472 PCDHGA4Q9Y5G9 962 aa7.55□□□□□ -1.2
VPS13A-207ENST00000419472 SYMPKQ92797 1274 aaKnown RBP7.54□□□□□ -1.2
VPS13A-207ENST00000419472 ZDHHC16Q969W1 377 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 TMEM134Q9H6X4 195 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L15C9J2P7 530 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L10C9JJH3 530 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L13C9JLJ4 530 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L12C9JPN9 530 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L11C9JVI0 530 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L21D6R901 530 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L18D6R9N7 530 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L22D6RA61 530 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L17D6RBQ6 530 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L19D6RCP7 530 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L20D6RJB6 530 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 ZC3H6P61129 1189 aaKnown RBP7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L24Q0WX57 530 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 CHRDL2Q6WN34 429 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 CWC22Q9HCG8 908 aaKnown RBP7.54□□□□□ -1.2
VPS13A-207ENST00000419472 COL9A1P20849 921 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 FAM174AQ8TBP5 190 aa7.54□□□□□ -1.2
VPS13A-207ENST00000419472 USP17L5A8MUK1 530 aa7.53□□□□□ -1.2
VPS13A-207ENST00000419472 SMAPO00193 183 aa7.53□□□□□ -1.2
VPS13A-207ENST00000419472 DHX37Q8IY37 1157 aaKnown RBP7.53□□□□□ -1.2
VPS13A-207ENST00000419472 POLR3GLQ9BT43 218 aa7.53□□□□□ -1.2
VPS13A-207ENST00000419472 ANO2Q9NQ90 1003 aa7.53□□□□□ -1.2
VPS13A-207ENST00000419472 DNAJB2P25686 324 aa7.53□□□□□ -1.2
VPS13A-207ENST00000419472 TSNAXIP1Q2TAA8 658 aa7.53□□□□□ -1.2
VPS13A-207ENST00000419472 SKIP12755 728 aa7.52□□□□□ -1.21
VPS13A-207ENST00000419472 COLQQ9Y215 455 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-207ENST00000419472 FBXO45P0C2W1 286 aa7.52□□□□□ -1.21
VPS13A-207ENST00000419472 ATP2B4P23634 1241 aa7.52□□□□□ -1.21
VPS13A-207ENST00000419472 EIF4G2P78344 907 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS13A-207ENST00000419472 C9orf131Q5VYM1 1079 aa7.52□□□□□ -1.21
VPS13A-207ENST00000419472 GIMAP6Q6P9H5 292 aa7.52□□□□□ -1.21
VPS13A-207ENST00000419472 FBXO33Q7Z6M2 555 aa7.52□□□□□ -1.21
VPS13A-207ENST00000419472 ATMINO43313 823 aaPredicted RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms