RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 PLA2G2CQ5R387 149 aa8.09□□□□□ -1.11
HMGB3P20-201ENST00000417997 LIAT1Q6ZQX7 453 aa8.09□□□□□ -1.11
HMGB3P20-201ENST00000417997 SYMPKQ92797 1274 aaKnown RBP8.09□□□□□ -1.11
HMGB3P20-201ENST00000417997 C6orf229H3BNL8 230 aa8.08□□□□□ -1.12
HMGB3P20-201ENST00000417997 MS4A1P11836 297 aa8.08□□□□□ -1.12
HMGB3P20-201ENST00000417997 Q6ZNB5 142 aa8.08□□□□□ -1.12
HMGB3P20-201ENST00000417997 EMID1Q96A84 441 aaPredicted RBP8.08□□□□□ -1.12
HMGB3P20-201ENST00000417997 PDZRN3Q9UPQ7 1066 aa8.08□□□□□ -1.12
HMGB3P20-201ENST00000417997 MOXD2PA6NHM9 499 aa8.07□□□□□ -1.12
HMGB3P20-201ENST00000417997 SPRYD7Q5W111 196 aa8.07□□□□□ -1.12
HMGB3P20-201ENST00000417997 TBC1D2Q9BYX2 928 aa8.07□□□□□ -1.12
HMGB3P20-201ENST00000417997 LAPTM4AQ15012 233 aa8.06□□□□□ -1.12
HMGB3P20-201ENST00000417997 ZNF697Q5TEC3 545 aa8.06□□□□□ -1.12
HMGB3P20-201ENST00000417997 CCDC24Q8N4L8 307 aa8.06□□□□□ -1.12
HMGB3P20-201ENST00000417997 ZBTB24O43167 697 aaPredicted RBP8.05□□□□□ -1.12
HMGB3P20-201ENST00000417997 ZNF598Q86UK7 904 aaKnown RBP8.05□□□□□ -1.12
HMGB3P20-201ENST00000417997 PCDHGC3Q9UN70 934 aa8.05□□□□□ -1.12
HMGB3P20-201ENST00000417997 DIXDC1Q155Q3 683 aa8.04□□□□□ -1.12
HMGB3P20-201ENST00000417997 TNFRSF10AO00220 468 aa8.03□□□□□ -1.12
HMGB3P20-201ENST00000417997 DXOO77932 396 aaKnown RBP8.03□□□□□ -1.12
HMGB3P20-201ENST00000417997 CD2BP2O95400 341 aaKnown RBP8.03□□□□□ -1.12
HMGB3P20-201ENST00000417997 MMP16P51512 607 aa8.03□□□□□ -1.12
HMGB3P20-201ENST00000417997 FOXC1Q12948 553 aa8.03□□□□□ -1.12
HMGB3P20-201ENST00000417997 RETREG3Q86VR2 466 aa8.03□□□□□ -1.12
HMGB3P20-201ENST00000417997 NRG2O14511 850 aaPredicted RBP8.02□□□□□ -1.13
HMGB3P20-201ENST00000417997 RPIAP49247 311 aa8.02□□□□□ -1.13
HMGB3P20-201ENST00000417997 CSPP1Q1MSJ5 1256 aa8.02□□□□□ -1.13
HMGB3P20-201ENST00000417997 JUNDP17535 347 aa8.01□□□□□ -1.13
HMGB3P20-201ENST00000417997 RSBN1LQ6PCB5 846 aaPredicted RBP8.01□□□□□ -1.13
HMGB3P20-201ENST00000417997 MTMR2Q13614 643 aa8□□□□□ -1.13
HMGB3P20-201ENST00000417997 TRIM67Q6ZTA4 783 aa8□□□□□ -1.13
HMGB3P20-201ENST00000417997 RIC3Q7Z5B4 369 aa8□□□□□ -1.13
HMGB3P20-201ENST00000417997 PRR7Q8TB68 274 aa7.99□□□□□ -1.13
HMGB3P20-201ENST00000417997 GPBP1L1Q9HC44 474 aaPredicted RBP7.99□□□□□ -1.13
HMGB3P20-201ENST00000417997 PCDHB15Q9Y5E8 787 aa7.99□□□□□ -1.13
HMGB3P20-201ENST00000417997 SPTLC1O15269 473 aa7.98□□□□□ -1.13
HMGB3P20-201ENST00000417997 NUDT12Q9BQG2 462 aa7.98□□□□□ -1.13
HMGB3P20-201ENST00000417997 ATP1B4Q9UN42 357 aaPredicted RBP7.98□□□□□ -1.13
HMGB3P20-201ENST00000417997 SPDYE5A6NIY4 337 aa7.97□□□□□ -1.13
HMGB3P20-201ENST00000417997 TRIM32Q13049 653 aa7.97□□□□□ -1.13
HMGB3P20-201ENST00000417997 MYSM1Q5VVJ2 828 aa7.97□□□□□ -1.13
HMGB3P20-201ENST00000417997 KDM4CQ9H3R0 1056 aa7.97□□□□□ -1.13
HMGB3P20-201ENST00000417997 NUTM2BA6NNL0 878 aaPredicted RBP7.96□□□□□ -1.14
HMGB3P20-201ENST00000417997 NUTM2EB1AL46 878 aaPredicted RBP7.96□□□□□ -1.14
HMGB3P20-201ENST00000417997 GJA5P36382 358 aa7.96□□□□□ -1.14
HMGB3P20-201ENST00000417997 PKDCCQ504Y2 493 aa7.96□□□□□ -1.14
HMGB3P20-201ENST00000417997 NUTM2DQ5VT03 806 aaPredicted RBP7.96□□□□□ -1.14
HMGB3P20-201ENST00000417997 NUTM2AQ8IVF1 878 aaPredicted RBP7.96□□□□□ -1.14
HMGB3P20-201ENST00000417997 CABLES1Q8TDN4 633 aa7.96□□□□□ -1.14
HMGB3P20-201ENST00000417997 TSC1Q92574 1164 aa7.96□□□□□ -1.14
HMGB3P20-201ENST00000417997 ZBTB3Q9H5J0 574 aa7.96□□□□□ -1.14
HMGB3P20-201ENST00000417997 POLR3EQ9NVU0 708 aa7.96□□□□□ -1.14
HMGB3P20-201ENST00000417997 LIMD1Q9UGP4 676 aa7.96□□□□□ -1.14
HMGB3P20-201ENST00000417997 FAM187AA6NFU0 413 aa7.95□□□□□ -1.14
HMGB3P20-201ENST00000417997 GDF9O60383 454 aa7.95□□□□□ -1.14
HMGB3P20-201ENST00000417997 HRCP23327 699 aa7.95□□□□□ -1.14
HMGB3P20-201ENST00000417997 PRR20EP86478 221 aa7.95□□□□□ -1.14
HMGB3P20-201ENST00000417997 PRR20CP86479 221 aa7.95□□□□□ -1.14
HMGB3P20-201ENST00000417997 PRR20DP86480 221 aa7.95□□□□□ -1.14
HMGB3P20-201ENST00000417997 PRR20BP86481 221 aa7.95□□□□□ -1.14
HMGB3P20-201ENST00000417997 PRR20AP86496 221 aa7.95□□□□□ -1.14
HMGB3P20-201ENST00000417997 TRAF7Q6Q0C0 670 aa7.95□□□□□ -1.14
HMGB3P20-201ENST00000417997 RSPH6AQ9H0K4 717 aa7.95□□□□□ -1.14
HMGB3P20-201ENST00000417997 PKD2L1Q9P0L9 805 aa7.95□□□□□ -1.14
HMGB3P20-201ENST00000417997 CCNYL3P0C7X3 344 aa7.94□□□□□ -1.14
HMGB3P20-201ENST00000417997 CYP4X1Q8N118 509 aa7.94□□□□□ -1.14
HMGB3P20-201ENST00000417997 CLK2P49760 499 aaKnown RBP7.93□□□□□ -1.14
HMGB3P20-201ENST00000417997 FAM117AQ9C073 453 aa7.93□□□□□ -1.14
HMGB3P20-201ENST00000417997 TTC24A2A3L6 582 aaPredicted RBP7.92□□□□□ -1.14
HMGB3P20-201ENST00000417997 CFAP99D6REC4 459 aa7.92□□□□□ -1.14
HMGB3P20-201ENST00000417997 CTHP32929 405 aa7.92□□□□□ -1.14
HMGB3P20-201ENST00000417997 QPCTQ16769 361 aa7.92□□□□□ -1.14
HMGB3P20-201ENST00000417997 PTPRNQ16849 979 aa7.92□□□□□ -1.14
HMGB3P20-201ENST00000417997 TPRNQ4KMQ1 711 aa7.92□□□□□ -1.14
HMGB3P20-201ENST00000417997 PRPF38BQ5VTL8 546 aaKnown RBP7.92□□□□□ -1.14
HMGB3P20-201ENST00000417997 PTCRAQ6ISU1 281 aaPredicted RBP7.92□□□□□ -1.14
HMGB3P20-201ENST00000417997 NEUROD2Q15784 382 aa7.91□□□□□ -1.14
HMGB3P20-201ENST00000417997 DDRGK1Q96HY6 314 aa7.91□□□□□ -1.14
HMGB3P20-201ENST00000417997 WNT7AO00755 349 aa7.9□□□□□ -1.14
HMGB3P20-201ENST00000417997 LCE2BO14633 110 aa7.9□□□□□ -1.14
HMGB3P20-201ENST00000417997 DGAT1O75907 488 aa7.9□□□□□ -1.14
HMGB3P20-201ENST00000417997 DESI1Q6ICB0 168 aa7.9□□□□□ -1.14
HMGB3P20-201ENST00000417997 KCNH2Q12809 1159 aa7.89□□□□□ -1.15
HMGB3P20-201ENST00000417997 LINC01559Q495D7 138 aa7.89□□□□□ -1.15
HMGB3P20-201ENST00000417997 RC3H1Q5TC82 1133 aaKnown RBP7.89□□□□□ -1.15
HMGB3P20-201ENST00000417997 LYPD8Q6UX82 237 aa7.89□□□□□ -1.15
HMGB3P20-201ENST00000417997 MRGPRX2Q96LB1 330 aa7.89□□□□□ -1.15
HMGB3P20-201ENST00000417997 UNC93B1Q9H1C4 597 aa7.89□□□□□ -1.15
HMGB3P20-201ENST00000417997 EVA1BQ9NVM1 165 aa7.89□□□□□ -1.15
HMGB3P20-201ENST00000417997 LILRB3O75022 631 aa7.88□□□□□ -1.15
HMGB3P20-201ENST00000417997 WNT7BP56706 349 aa7.88□□□□□ -1.15
HMGB3P20-201ENST00000417997 SKOR1P84550 965 aa7.88□□□□□ -1.15
HMGB3P20-201ENST00000417997 RTL5Q5HYW3 569 aaPredicted RBP7.88□□□□□ -1.15
HMGB3P20-201ENST00000417997 EHBP1Q8NDI1 1231 aa7.87□□□□□ -1.15
HMGB3P20-201ENST00000417997 HELBQ8NG08 1087 aaPredicted RBP7.87□□□□□ -1.15
HMGB3P20-201ENST00000417997 TOR4AQ9NXH8 423 aa7.87□□□□□ -1.15
HMGB3P20-201ENST00000417997 PLEKHG3A1L390 1219 aa7.86□□□□□ -1.15
HMGB3P20-201ENST00000417997 MYT1Q01538 1121 aa7.86□□□□□ -1.15
HMGB3P20-201ENST00000417997 SKIV2LQ15477 1246 aaKnown RBP7.86□□□□□ -1.15
HMGB3P20-201ENST00000417997 TUSC1Q2TAM9 212 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms