RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 PTCH1Q13635 1447 aa11.9□□□□□ -0.51
TRIM48-201ENST00000417545 CENPJQ9HC77 1338 aaPredicted RBP11.89□□□□□ -0.51
TRIM48-201ENST00000417545 PRAM1Q96QH2 718 aa11.88□□□□□ -0.51
TRIM48-201ENST00000417545 TECPR2O15040 1411 aa11.88□□□□□ -0.51
TRIM48-201ENST00000417545 FAM135BQ49AJ0 1406 aa11.87□□□□□ -0.51
TRIM48-201ENST00000417545 ROBO2Q9HCK4 1378 aa11.86□□□□□ -0.51
TRIM48-201ENST00000417545 MINK1Q8N4C8 1332 aaPredicted RBP11.86□□□□□ -0.51
TRIM48-201ENST00000417545 WAPLQ7Z5K2 1190 aa11.86□□□□□ -0.51
TRIM48-201ENST00000417545 TMEM94Q12767 1356 aa11.85□□□□□ -0.51
TRIM48-201ENST00000417545 SLC24A1O60721 1099 aa11.85□□□□□ -0.51
TRIM48-201ENST00000417545 HSPA5P11021 654 aaKnown RBP11.85□□□□□ -0.51
TRIM48-201ENST00000417545 NALCNQ8IZF0 1738 aa11.84□□□□□ -0.51
TRIM48-201ENST00000417545 MSH6P52701 1360 aa11.84□□□□□ -0.51
TRIM48-201ENST00000417545 ST20-MTHFSA0A0A6YYL1 179 aa11.84□□□□□ -0.51
TRIM48-201ENST00000417545 SIRT1Q96EB6 747 aa11.84□□□□□ -0.51
TRIM48-201ENST00000417545 RBM33Q96EV2 1170 aaKnown RBP11.84□□□□□ -0.51
TRIM48-201ENST00000417545 LRRC7Q96NW7 1537 aa11.83□□□□□ -0.51
TRIM48-201ENST00000417545 PLEKHH1Q9ULM0 1364 aa11.83□□□□□ -0.52
TRIM48-201ENST00000417545 HIRIP3Q9BW71 556 aaPredicted RBP11.83□□□□□ -0.52
TRIM48-201ENST00000417545 ADGRL3Q9HAR2 1447 aa11.82□□□□□ -0.52
TRIM48-201ENST00000417545 EVC2Q86UK5 1308 aa11.82□□□□□ -0.52
TRIM48-201ENST00000417545 ATF3P18847 181 aa11.82□□□□□ -0.52
TRIM48-201ENST00000417545 TMF1P82094 1093 aa11.82□□□□□ -0.52
TRIM48-201ENST00000417545 POLR3GLQ9BT43 218 aa11.82□□□□□ -0.52
TRIM48-201ENST00000417545 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.82□□□□□ -0.52
TRIM48-201ENST00000417545 LTBP4Q8N2S1 1624 aa11.82□□□□□ -0.52
TRIM48-201ENST00000417545 XIRP1Q702N8 1843 aaKnown RBP11.81□□□□□ -0.52
TRIM48-201ENST00000417545 SRPK2P78362 688 aaKnown RBP11.81□□□□□ -0.52
TRIM48-201ENST00000417545 NCOA3Q9Y6Q9 1424 aa11.81□□□□□ -0.52
TRIM48-201ENST00000417545 ADGRB2O60241 1585 aa11.81□□□□□ -0.52
TRIM48-201ENST00000417545 CDCA8Q53HL2 280 aa11.8□□□□□ -0.52
TRIM48-201ENST00000417545 CDC42BPGQ6DT37 1551 aa11.8□□□□□ -0.52
TRIM48-201ENST00000417545 SBNO2Q9Y2G9 1366 aa11.79□□□□□ -0.52
TRIM48-201ENST00000417545 ITSN1Q15811 1721 aa11.78□□□□□ -0.52
TRIM48-201ENST00000417545 FMN2Q9NZ56 1722 aa11.78□□□□□ -0.52
TRIM48-201ENST00000417545 C19orf44Q9H6X5 657 aa11.78□□□□□ -0.52
TRIM48-201ENST00000417545 DCCP43146 1447 aa11.78□□□□□ -0.52
TRIM48-201ENST00000417545 NUTM2FA1L443 756 aa11.77□□□□□ -0.52
TRIM48-201ENST00000417545 CADPS2Q86UW7 1296 aa11.77□□□□□ -0.52
TRIM48-201ENST00000417545 TULP4Q9NRJ4 1543 aa11.77□□□□□ -0.53
TRIM48-201ENST00000417545 WASLO00401 505 aaPredicted RBP11.77□□□□□ -0.53
TRIM48-201ENST00000417545 CDK19Q9BWU1 502 aa11.77□□□□□ -0.53
TRIM48-201ENST00000417545 CERKQ8TCT0 537 aa11.76□□□□□ -0.53
TRIM48-201ENST00000417545 IQSEC2Q5JU85 1478 aa11.76□□□□□ -0.53
TRIM48-201ENST00000417545 ATAD2Q6PL18 1390 aa11.75□□□□□ -0.53
TRIM48-201ENST00000417545 TESK2Q96S53 571 aa11.75□□□□□ -0.53
TRIM48-201ENST00000417545 CABP2Q9NPB3 220 aa11.75□□□□□ -0.53
TRIM48-201ENST00000417545 RGPD8O14715 1765 aaPredicted RBP11.74□□□□□ -0.53
TRIM48-201ENST00000417545 DISP3Q9P2K9 1392 aa11.74□□□□□ -0.53
TRIM48-201ENST00000417545 TOM1O60784 492 aa11.74□□□□□ -0.53
TRIM48-201ENST00000417545 POTEHQ6S545 545 aa11.74□□□□□ -0.53
TRIM48-201ENST00000417545 TMC1Q8TDI8 760 aa11.74□□□□□ -0.53
TRIM48-201ENST00000417545 UBAP1LF5GYI3 381 aa11.73□□□□□ -0.53
TRIM48-201ENST00000417545 ANKARQ7Z5J8 1434 aa11.73□□□□□ -0.53
TRIM48-201ENST00000417545 ZNF316A6NFI3 1004 aaPredicted RBP11.72□□□□□ -0.53
TRIM48-201ENST00000417545 NUDT16Q96DE0 195 aaKnown RBP11.72□□□□□ -0.53
TRIM48-201ENST00000417545 KIF1AQ12756 1690 aa11.71□□□□□ -0.53
TRIM48-201ENST00000417545 ESCO1Q5FWF5 840 aa11.71□□□□□ -0.53
TRIM48-201ENST00000417545 ATP7BP35670 1465 aa11.71□□□□□ -0.53
TRIM48-201ENST00000417545 TOPAZ1Q8N9V7 1692 aa11.71□□□□□ -0.54
TRIM48-201ENST00000417545 MST1RQ04912 1400 aa11.7□□□□□ -0.54
TRIM48-201ENST00000417545 PPIP5K1Q6PFW1 1433 aa11.7□□□□□ -0.54
TRIM48-201ENST00000417545 PIP4K2BP78356 416 aa11.7□□□□□ -0.54
TRIM48-201ENST00000417545 USP32Q8NFA0 1604 aa11.7□□□□□ -0.54
TRIM48-201ENST00000417545 C1orf167Q5SNV9 1468 aa11.7□□□□□ -0.54
TRIM48-201ENST00000417545 HDGFL2Q7Z4V5 671 aaPredicted RBP11.69□□□□□ -0.54
TRIM48-201ENST00000417545 NGDNQ8NEJ9 315 aaKnown RBP11.69□□□□□ -0.54
TRIM48-201ENST00000417545 SLAIN2Q9P270 581 aa11.69□□□□□ -0.54
TRIM48-201ENST00000417545 CCDC61Q9Y6R9 512 aa11.69□□□□□ -0.54
TRIM48-201ENST00000417545 KIF7Q2M1P5 1343 aa11.69□□□□□ -0.54
TRIM48-201ENST00000417545 CCDC7Q96M83 1385 aa11.69□□□□□ -0.54
TRIM48-201ENST00000417545 NINLQ9Y2I6 1382 aa11.69□□□□□ -0.54
TRIM48-201ENST00000417545 PMFBP1Q8TBY8 1022 aa11.69□□□□□ -0.54
TRIM48-201ENST00000417545 PUS7Q96PZ0 661 aaKnown RBP11.69□□□□□ -0.54
TRIM48-201ENST00000417545 MYOM1P52179 1685 aa11.68□□□□□ -0.54
TRIM48-201ENST00000417545 ROBO1Q9Y6N7 1651 aa11.68□□□□□ -0.54
TRIM48-201ENST00000417545 TERF2IPQ9NYB0 399 aa11.68□□□□□ -0.54
TRIM48-201ENST00000417545 PHF8Q9UPP1 1060 aa11.68□□□□□ -0.54
TRIM48-201ENST00000417545 PRR36Q9H6K5 1346 aa11.67□□□□□ -0.54
TRIM48-201ENST00000417545 CABP1Q9NZU7 370 aa11.67□□□□□ -0.54
TRIM48-201ENST00000417545 ORAI2Q96SN7 254 aa11.66□□□□□ -0.54
TRIM48-201ENST00000417545 WASHC2AQ641Q2 1341 aa11.66□□□□□ -0.54
TRIM48-201ENST00000417545 AKAP12Q02952 1782 aa11.65□□□□□ -0.54
TRIM48-201ENST00000417545 C11orf95C9JLR9 678 aaPredicted RBP11.65□□□□□ -0.54
TRIM48-201ENST00000417545 PSME1Q06323 249 aa11.65□□□□□ -0.54
TRIM48-201ENST00000417545 SLC12A5Q9H2X9 1139 aa11.64□□□□□ -0.55
TRIM48-201ENST00000417545 ACEP12821 1306 aa11.64□□□□□ -0.55
TRIM48-201ENST00000417545 NPHP3Q7Z494 1330 aa11.64□□□□□ -0.55
TRIM48-201ENST00000417545 KTN1Q86UP2 1357 aaKnown RBP11.64□□□□□ -0.55
TRIM48-201ENST00000417545 PHLPP1O60346 1717 aa11.64□□□□□ -0.55
TRIM48-201ENST00000417545 ANKRD36BQ8N2N9 1353 aa11.63□□□□□ -0.55
TRIM48-201ENST00000417545 PAK3O75914 559 aaPredicted RBP11.63□□□□□ -0.55
TRIM48-201ENST00000417545 BRINP3Q76B58 766 aa11.63□□□□□ -0.55
TRIM48-201ENST00000417545 MON2Q7Z3U7 1717 aa11.63□□□□□ -0.55
TRIM48-201ENST00000417545 NHSL1Q5SYE7 1610 aa11.63□□□□□ -0.55
TRIM48-201ENST00000417545 PLEKHG3A1L390 1219 aa11.62□□□□□ -0.55
TRIM48-201ENST00000417545 FOXO3O43524 673 aa11.62□□□□□ -0.55
TRIM48-201ENST00000417545 LMOD2Q6P5Q4 547 aa11.62□□□□□ -0.55
TRIM48-201ENST00000417545 ZNF692Q9BU19 519 aaPredicted RBP11.62□□□□□ -0.55
TRIM48-201ENST00000417545 A0A1W2PP64 1363 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms