RNA–Protein interactions for RNA: ENST00000416204.1

LINC01238-201, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 590 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-201ENST00000416204 FOXO3O43524 673 aa14.3□□□□□ -0.12
LINC01238-201ENST00000416204 DEFB132Q7Z7B7 95 aa14.3□□□□□ -0.12
LINC01238-201ENST00000416204 MYOM2P54296 1465 aa14.3□□□□□ -0.12
LINC01238-201ENST00000416204 LAMC1P11047 1609 aa14.3□□□□□ -0.12
LINC01238-201ENST00000416204 FOXD1Q16676 465 aa14.29□□□□□ -0.12
LINC01238-201ENST00000416204 GJD4Q96KN9 370 aaPredicted RBP14.29□□□□□ -0.12
LINC01238-201ENST00000416204 COL22A1Q8NFW1 1626 aaPredicted RBP14.27□□□□□ -0.12
LINC01238-201ENST00000416204 NPHP3Q7Z494 1330 aa14.27□□□□□ -0.12
LINC01238-201ENST00000416204 STK26Q9P289 416 aa14.27□□□□□ -0.13
LINC01238-201ENST00000416204 PXDNQ92626 1479 aa14.26□□□□□ -0.13
LINC01238-201ENST00000416204 VGFO15240 615 aaPredicted RBP14.26□□□□□ -0.13
LINC01238-201ENST00000416204 RALGAPBQ86X10 1494 aa14.25□□□□□ -0.13
LINC01238-201ENST00000416204 WAPLQ7Z5K2 1190 aa14.25□□□□□ -0.13
LINC01238-201ENST00000416204 CCDC125Q86Z20 511 aa14.25□□□□□ -0.13
LINC01238-201ENST00000416204 GLI3P10071 1580 aa14.24□□□□□ -0.13
LINC01238-201ENST00000416204 KIF1BO60333 1816 aa14.24□□□□□ -0.13
LINC01238-201ENST00000416204 HFM1A2PYH4 1435 aa14.24□□□□□ -0.13
LINC01238-201ENST00000416204 PSDA5PKW4 1024 aaPredicted RBP14.23□□□□□ -0.13
LINC01238-201ENST00000416204 UNC5CLQ8IV45 518 aa14.23□□□□□ -0.13
LINC01238-201ENST00000416204 BLMP54132 1417 aaPredicted RBP14.23□□□□□ -0.13
LINC01238-201ENST00000416204 NAIPQ13075 1403 aa14.23□□□□□ -0.13
LINC01238-201ENST00000416204 SEPT12Q8IYM1 358 aa14.22□□□□□ -0.13
LINC01238-201ENST00000416204 CABLES1Q8TDN4 633 aa14.22□□□□□ -0.13
LINC01238-201ENST00000416204 CCDC9Q9Y3X0 531 aaKnown RBP14.22□□□□□ -0.13
LINC01238-201ENST00000416204 PLEKHH1Q9ULM0 1364 aa14.22□□□□□ -0.13
LINC01238-201ENST00000416204 CDC42BPGQ6DT37 1551 aa14.21□□□□□ -0.14
LINC01238-201ENST00000416204 MARF1Q9Y4F3 1742 aaKnown RBP14.21□□□□□ -0.14
LINC01238-201ENST00000416204 HAP1P54257 671 aaPredicted RBP14.2□□□□□ -0.14
LINC01238-201ENST00000416204 SF3B2Q13435 895 aaKnown RBP14.2□□□□□ -0.14
LINC01238-201ENST00000416204 TMEM132EQ6IEE7 984 aa14.2□□□□□ -0.14
LINC01238-201ENST00000416204 ADGRF5Q8IZF2 1346 aa14.19□□□□□ -0.14
LINC01238-201ENST00000416204 A0A0G2JS52 829 aa14.19□□□□□ -0.14
LINC01238-201ENST00000416204 MYT1Q01538 1121 aa14.19□□□□□ -0.14
LINC01238-201ENST00000416204 SLIT2O94813 1529 aa14.19□□□□□ -0.14
LINC01238-201ENST00000416204 SPATA31A3Q5VYP0 1347 aa14.18□□□□□ -0.14
LINC01238-201ENST00000416204 BRWD3Q6RI45 1802 aa14.18□□□□□ -0.14
LINC01238-201ENST00000416204 PRAG1Q86YV5 1406 aa14.18□□□□□ -0.14
LINC01238-201ENST00000416204 RGL3Q3MIN7 710 aa14.18□□□□□ -0.14
LINC01238-201ENST00000416204 LMOD2Q6P5Q4 547 aa14.18□□□□□ -0.14
LINC01238-201ENST00000416204 KRT28Q7Z3Y7 464 aa14.18□□□□□ -0.14
LINC01238-201ENST00000416204 SLC4A1APQ9BWU0 796 aaKnown RBP14.17□□□□□ -0.14
LINC01238-201ENST00000416204 LRPPRCP42704 1394 aaKnown RBP14.17□□□□□ -0.14
LINC01238-201ENST00000416204 PPLO60437 1756 aa14.17□□□□□ -0.14
LINC01238-201ENST00000416204 RPGRIP1LQ68CZ1 1315 aa14.16□□□□□ -0.14
LINC01238-201ENST00000416204 KRT27Q7Z3Y8 459 aa14.16□□□□□ -0.14
LINC01238-201ENST00000416204 USP32Q8NFA0 1604 aa14.15□□□□□ -0.14
LINC01238-201ENST00000416204 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.15□□□□□ -0.14
LINC01238-201ENST00000416204 FAM182BQ5T319 152 aa14.15□□□□□ -0.14
LINC01238-201ENST00000416204 SAFB2Q14151 953 aaKnown RBP eCLIP14.14□□□□□ -0.15
LINC01238-201ENST00000416204 VPS72Q15906 364 aa14.14□□□□□ -0.15
LINC01238-201ENST00000416204 HRCP23327 699 aa14.13□□□□□ -0.15
LINC01238-201ENST00000416204 FAM98CQ17RN3 349 aaKnown RBP14.13□□□□□ -0.15
LINC01238-201ENST00000416204 CCDC144AA2RUR9 1427 aa14.13□□□□□ -0.15
LINC01238-201ENST00000416204 RRBP1Q9P2E9 1410 aaKnown RBP14.13□□□□□ -0.15
LINC01238-201ENST00000416204 EN1Q05925 392 aaPredicted RBP14.12□□□□□ -0.15
LINC01238-201ENST00000416204 PHF8Q9UPP1 1060 aa14.12□□□□□ -0.15
LINC01238-201ENST00000416204 PLCH1Q4KWH8 1693 aa14.11□□□□□ -0.15
LINC01238-201ENST00000416204 FAM83GA6ND36 823 aa14.11□□□□□ -0.15
LINC01238-201ENST00000416204 TNS3Q68CZ2 1445 aa14.11□□□□□ -0.15
LINC01238-201ENST00000416204 LRP5O75197 1615 aa14.11□□□□□ -0.15
LINC01238-201ENST00000416204 FMN2Q9NZ56 1722 aa14.1□□□□□ -0.15
LINC01238-201ENST00000416204 TECPR2O15040 1411 aa14.1□□□□□ -0.15
LINC01238-201ENST00000416204 BAG6P46379 1132 aa14.1□□□□□ -0.15
LINC01238-201ENST00000416204 R3HDM1Q15032 1099 aaKnown RBP14.1□□□□□ -0.15
LINC01238-201ENST00000416204 PMFBP1Q8TBY8 1022 aa14.1□□□□□ -0.15
LINC01238-201ENST00000416204 ABCC11Q96J66 1382 aa14.09□□□□□ -0.15
LINC01238-201ENST00000416204 YTHDC2Q9H6S0 1430 aaKnown RBP14.08□□□□□ -0.15
LINC01238-201ENST00000416204 KIF1AQ12756 1690 aa14.08□□□□□ -0.16
LINC01238-201ENST00000416204 ONECUT3O60422 494 aaPredicted RBP14.08□□□□□ -0.16
LINC01238-201ENST00000416204 PSME1Q06323 249 aa14.08□□□□□ -0.16
LINC01238-201ENST00000416204 BTG4Q9NY30 223 aa14.08□□□□□ -0.16
LINC01238-201ENST00000416204 RGPD8O14715 1765 aaPredicted RBP14.07□□□□□ -0.16
LINC01238-201ENST00000416204 SPATA31E1Q6ZUB1 1445 aa14.06□□□□□ -0.16
LINC01238-201ENST00000416204 ABCA3Q99758 1704 aa14.05□□□□□ -0.16
LINC01238-201ENST00000416204 PRAM1Q96QH2 718 aa14.05□□□□□ -0.16
LINC01238-201ENST00000416204 PIK3C2GO75747 1445 aa14.05□□□□□ -0.16
LINC01238-201ENST00000416204 IFT172Q9UG01 1749 aa14.04□□□□□ -0.16
LINC01238-201ENST00000416204 EZH2Q15910 746 aaKnown RBP14.04□□□□□ -0.16
LINC01238-201ENST00000416204 CFAP70Q5T0N1 1121 aa14.04□□□□□ -0.16
LINC01238-201ENST00000416204 HIRIP3Q9BW71 556 aaPredicted RBP14.04□□□□□ -0.16
LINC01238-201ENST00000416204 SBNO1A3KN83 1393 aa14.04□□□□□ -0.16
LINC01238-201ENST00000416204 ANKRD30BQ9BXX2 1392 aa14.04□□□□□ -0.16
LINC01238-201ENST00000416204 KNDC1Q76NI1 1749 aa14.04□□□□□ -0.16
LINC01238-201ENST00000416204 NWD2Q9ULI1 1742 aa14.04□□□□□ -0.16
LINC01238-201ENST00000416204 ARHGEF10O15013 1369 aa14.03□□□□□ -0.16
LINC01238-201ENST00000416204 NRXN1Q9ULB1 1477 aa14.03□□□□□ -0.16
LINC01238-201ENST00000416204 NRAPQ86VF7 1730 aa14.01□□□□□ -0.17
LINC01238-201ENST00000416204 POGKQ9P215 609 aa14.01□□□□□ -0.17
LINC01238-201ENST00000416204 TRIM37O94972 964 aa14□□□□□ -0.17
LINC01238-201ENST00000416204 SPATA31A5Q5VU36 1347 aa13.99□□□□□ -0.17
LINC01238-201ENST00000416204 SPATA31A7Q8IWB4 1347 aa13.99□□□□□ -0.17
LINC01238-201ENST00000416204 PAK3O75914 559 aaPredicted RBP13.99□□□□□ -0.17
LINC01238-201ENST00000416204 MPHOSPH9Q99550 1183 aa13.99□□□□□ -0.17
LINC01238-201ENST00000416204 C14orf93Q9H972 538 aaKnown RBP13.99□□□□□ -0.17
LINC01238-201ENST00000416204 DHX57Q6P158 1386 aaKnown RBP13.98□□□□□ -0.17
LINC01238-201ENST00000416204 MINK1Q8N4C8 1332 aaPredicted RBP13.98□□□□□ -0.17
LINC01238-201ENST00000416204 CHRNA2Q15822 529 aa13.98□□□□□ -0.17
LINC01238-201ENST00000416204 STRN4Q9NRL3 753 aa13.98□□□□□ -0.17
LINC01238-201ENST00000416204 RGPD1P0DJD0 1748 aa13.98□□□□□ -0.17
LINC01238-201ENST00000416204 PRR36Q9H6K5 1346 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms