RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 VAC14Q08AM6 782 aa4□□□□□ -1.77
MCF2-204ENST00000414978 PIP4P2Q8N4L2 257 aa4□□□□□ -1.77
MCF2-204ENST00000414978 ADAMTS19Q8TE59 1207 aa4□□□□□ -1.77
MCF2-204ENST00000414978 BOLA1Q9Y3E2 137 aa4□□□□□ -1.77
MCF2-204ENST00000414978 MADDQ8WXG6 1647 aa4□□□□□ -1.77
MCF2-204ENST00000414978 NDUFV2P19404 249 aa3.99□□□□□ -1.77
MCF2-204ENST00000414978 IVNS1ABPQ9Y6Y0 642 aa3.99□□□□□ -1.77
MCF2-204ENST00000414978 CFAP74Q9C0B2 1584 aa3.99□□□□□ -1.77
MCF2-204ENST00000414978 PTPRMP28827 1452 aa3.99□□□□□ -1.77
MCF2-204ENST00000414978 PADI6Q6TGC4 694 aa3.99□□□□□ -1.77
MCF2-204ENST00000414978 METTL3Q86U44 580 aaKnown RBP3.99□□□□□ -1.77
MCF2-204ENST00000414978 CABLES1Q8TDN4 633 aa3.99□□□□□ -1.77
MCF2-204ENST00000414978 FRMPD1Q5SYB0 1578 aa3.99□□□□□ -1.77
MCF2-204ENST00000414978 PHLDB1Q86UU1 1377 aa3.99□□□□□ -1.77
MCF2-204ENST00000414978 CHRDL2Q6WN34 429 aa3.99□□□□□ -1.77
MCF2-204ENST00000414978 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.99□□□□□ -1.77
MCF2-204ENST00000414978 PPP1R1BQ9UD71 204 aaPredicted RBP3.99□□□□□ -1.77
MCF2-204ENST00000414978 PCDHB15Q9Y5E8 787 aa3.99□□□□□ -1.77
MCF2-204ENST00000414978 ZMYM4Q5VZL5 1548 aa3.99□□□□□ -1.77
MCF2-204ENST00000414978 COL17A1Q9UMD9 1497 aaPredicted RBP3.98□□□□□ -1.77
MCF2-204ENST00000414978 RIMS1Q86UR5 1692 aaKnown RBP3.98□□□□□ -1.77
MCF2-204ENST00000414978 E9PSI1 815 aa3.98□□□□□ -1.77
MCF2-204ENST00000414978 LMOD1P29536 600 aaPredicted RBP3.98□□□□□ -1.77
MCF2-204ENST00000414978 HLA-CQ95604 372 aa3.98□□□□□ -1.77
MCF2-204ENST00000414978 NPDC1Q9NQX5 325 aaPredicted RBP3.98□□□□□ -1.77
MCF2-204ENST00000414978 ABCA9Q8IUA7 1624 aa3.98□□□□□ -1.77
MCF2-204ENST00000414978 FER1L4A9Z1Z3 1794 aa3.98□□□□□ -1.77
MCF2-204ENST00000414978 SMAPO00193 183 aa3.98□□□□□ -1.77
MCF2-204ENST00000414978 SCNN1AP37088 669 aa3.98□□□□□ -1.77
MCF2-204ENST00000414978 SIRT1Q96EB6 747 aa3.98□□□□□ -1.77
MCF2-204ENST00000414978 FAM217BQ9NTX9 383 aaPredicted RBP3.98□□□□□ -1.77
MCF2-204ENST00000414978 ZC3H4Q9UPT8 1303 aaKnown RBP3.98□□□□□ -1.77
MCF2-204ENST00000414978 RBM47A0AV96 593 aaKnown RBP3.98□□□□□ -1.77
MCF2-204ENST00000414978 GUCA2AQ02747 115 aa3.98□□□□□ -1.77
MCF2-204ENST00000414978 PDCD7Q8N8D1 485 aaKnown RBP3.98□□□□□ -1.77
MCF2-204ENST00000414978 RICTORQ6R327 1708 aa3.98□□□□□ -1.77
MCF2-204ENST00000414978 LGR5O75473 907 aa3.97□□□□□ -1.77
MCF2-204ENST00000414978 MOXD2PA6NHM9 499 aa3.97□□□□□ -1.77
MCF2-204ENST00000414978 CCDC27Q2M243 656 aa3.97□□□□□ -1.77
MCF2-204ENST00000414978 SPDYE5A6NIY4 337 aa3.97□□□□□ -1.77
MCF2-204ENST00000414978 LDLRAD1Q5T700 205 aa3.97□□□□□ -1.77
MCF2-204ENST00000414978 ASXL2Q76L83 1435 aa3.96□□□□□ -1.77
MCF2-204ENST00000414978 LTBP4Q8N2S1 1624 aa3.96□□□□□ -1.78
MCF2-204ENST00000414978 CSB-PGBD3P0DP91 1061 aa3.96□□□□□ -1.78
MCF2-204ENST00000414978 ATN1P54259 1190 aaPredicted RBP3.96□□□□□ -1.78
MCF2-204ENST00000414978 FAM69CQ0P6D2 419 aa3.96□□□□□ -1.78
MCF2-204ENST00000414978 HMX1Q9NP08 348 aaPredicted RBP3.96□□□□□ -1.78
MCF2-204ENST00000414978 UGGT2Q9NYU1 1516 aa3.96□□□□□ -1.78
MCF2-204ENST00000414978 SEC24BO95487 1268 aa3.96□□□□□ -1.78
MCF2-204ENST00000414978 PHLDB3Q6NSJ2 640 aa3.96□□□□□ -1.78
MCF2-204ENST00000414978 NUTM1Q86Y26 1132 aa3.96□□□□□ -1.78
MCF2-204ENST00000414978 DHX37Q8IY37 1157 aaKnown RBP3.96□□□□□ -1.78
MCF2-204ENST00000414978 PCDHGA10Q9Y5H3 936 aa3.96□□□□□ -1.78
MCF2-204ENST00000414978 RTL5Q5HYW3 569 aaPredicted RBP3.95□□□□□ -1.78
MCF2-204ENST00000414978 CFAP70Q5T0N1 1121 aa3.95□□□□□ -1.78
MCF2-204ENST00000414978 RDH13Q8NBN7 331 aa3.95□□□□□ -1.78
MCF2-204ENST00000414978 EPS8L1Q8TE68 723 aa3.95□□□□□ -1.78
MCF2-204ENST00000414978 REREQ9P2R6 1566 aa3.95□□□□□ -1.78
MCF2-204ENST00000414978 ZNF142P52746 1687 aaPredicted RBP3.95□□□□□ -1.78
MCF2-204ENST00000414978 PTPRTO14522 1441 aa3.95□□□□□ -1.78
MCF2-204ENST00000414978 RNF40O75150 1001 aa3.95□□□□□ -1.78
MCF2-204ENST00000414978 HSP90B1P14625 803 aaKnown RBP3.95□□□□□ -1.78
MCF2-204ENST00000414978 RIC3Q7Z5B4 369 aa3.95□□□□□ -1.78
MCF2-204ENST00000414978 SLAIN2Q9P270 581 aa3.95□□□□□ -1.78
MCF2-204ENST00000414978 DEPDC4Q8N2C3 294 aa3.95□□□□□ -1.78
MCF2-204ENST00000414978 MROH2AA6NES4 1674 aa3.95□□□□□ -1.78
MCF2-204ENST00000414978 USP17L8P0C7I0 530 aa3.94□□□□□ -1.78
MCF2-204ENST00000414978 PLCG2P16885 1265 aa3.94□□□□□ -1.78
MCF2-204ENST00000414978 FXR2P51116 673 aaKnown RBP eCLIP3.94□□□□□ -1.78
MCF2-204ENST00000414978 EN1Q05925 392 aaPredicted RBP3.94□□□□□ -1.78
MCF2-204ENST00000414978 CTTNBP2Q8WZ74 1663 aa3.94□□□□□ -1.78
MCF2-204ENST00000414978 WDR7Q9Y4E6 1490 aa3.94□□□□□ -1.78
MCF2-204ENST00000414978 WWC1Q8IX03 1113 aa3.94□□□□□ -1.78
MCF2-204ENST00000414978 ZNF454Q8N9F8 522 aa3.94□□□□□ -1.78
MCF2-204ENST00000414978 LRRN4Q8WUT4 740 aa3.94□□□□□ -1.78
MCF2-204ENST00000414978 KHSRPQ92945 711 aaKnown RBP eCLIP3.94□□□□□ -1.78
MCF2-204ENST00000414978 ABCA8O94911 1581 aa3.94□□□□□ -1.78
MCF2-204ENST00000414978 IQGAP2Q13576 1575 aa3.94□□□□□ -1.78
MCF2-204ENST00000414978 WRNQ14191 1432 aaPredicted RBP eCLIP3.94□□□□□ -1.78
MCF2-204ENST00000414978 SLAIN1Q8ND83 568 aa3.94□□□□□ -1.78
MCF2-204ENST00000414978 KIAA0556O60303 1618 aa3.94□□□□□ -1.78
MCF2-204ENST00000414978 NEO1Q92859 1461 aa3.94□□□□□ -1.78
MCF2-204ENST00000414978 MED1Q15648 1581 aaPredicted RBP3.93□□□□□ -1.78
MCF2-204ENST00000414978 CTDSPL2Q05D32 466 aa3.93□□□□□ -1.78
MCF2-204ENST00000414978 ILDR2Q71H61 639 aa3.93□□□□□ -1.78
MCF2-204ENST00000414978 SYMPKQ92797 1274 aaKnown RBP3.93□□□□□ -1.78
MCF2-204ENST00000414978 TFIP11Q9UBB9 837 aaKnown RBP3.93□□□□□ -1.78
MCF2-204ENST00000414978 SPIRE2Q8WWL2 714 aa3.93□□□□□ -1.78
MCF2-204ENST00000414978 ARHGEF12Q9NZN5 1544 aa3.93□□□□□ -1.78
MCF2-204ENST00000414978 PALM3A6NDB9 673 aaPredicted RBP3.92□□□□□ -1.78
MCF2-204ENST00000414978 PXYLP1Q8TE99 480 aa3.92□□□□□ -1.78
MCF2-204ENST00000414978 PBXIP1Q96AQ6 731 aa3.92□□□□□ -1.78
MCF2-204ENST00000414978 COLQQ9Y215 455 aaPredicted RBP3.92□□□□□ -1.78
MCF2-204ENST00000414978 OCEL1Q9H607 264 aa3.92□□□□□ -1.78
MCF2-204ENST00000414978 GNEQ9Y223 722 aaKnown RBP3.92□□□□□ -1.78
MCF2-204ENST00000414978 SIGLEC1Q9BZZ2 1709 aa3.92□□□□□ -1.78
MCF2-204ENST00000414978 TNIKQ9UKE5 1360 aa3.92□□□□□ -1.78
MCF2-204ENST00000414978 KIF3CO14782 793 aa3.92□□□□□ -1.78
MCF2-204ENST00000414978 C3orf67Q6ZVT6 689 aa3.92□□□□□ -1.78
MCF2-204ENST00000414978 ZNF710Q8N1W2 664 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms