RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.93■□□□□ 0.14
CCDC88A-204ENST00000413716 MAP2K1Q02750 393 aaPredicted RBP15.92■□□□□ 0.14
CCDC88A-204ENST00000413716 FOSBP53539 338 aa15.92■□□□□ 0.14
CCDC88A-204ENST00000413716 PDE3BQ13370 1112 aa15.92■□□□□ 0.14
CCDC88A-204ENST00000413716 ERICH4A6NGS2 130 aa15.92■□□□□ 0.14
CCDC88A-204ENST00000413716 IFIT2P09913 472 aaKnown RBP15.91■□□□□ 0.14
CCDC88A-204ENST00000413716 SHTN1A0MZ66 631 aa15.91■□□□□ 0.14
CCDC88A-204ENST00000413716 PDE4AP27815 886 aa15.91■□□□□ 0.14
CCDC88A-204ENST00000413716 CFAP45Q9UL16 551 aa15.91■□□□□ 0.14
CCDC88A-204ENST00000413716 TERF2IPQ9NYB0 399 aa15.91■□□□□ 0.14
CCDC88A-204ENST00000413716 C9orf78Q9NZ63 289 aaPredicted RBP15.91■□□□□ 0.14
CCDC88A-204ENST00000413716 STK26Q9P289 416 aa15.91■□□□□ 0.14
CCDC88A-204ENST00000413716 NINLQ9Y2I6 1382 aa15.9■□□□□ 0.14
CCDC88A-204ENST00000413716 RALYLQ86SE5 291 aaKnown RBP15.9■□□□□ 0.14
CCDC88A-204ENST00000413716 TSPY26PQ9H489 355 aa15.9■□□□□ 0.14
CCDC88A-204ENST00000413716 GRIPAP1Q4V328 841 aa15.9■□□□□ 0.14
CCDC88A-204ENST00000413716 BRPF1P55201 1214 aaPredicted RBP15.89■□□□□ 0.13
CCDC88A-204ENST00000413716 SLC4A3P48751 1232 aa15.89■□□□□ 0.13
CCDC88A-204ENST00000413716 STIM1Q13586 685 aa15.89■□□□□ 0.13
CCDC88A-204ENST00000413716 INTS3Q68E01 1043 aaKnown RBP15.89■□□□□ 0.13
CCDC88A-204ENST00000413716 CCNB3Q8WWL7 1395 aa15.89■□□□□ 0.13
CCDC88A-204ENST00000413716 PPFIBP1Q86W92 1011 aa15.88■□□□□ 0.13
CCDC88A-204ENST00000413716 RRP9O43818 475 aaKnown RBP15.88■□□□□ 0.13
CCDC88A-204ENST00000413716 CCDC102AQ96A19 550 aa15.88■□□□□ 0.13
CCDC88A-204ENST00000413716 NEBLO76041 1014 aa15.88■□□□□ 0.13
CCDC88A-204ENST00000413716 FAM107BQ9H098 131 aa15.88■□□□□ 0.13
CCDC88A-204ENST00000413716 ANKRD18BA2A2Z9 1011 aa15.87■□□□□ 0.13
CCDC88A-204ENST00000413716 RBM10P98175 930 aaKnown RBP15.87■□□□□ 0.13
CCDC88A-204ENST00000413716 SIN3AQ96ST3 1273 aa15.87■□□□□ 0.13
CCDC88A-204ENST00000413716 TMCO3Q6UWJ1 677 aa15.87■□□□□ 0.13
CCDC88A-204ENST00000413716 TRIM21P19474 475 aaKnown RBP15.87■□□□□ 0.13
CCDC88A-204ENST00000413716 KRT18P05783 430 aaKnown RBP15.86■□□□□ 0.13
CCDC88A-204ENST00000413716 LRRFIP2Q9Y608 721 aaKnown RBP15.86■□□□□ 0.13
CCDC88A-204ENST00000413716 ZWINTO95229 277 aa15.86■□□□□ 0.13
CCDC88A-204ENST00000413716 JAKMIP3Q5VZ66 844 aa15.85■□□□□ 0.13
CCDC88A-204ENST00000413716 AMPHP49418 695 aa15.85■□□□□ 0.13
CCDC88A-204ENST00000413716 PDCL3Q9H2J4 239 aa15.85■□□□□ 0.13
CCDC88A-204ENST00000413716 PSMA5P28066 241 aa15.85■□□□□ 0.13
CCDC88A-204ENST00000413716 GPATCH11Q8N954 259 aa15.85■□□□□ 0.13
CCDC88A-204ENST00000413716 ERC2O15083 957 aa15.85■□□□□ 0.13
CCDC88A-204ENST00000413716 C1orf141Q5JVX7 400 aa15.84■□□□□ 0.13
CCDC88A-204ENST00000413716 MBD3O95983 291 aa15.84■□□□□ 0.13
CCDC88A-204ENST00000413716 UQCRHLA0A096LP55 91 aa15.84■□□□□ 0.13
CCDC88A-204ENST00000413716 UQCRHP07919 91 aa15.84■□□□□ 0.13
CCDC88A-204ENST00000413716 SART3Q15020 963 aaKnown RBP15.84■□□□□ 0.13
CCDC88A-204ENST00000413716 SAMD1Q6SPF0 538 aaPredicted RBP15.84■□□□□ 0.13
CCDC88A-204ENST00000413716 MICALCLQ6ZW33 695 aa15.84■□□□□ 0.13
CCDC88A-204ENST00000413716 AEBP1Q8IUX7 1158 aa15.84■□□□□ 0.13
CCDC88A-204ENST00000413716 DACH1Q9UI36 760 aa15.84■□□□□ 0.13
CCDC88A-204ENST00000413716 SERPINC1P01008 464 aa15.84■□□□□ 0.13
CCDC88A-204ENST00000413716 MAP9Q49MG5 647 aa15.84■□□□□ 0.13
CCDC88A-204ENST00000413716 SEPT6Q14141 434 aa15.83■□□□□ 0.13
CCDC88A-204ENST00000413716 FANCIQ9NVI1 1328 aa15.83■□□□□ 0.13
CCDC88A-204ENST00000413716 ANAPC15P60006 121 aa15.83■□□□□ 0.12
CCDC88A-204ENST00000413716 SPC24Q8NBT2 197 aa15.83■□□□□ 0.12
CCDC88A-204ENST00000413716 ZKSCAN2Q63HK3 967 aa15.83■□□□□ 0.12
CCDC88A-204ENST00000413716 FHAD1B1AJZ9 1412 aa15.83■□□□□ 0.12
CCDC88A-204ENST00000413716 PDCP20941 246 aa15.82■□□□□ 0.12
CCDC88A-204ENST00000413716 ZNF396Q96N95 335 aaPredicted RBP15.82■□□□□ 0.12
CCDC88A-204ENST00000413716 ARHGAP35Q9NRY4 1499 aa15.82■□□□□ 0.12
CCDC88A-204ENST00000413716 HSPA5P11021 654 aaKnown RBP15.82■□□□□ 0.12
CCDC88A-204ENST00000413716 MCM3P25205 808 aa15.82■□□□□ 0.12
CCDC88A-204ENST00000413716 IKQ13123 557 aaPredicted RBP15.82■□□□□ 0.12
CCDC88A-204ENST00000413716 DAAM2Q86T65 1068 aa15.82■□□□□ 0.12
CCDC88A-204ENST00000413716 LUZP1Q86V48 1076 aa15.81■□□□□ 0.12
CCDC88A-204ENST00000413716 CRACR2AQ9BSW2 395 aa15.81■□□□□ 0.12
CCDC88A-204ENST00000413716 RNF214Q8ND24 703 aa15.81■□□□□ 0.12
CCDC88A-204ENST00000413716 CBFA2T2O43439 604 aa15.81■□□□□ 0.12
CCDC88A-204ENST00000413716 KIF15Q9NS87 1388 aa15.81■□□□□ 0.12
CCDC88A-204ENST00000413716 RBM25P49756 843 aaKnown RBP15.8■□□□□ 0.12
CCDC88A-204ENST00000413716 TTC5Q8N0Z6 440 aa15.8■□□□□ 0.12
CCDC88A-204ENST00000413716 DDX19BQ9UMR2 479 aa15.8■□□□□ 0.12
CCDC88A-204ENST00000413716 G3BP1Q13283 466 aaKnown RBP eCLIP15.8■□□□□ 0.12
CCDC88A-204ENST00000413716 CCDC192P0DO97 292 aa15.8■□□□□ 0.12
CCDC88A-204ENST00000413716 JMYQ8N9B5 988 aa15.8■□□□□ 0.12
CCDC88A-204ENST00000413716 CLGNO14967 610 aa15.79■□□□□ 0.12
CCDC88A-204ENST00000413716 RB1CC1Q8TDY2 1594 aa15.79■□□□□ 0.12
CCDC88A-204ENST00000413716 BMS1Q14692 1282 aaKnown RBP15.79■□□□□ 0.12
CCDC88A-204ENST00000413716 FMNL2Q96PY5 1086 aa15.79■□□□□ 0.12
CCDC88A-204ENST00000413716 CCDC148Q8NFR7 591 aa15.79■□□□□ 0.12
CCDC88A-204ENST00000413716 CALCOCO1Q9P1Z2 691 aa15.79■□□□□ 0.12
CCDC88A-204ENST00000413716 GCOM1H8Y6P7 765 aaPredicted RBP15.79■□□□□ 0.12
CCDC88A-204ENST00000413716 MYZAPP0CAP1 466 aa15.79■□□□□ 0.12
CCDC88A-204ENST00000413716 SLC3A2P08195 630 aaKnown RBP15.78■□□□□ 0.12
CCDC88A-204ENST00000413716 EIF4G1Q04637 1599 aaKnown RBP15.78■□□□□ 0.12
CCDC88A-204ENST00000413716 PDCL2Q8N4E4 241 aa15.78■□□□□ 0.12
CCDC88A-204ENST00000413716 SMC1AQ14683 1233 aaKnown RBP15.78■□□□□ 0.12
CCDC88A-204ENST00000413716 NLRP13Q86W25 1043 aa15.78■□□□□ 0.12
CCDC88A-204ENST00000413716 CEP164Q9UPV0 1460 aa15.78■□□□□ 0.12
CCDC88A-204ENST00000413716 IPO4Q8TEX9 1081 aaKnown RBP15.77■□□□□ 0.12
CCDC88A-204ENST00000413716 DNAI2Q9GZS0 605 aa15.77■□□□□ 0.12
CCDC88A-204ENST00000413716 GBP3Q9H0R5 595 aa15.77■□□□□ 0.12
CCDC88A-204ENST00000413716 MSH5O43196 834 aa15.77■□□□□ 0.12
CCDC88A-204ENST00000413716 KIAA1328Q86T90 577 aa15.77■□□□□ 0.11
CCDC88A-204ENST00000413716 TANGO6Q9C0B7 1094 aa15.77■□□□□ 0.11
CCDC88A-204ENST00000413716 GIGYF2Q6Y7W6 1299 aaKnown RBP15.76■□□□□ 0.11
CCDC88A-204ENST00000413716 FAM177A1Q8N128 213 aaPredicted RBP15.76■□□□□ 0.11
CCDC88A-204ENST00000413716 E9PSI1 815 aa15.76■□□□□ 0.11
CCDC88A-204ENST00000413716 PUS7Q96PZ0 661 aaKnown RBP15.76■□□□□ 0.11
CCDC88A-204ENST00000413716 DDX58O95786 925 aaKnown RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms