RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 NHSL1Q5SYE7 1610 aa18.17■□□□□ 0.5
SMARCB1-203ENST00000407082 SPHKAPQ2M3C7 1700 aa18.15■□□□□ 0.5
SMARCB1-203ENST00000407082 SETBP1Q9Y6X0 1596 aa18.15■□□□□ 0.5
SMARCB1-203ENST00000407082 METP08581 1390 aa18.15■□□□□ 0.5
SMARCB1-203ENST00000407082 ORAI2Q96SN7 254 aa18.14■□□□□ 0.49
SMARCB1-203ENST00000407082 CCDC125Q86Z20 511 aa18.13■□□□□ 0.49
SMARCB1-203ENST00000407082 ANKRD30BQ9BXX2 1392 aa18.12■□□□□ 0.49
SMARCB1-203ENST00000407082 FNBP4Q8N3X1 1017 aaPredicted RBP18.11■□□□□ 0.49
SMARCB1-203ENST00000407082 ADGRL3Q9HAR2 1447 aa18.11■□□□□ 0.49
SMARCB1-203ENST00000407082 XRN1Q8IZH2 1706 aaKnown RBP18.1■□□□□ 0.49
SMARCB1-203ENST00000407082 C1orf167Q5SNV9 1468 aa18.1■□□□□ 0.49
SMARCB1-203ENST00000407082 CCDC144AA2RUR9 1427 aa18.1■□□□□ 0.49
SMARCB1-203ENST00000407082 SOS2Q07890 1332 aaPredicted RBP18.08■□□□□ 0.49
SMARCB1-203ENST00000407082 CLTCL1P53675 1640 aa18.08■□□□□ 0.48
SMARCB1-203ENST00000407082 ATRNO75882 1429 aa18.07■□□□□ 0.48
SMARCB1-203ENST00000407082 PTCH1Q13635 1447 aa18.06■□□□□ 0.48
SMARCB1-203ENST00000407082 NRXN3Q9Y4C0 1643 aa18.06■□□□□ 0.48
SMARCB1-203ENST00000407082 GJD4Q96KN9 370 aaPredicted RBP18.05■□□□□ 0.48
SMARCB1-203ENST00000407082 NALCNQ8IZF0 1738 aa18.04■□□□□ 0.48
SMARCB1-203ENST00000407082 XPCQ01831 940 aaPredicted RBP18.04■□□□□ 0.48
SMARCB1-203ENST00000407082 SF3B2Q13435 895 aaKnown RBP18.04■□□□□ 0.48
SMARCB1-203ENST00000407082 ESCO1Q5FWF5 840 aa18.04■□□□□ 0.48
SMARCB1-203ENST00000407082 DEFB132Q7Z7B7 95 aa18.04■□□□□ 0.48
SMARCB1-203ENST00000407082 YTHDC1Q96MU7 727 aaKnown RBP18.03■□□□□ 0.48
SMARCB1-203ENST00000407082 RGL3Q3MIN7 710 aa18.02■□□□□ 0.48
SMARCB1-203ENST00000407082 KIF1BO60333 1816 aa18.02■□□□□ 0.47
SMARCB1-203ENST00000407082 BCL9LQ86UU0 1499 aa18.01■□□□□ 0.47
SMARCB1-203ENST00000407082 FOXO3O43524 673 aa17.99■□□□□ 0.47
SMARCB1-203ENST00000407082 GTF3C3Q9Y5Q9 886 aa17.99■□□□□ 0.47
SMARCB1-203ENST00000407082 NPHP3Q7Z494 1330 aa17.98■□□□□ 0.47
SMARCB1-203ENST00000407082 PLEKHG5O94827 1062 aa17.98■□□□□ 0.47
SMARCB1-203ENST00000407082 ROBO2Q9HCK4 1378 aa17.98■□□□□ 0.47
SMARCB1-203ENST00000407082 BLMP54132 1417 aaPredicted RBP17.98■□□□□ 0.47
SMARCB1-203ENST00000407082 SPATA31E1Q6ZUB1 1445 aa17.98■□□□□ 0.47
SMARCB1-203ENST00000407082 NUTM2FA1L443 756 aa17.97■□□□□ 0.47
SMARCB1-203ENST00000407082 RPGRIP1LQ68CZ1 1315 aa17.97■□□□□ 0.47
SMARCB1-203ENST00000407082 PSDA5PKW4 1024 aaPredicted RBP17.96■□□□□ 0.47
SMARCB1-203ENST00000407082 UNC5CLQ8IV45 518 aa17.96■□□□□ 0.47
SMARCB1-203ENST00000407082 CCDC9Q9Y3X0 531 aaKnown RBP17.96■□□□□ 0.47
SMARCB1-203ENST00000407082 VGFO15240 615 aaPredicted RBP17.95■□□□□ 0.46
SMARCB1-203ENST00000407082 EP400Q96L91 3159 aa17.95■□□□□ 0.46
SMARCB1-203ENST00000407082 MYOM2P54296 1465 aa17.95■□□□□ 0.46
SMARCB1-203ENST00000407082 LAMC1P11047 1609 aa17.94■□□□□ 0.46
SMARCB1-203ENST00000407082 CCER2I3L3R5 266 aa17.94■□□□□ 0.46
SMARCB1-203ENST00000407082 ANP32CO43423 234 aa17.94■□□□□ 0.46
SMARCB1-203ENST00000407082 HAP1P54257 671 aaPredicted RBP17.94■□□□□ 0.46
SMARCB1-203ENST00000407082 SEPT12Q8IYM1 358 aa17.94■□□□□ 0.46
SMARCB1-203ENST00000407082 DDX10Q13206 875 aaKnown RBP17.93■□□□□ 0.46
SMARCB1-203ENST00000407082 COL22A1Q8NFW1 1626 aaPredicted RBP17.92■□□□□ 0.46
SMARCB1-203ENST00000407082 A0A0G2JS52 829 aa17.92■□□□□ 0.46
SMARCB1-203ENST00000407082 MYT1Q01538 1121 aa17.92■□□□□ 0.46
SMARCB1-203ENST00000407082 RALGAPBQ86X10 1494 aa17.92■□□□□ 0.46
SMARCB1-203ENST00000407082 NEXMIFQ5QGS0 1516 aa17.92■□□□□ 0.46
SMARCB1-203ENST00000407082 EIF4G2P78344 907 aaKnown RBP eCLIP17.91■□□□□ 0.46
SMARCB1-203ENST00000407082 DCAF11Q8TEB1 546 aa17.91■□□□□ 0.46
SMARCB1-203ENST00000407082 PELP1Q8IZL8 1130 aaKnown RBP17.9■□□□□ 0.46
SMARCB1-203ENST00000407082 KDM2AQ9Y2K7 1162 aa17.9■□□□□ 0.46
SMARCB1-203ENST00000407082 LRPPRCP42704 1394 aaKnown RBP17.9■□□□□ 0.46
SMARCB1-203ENST00000407082 STK26Q9P289 416 aa17.89■□□□□ 0.45
SMARCB1-203ENST00000407082 L3MBTL2Q969R5 705 aa17.88■□□□□ 0.45
SMARCB1-203ENST00000407082 MARF1Q9Y4F3 1742 aaKnown RBP17.88■□□□□ 0.45
SMARCB1-203ENST00000407082 PXDNQ92626 1479 aa17.88■□□□□ 0.45
SMARCB1-203ENST00000407082 KRT27Q7Z3Y8 459 aa17.87■□□□□ 0.45
SMARCB1-203ENST00000407082 GLI3P10071 1580 aa17.87■□□□□ 0.45
SMARCB1-203ENST00000407082 PPLO60437 1756 aa17.86■□□□□ 0.45
SMARCB1-203ENST00000407082 BAG6P46379 1132 aa17.86■□□□□ 0.45
SMARCB1-203ENST00000407082 LMOD2Q6P5Q4 547 aa17.86■□□□□ 0.45
SMARCB1-203ENST00000407082 WAPLQ7Z5K2 1190 aa17.86■□□□□ 0.45
SMARCB1-203ENST00000407082 STAC3Q96MF2 364 aa17.86■□□□□ 0.45
SMARCB1-203ENST00000407082 ADGRF5Q8IZF2 1346 aa17.86■□□□□ 0.45
SMARCB1-203ENST00000407082 BRWD3Q6RI45 1802 aa17.85■□□□□ 0.45
SMARCB1-203ENST00000407082 KRT28Q7Z3Y7 464 aa17.85■□□□□ 0.45
SMARCB1-203ENST00000407082 CABLES1Q8TDN4 633 aa17.85■□□□□ 0.45
SMARCB1-203ENST00000407082 SPATA31A3Q5VYP0 1347 aa17.84■□□□□ 0.45
SMARCB1-203ENST00000407082 VPS72Q15906 364 aa17.84■□□□□ 0.45
SMARCB1-203ENST00000407082 SLIT2O94813 1529 aa17.83■□□□□ 0.45
SMARCB1-203ENST00000407082 IFT172Q9UG01 1749 aa17.83■□□□□ 0.44
SMARCB1-203ENST00000407082 LRP5O75197 1615 aa17.82■□□□□ 0.44
SMARCB1-203ENST00000407082 HSPA5P11021 654 aaKnown RBP17.81■□□□□ 0.44
SMARCB1-203ENST00000407082 EN1Q05925 392 aaPredicted RBP17.81■□□□□ 0.44
SMARCB1-203ENST00000407082 R3HDM1Q15032 1099 aaKnown RBP17.81■□□□□ 0.44
SMARCB1-203ENST00000407082 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.81■□□□□ 0.44
SMARCB1-203ENST00000407082 CDC42BPGQ6DT37 1551 aa17.79■□□□□ 0.44
SMARCB1-203ENST00000407082 ONECUT3O60422 494 aaPredicted RBP17.78■□□□□ 0.44
SMARCB1-203ENST00000407082 PSME1Q06323 249 aa17.78■□□□□ 0.44
SMARCB1-203ENST00000407082 FAM98CQ17RN3 349 aaKnown RBP17.78■□□□□ 0.44
SMARCB1-203ENST00000407082 FAM182BQ5T319 152 aa17.78■□□□□ 0.44
SMARCB1-203ENST00000407082 NRXN1Q9ULB1 1477 aa17.77■□□□□ 0.44
SMARCB1-203ENST00000407082 TMEM132EQ6IEE7 984 aa17.77■□□□□ 0.44
SMARCB1-203ENST00000407082 PIK3C2GO75747 1445 aa17.77■□□□□ 0.44
SMARCB1-203ENST00000407082 CFAP70Q5T0N1 1121 aa17.76■□□□□ 0.43
SMARCB1-203ENST00000407082 C14orf93Q9H972 538 aaKnown RBP17.76■□□□□ 0.43
SMARCB1-203ENST00000407082 USP32Q8NFA0 1604 aa17.76■□□□□ 0.43
SMARCB1-203ENST00000407082 PRAG1Q86YV5 1406 aa17.75■□□□□ 0.43
SMARCB1-203ENST00000407082 FAM83GA6ND36 823 aa17.75■□□□□ 0.43
SMARCB1-203ENST00000407082 HIRIP3Q9BW71 556 aaPredicted RBP17.75■□□□□ 0.43
SMARCB1-203ENST00000407082 PHF8Q9UPP1 1060 aa17.75■□□□□ 0.43
SMARCB1-203ENST00000407082 PLEKHH1Q9ULM0 1364 aa17.74■□□□□ 0.43
SMARCB1-203ENST00000407082 YY1P25490 414 aa17.73■□□□□ 0.43
SMARCB1-203ENST00000407082 BTG4Q9NY30 223 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms