RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 PTCH1Q13635 1447 aa19.8■□□□□ 0.76
VCX3A-202ENST00000398729 C1orf167Q5SNV9 1468 aa19.79■□□□□ 0.76
VCX3A-202ENST00000398729 ADGRF5Q8IZF2 1346 aa19.79■□□□□ 0.76
VCX3A-202ENST00000398729 SOS2Q07890 1332 aaPredicted RBP19.78■□□□□ 0.76
VCX3A-202ENST00000398729 PRAG1Q86YV5 1406 aa19.77■□□□□ 0.76
VCX3A-202ENST00000398729 NALCNQ8IZF0 1738 aa19.77■□□□□ 0.76
VCX3A-202ENST00000398729 ROBO2Q9HCK4 1378 aa19.76■□□□□ 0.75
VCX3A-202ENST00000398729 HRCP23327 699 aa19.76■□□□□ 0.75
VCX3A-202ENST00000398729 FNBP4Q8N3X1 1017 aaPredicted RBP19.75■□□□□ 0.75
VCX3A-202ENST00000398729 USP21Q9UK80 565 aa19.74■□□□□ 0.75
VCX3A-202ENST00000398729 PIK3C2GO75747 1445 aa19.73■□□□□ 0.75
VCX3A-202ENST00000398729 EP400Q96L91 3159 aa19.73■□□□□ 0.75
VCX3A-202ENST00000398729 LAMC1P11047 1609 aa19.72■□□□□ 0.75
VCX3A-202ENST00000398729 TRPC5Q9UL62 973 aaPredicted RBP19.71■□□□□ 0.75
VCX3A-202ENST00000398729 STK26Q9P289 416 aa19.69■□□□□ 0.74
VCX3A-202ENST00000398729 LRPPRCP42704 1394 aaKnown RBP19.69■□□□□ 0.74
VCX3A-202ENST00000398729 MYOM2P54296 1465 aa19.68■□□□□ 0.74
VCX3A-202ENST00000398729 ATAD2Q6PL18 1390 aa19.68■□□□□ 0.74
VCX3A-202ENST00000398729 TECPR2O15040 1411 aa19.68■□□□□ 0.74
VCX3A-202ENST00000398729 TMEM132EQ6IEE7 984 aa19.67■□□□□ 0.74
VCX3A-202ENST00000398729 ABCC11Q96J66 1382 aa19.67■□□□□ 0.74
VCX3A-202ENST00000398729 ATRNO75882 1429 aa19.67■□□□□ 0.74
VCX3A-202ENST00000398729 NRXN1Q9ULB1 1477 aa19.67■□□□□ 0.74
VCX3A-202ENST00000398729 KNDC1Q76NI1 1749 aa19.66■□□□□ 0.74
VCX3A-202ENST00000398729 C14orf93Q9H972 538 aaKnown RBP19.66■□□□□ 0.74
VCX3A-202ENST00000398729 BCL9LQ86UU0 1499 aa19.65■□□□□ 0.74
VCX3A-202ENST00000398729 ESCO1Q5FWF5 840 aa19.64■□□□□ 0.73
VCX3A-202ENST00000398729 YTHDC2Q9H6S0 1430 aaKnown RBP19.64■□□□□ 0.73
VCX3A-202ENST00000398729 CDC42BPGQ6DT37 1551 aa19.63■□□□□ 0.73
VCX3A-202ENST00000398729 CFAP70Q5T0N1 1121 aa19.63■□□□□ 0.73
VCX3A-202ENST00000398729 WAPLQ7Z5K2 1190 aa19.63■□□□□ 0.73
VCX3A-202ENST00000398729 DHX57Q6P158 1386 aaKnown RBP19.62■□□□□ 0.73
VCX3A-202ENST00000398729 FOXO3O43524 673 aa19.62■□□□□ 0.73
VCX3A-202ENST00000398729 XPCQ01831 940 aaPredicted RBP19.62■□□□□ 0.73
VCX3A-202ENST00000398729 ZRANB1Q9UGI0 708 aa19.61■□□□□ 0.73
VCX3A-202ENST00000398729 SIRT1Q96EB6 747 aa19.6■□□□□ 0.73
VCX3A-202ENST00000398729 GJD4Q96KN9 370 aaPredicted RBP19.6■□□□□ 0.73
VCX3A-202ENST00000398729 COL22A1Q8NFW1 1626 aaPredicted RBP19.6■□□□□ 0.73
VCX3A-202ENST00000398729 PLEKHH1Q9ULM0 1364 aa19.59■□□□□ 0.73
VCX3A-202ENST00000398729 NPHP3Q7Z494 1330 aa19.59■□□□□ 0.73
VCX3A-202ENST00000398729 CCDC125Q86Z20 511 aa19.59■□□□□ 0.73
VCX3A-202ENST00000398729 DCAF11Q8TEB1 546 aa19.59■□□□□ 0.73
VCX3A-202ENST00000398729 STAC3Q96MF2 364 aa19.59■□□□□ 0.73
VCX3A-202ENST00000398729 PXDNQ92626 1479 aa19.59■□□□□ 0.73
VCX3A-202ENST00000398729 KDM2AQ9Y2K7 1162 aa19.58■□□□□ 0.72
VCX3A-202ENST00000398729 NUTM2FA1L443 756 aa19.57■□□□□ 0.72
VCX3A-202ENST00000398729 UNC5CLQ8IV45 518 aa19.53■□□□□ 0.72
VCX3A-202ENST00000398729 PRAM1Q96QH2 718 aa19.53■□□□□ 0.72
VCX3A-202ENST00000398729 FMN2Q9NZ56 1722 aa19.53■□□□□ 0.72
VCX3A-202ENST00000398729 ADGRB1O14514 1584 aa19.53■□□□□ 0.72
VCX3A-202ENST00000398729 DLC1Q96QB1 1528 aa19.52■□□□□ 0.72
VCX3A-202ENST00000398729 POGKQ9P215 609 aa19.51■□□□□ 0.71
VCX3A-202ENST00000398729 SPATA31A3Q5VYP0 1347 aa19.51■□□□□ 0.71
VCX3A-202ENST00000398729 SAFB2Q14151 953 aaKnown RBP eCLIP19.5■□□□□ 0.71
VCX3A-202ENST00000398729 SLIT2O94813 1529 aa19.5■□□□□ 0.71
VCX3A-202ENST00000398729 MARF1Q9Y4F3 1742 aaKnown RBP19.49■□□□□ 0.71
VCX3A-202ENST00000398729 TRAK1Q9UPV9 953 aa19.49■□□□□ 0.71
VCX3A-202ENST00000398729 RALGAPBQ86X10 1494 aa19.48■□□□□ 0.71
VCX3A-202ENST00000398729 KRT28Q7Z3Y7 464 aa19.48■□□□□ 0.71
VCX3A-202ENST00000398729 DEFB132Q7Z7B7 95 aa19.48■□□□□ 0.71
VCX3A-202ENST00000398729 KIF1AQ12756 1690 aa19.47■□□□□ 0.71
VCX3A-202ENST00000398729 GLI3P10071 1580 aa19.47■□□□□ 0.71
VCX3A-202ENST00000398729 ONECUT3O60422 494 aaPredicted RBP19.46■□□□□ 0.71
VCX3A-202ENST00000398729 SEPT12Q8IYM1 358 aa19.45■□□□□ 0.7
VCX3A-202ENST00000398729 CABLES1Q8TDN4 633 aa19.45■□□□□ 0.7
VCX3A-202ENST00000398729 BLMP54132 1417 aaPredicted RBP19.44■□□□□ 0.7
VCX3A-202ENST00000398729 RGPD8O14715 1765 aaPredicted RBP19.44■□□□□ 0.7
VCX3A-202ENST00000398729 ADGRB2O60241 1585 aa19.44■□□□□ 0.7
VCX3A-202ENST00000398729 VPS72Q15906 364 aa19.43■□□□□ 0.7
VCX3A-202ENST00000398729 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.42■□□□□ 0.7
VCX3A-202ENST00000398729 PHF8Q9UPP1 1060 aa19.42■□□□□ 0.7
VCX3A-202ENST00000398729 BRWD3Q6RI45 1802 aa19.41■□□□□ 0.7
VCX3A-202ENST00000398729 ANKARQ7Z5J8 1434 aa19.41■□□□□ 0.7
VCX3A-202ENST00000398729 KIAA1210Q9ULL0 1709 aa19.4■□□□□ 0.7
VCX3A-202ENST00000398729 HIRIP3Q9BW71 556 aaPredicted RBP19.4■□□□□ 0.7
VCX3A-202ENST00000398729 MINK1Q8N4C8 1332 aaPredicted RBP19.4■□□□□ 0.7
VCX3A-202ENST00000398729 FAM83GA6ND36 823 aa19.39■□□□□ 0.69
VCX3A-202ENST00000398729 EIF3AQ14152 1382 aaKnown RBP19.39■□□□□ 0.69
VCX3A-202ENST00000398729 ARHGEF28Q8N1W1 1705 aaKnown RBP19.39■□□□□ 0.69
VCX3A-202ENST00000398729 PLEKHG5O94827 1062 aa19.38■□□□□ 0.69
VCX3A-202ENST00000398729 PSME1Q06323 249 aa19.38■□□□□ 0.69
VCX3A-202ENST00000398729 USP32Q8NFA0 1604 aa19.37■□□□□ 0.69
VCX3A-202ENST00000398729 KRT27Q7Z3Y8 459 aa19.37■□□□□ 0.69
VCX3A-202ENST00000398729 WASLO00401 505 aaPredicted RBP19.36■□□□□ 0.69
VCX3A-202ENST00000398729 TULP4Q9NRJ4 1543 aa19.35■□□□□ 0.69
VCX3A-202ENST00000398729 TNS3Q68CZ2 1445 aa19.35■□□□□ 0.69
VCX3A-202ENST00000398729 HAP1P54257 671 aaPredicted RBP19.35■□□□□ 0.69
VCX3A-202ENST00000398729 SF3B2Q13435 895 aaKnown RBP19.35■□□□□ 0.69
VCX3A-202ENST00000398729 PMFBP1Q8TBY8 1022 aa19.35■□□□□ 0.69
VCX3A-202ENST00000398729 LMOD2Q6P5Q4 547 aa19.34■□□□□ 0.69
VCX3A-202ENST00000398729 SBNO1A3KN83 1393 aa19.33■□□□□ 0.69
VCX3A-202ENST00000398729 NBPF1Q3BBV0 1214 aa19.33■□□□□ 0.68
VCX3A-202ENST00000398729 L3MBTL2Q969R5 705 aa19.33■□□□□ 0.68
VCX3A-202ENST00000398729 SIN3AQ96ST3 1273 aa19.33■□□□□ 0.68
VCX3A-202ENST00000398729 CCDC9Q9Y3X0 531 aaKnown RBP19.33■□□□□ 0.68
VCX3A-202ENST00000398729 PRR36Q9H6K5 1346 aa19.32■□□□□ 0.68
VCX3A-202ENST00000398729 NEUROD1Q13562 356 aa19.31■□□□□ 0.68
VCX3A-202ENST00000398729 PSDA5PKW4 1024 aaPredicted RBP19.3■□□□□ 0.68
VCX3A-202ENST00000398729 ARHGEF10O15013 1369 aa19.3■□□□□ 0.68
VCX3A-202ENST00000398729 GPRASP1Q5JY77 1395 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms