RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 NF2P35240 595 aa12.37□□□□□ -0.43
COL4A4-201ENST00000396625 ERLIN1O75477 346 aa12.36□□□□□ -0.43
COL4A4-201ENST00000396625 FOXD1Q16676 465 aa12.36□□□□□ -0.43
COL4A4-201ENST00000396625 INTS3Q68E01 1043 aaKnown RBP12.36□□□□□ -0.43
COL4A4-201ENST00000396625 LRRCC1Q9C099 1032 aa12.36□□□□□ -0.43
COL4A4-201ENST00000396625 RNF214Q8ND24 703 aa12.36□□□□□ -0.43
COL4A4-201ENST00000396625 SLC26A8Q96RN1 970 aa12.36□□□□□ -0.43
COL4A4-201ENST00000396625 BCL2L13Q9BXK5 485 aa12.36□□□□□ -0.43
COL4A4-201ENST00000396625 PLIN1O60240 522 aa12.36□□□□□ -0.43
COL4A4-201ENST00000396625 TMEM132AQ24JP5 1023 aa12.36□□□□□ -0.43
COL4A4-201ENST00000396625 RBM33Q96EV2 1170 aaKnown RBP12.36□□□□□ -0.43
COL4A4-201ENST00000396625 VPS8Q8N3P4 1428 aa12.36□□□□□ -0.43
COL4A4-201ENST00000396625 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.35□□□□□ -0.43
COL4A4-201ENST00000396625 SPC24Q8NBT2 197 aa12.35□□□□□ -0.43
COL4A4-201ENST00000396625 ZNHIT6Q9NWK9 470 aaKnown RBP12.35□□□□□ -0.43
COL4A4-201ENST00000396625 BRPF1P55201 1214 aaPredicted RBP12.35□□□□□ -0.43
COL4A4-201ENST00000396625 CCDC181Q5TID7 509 aa12.35□□□□□ -0.43
COL4A4-201ENST00000396625 LTV1Q96GA3 475 aaPredicted RBP12.35□□□□□ -0.43
COL4A4-201ENST00000396625 LUC7LQ9NQ29 371 aaKnown RBP12.35□□□□□ -0.43
COL4A4-201ENST00000396625 FILIP1LQ4L180 1135 aa12.35□□□□□ -0.43
COL4A4-201ENST00000396625 CAVIN1Q6NZI2 390 aaKnown RBP12.35□□□□□ -0.43
COL4A4-201ENST00000396625 XBP1P17861 261 aa12.35□□□□□ -0.43
COL4A4-201ENST00000396625 UQCRHLA0A096LP55 91 aa12.34□□□□□ -0.43
COL4A4-201ENST00000396625 UQCRHP07919 91 aa12.34□□□□□ -0.43
COL4A4-201ENST00000396625 CDK5RAP3Q96JB5 506 aa12.34□□□□□ -0.43
COL4A4-201ENST00000396625 RALYLQ86SE5 291 aaKnown RBP12.34□□□□□ -0.43
COL4A4-201ENST00000396625 TXLNBQ8N3L3 684 aa12.34□□□□□ -0.43
COL4A4-201ENST00000396625 CRBNQ96SW2 442 aa12.34□□□□□ -0.43
COL4A4-201ENST00000396625 PKD2Q13563 968 aa12.34□□□□□ -0.43
COL4A4-201ENST00000396625 C1orf141Q5JVX7 400 aa12.33□□□□□ -0.43
COL4A4-201ENST00000396625 SAMD1Q6SPF0 538 aaPredicted RBP12.33□□□□□ -0.43
COL4A4-201ENST00000396625 ERCC6Q03468 1493 aa12.33□□□□□ -0.44
COL4A4-201ENST00000396625 GOLGA6L10A0A0M3HER8 536 aa12.33□□□□□ -0.44
COL4A4-201ENST00000396625 DDX19BQ9UMR2 479 aa12.33□□□□□ -0.44
COL4A4-201ENST00000396625 CEP63Q96MT8 703 aa12.33□□□□□ -0.44
COL4A4-201ENST00000396625 MYBBP1AQ9BQG0 1328 aaKnown RBP12.33□□□□□ -0.44
COL4A4-201ENST00000396625 E9PSI1 815 aa12.32□□□□□ -0.44
COL4A4-201ENST00000396625 TXLNAP40222 546 aa12.32□□□□□ -0.44
COL4A4-201ENST00000396625 ZBED9Q6R2W3 1325 aa12.32□□□□□ -0.44
COL4A4-201ENST00000396625 WWC2Q6AWC2 1192 aa12.32□□□□□ -0.44
COL4A4-201ENST00000396625 RRP9O43818 475 aaKnown RBP12.32□□□□□ -0.44
COL4A4-201ENST00000396625 C22orf23Q9BZE7 217 aa12.32□□□□□ -0.44
COL4A4-201ENST00000396625 NFKBIBQ15653 356 aa12.32□□□□□ -0.44
COL4A4-201ENST00000396625 DHX8Q14562 1220 aaKnown RBP12.31□□□□□ -0.44
COL4A4-201ENST00000396625 CCDC112Q8NEF3 446 aa12.31□□□□□ -0.44
COL4A4-201ENST00000396625 ERC2O15083 957 aa12.31□□□□□ -0.44
COL4A4-201ENST00000396625 BRPF3Q9ULD4 1205 aa12.31□□□□□ -0.44
COL4A4-201ENST00000396625 RAB3GAP2Q9H2M9 1393 aa12.31□□□□□ -0.44
COL4A4-201ENST00000396625 FMNL2Q96PY5 1086 aa12.31□□□□□ -0.44
COL4A4-201ENST00000396625 CCDC27Q2M243 656 aa12.31□□□□□ -0.44
COL4A4-201ENST00000396625 CCDC91Q7Z6B0 441 aa12.31□□□□□ -0.44
COL4A4-201ENST00000396625 PIP4K2AP48426 406 aaPredicted RBP12.31□□□□□ -0.44
COL4A4-201ENST00000396625 DDX11Q96FC9 970 aa12.31□□□□□ -0.44
COL4A4-201ENST00000396625 TICAM2Q86XR7 235 aa12.31□□□□□ -0.44
COL4A4-201ENST00000396625 CCDC102AQ96A19 550 aa12.3□□□□□ -0.44
COL4A4-201ENST00000396625 TTC5Q8N0Z6 440 aa12.3□□□□□ -0.44
COL4A4-201ENST00000396625 PPFIBP1Q86W92 1011 aa12.3□□□□□ -0.44
COL4A4-201ENST00000396625 MBD3O95983 291 aa12.3□□□□□ -0.44
COL4A4-201ENST00000396625 NGDNQ8NEJ9 315 aaKnown RBP12.3□□□□□ -0.44
COL4A4-201ENST00000396625 G3BP1Q13283 466 aaKnown RBP eCLIP12.29□□□□□ -0.44
COL4A4-201ENST00000396625 BCCIPQ9P287 314 aaKnown RBP eCLIP12.29□□□□□ -0.44
COL4A4-201ENST00000396625 PSMA5P28066 241 aa12.29□□□□□ -0.44
COL4A4-201ENST00000396625 EXOC6Q8TAG9 804 aa12.29□□□□□ -0.44
COL4A4-201ENST00000396625 COG6Q9Y2V7 657 aa12.29□□□□□ -0.44
COL4A4-201ENST00000396625 AEBP1Q8IUX7 1158 aa12.29□□□□□ -0.44
COL4A4-201ENST00000396625 ABCC8Q09428 1581 aa12.29□□□□□ -0.44
COL4A4-201ENST00000396625 SPATA24Q86W54 205 aa12.29□□□□□ -0.44
COL4A4-201ENST00000396625 SERPINC1P01008 464 aa12.29□□□□□ -0.44
COL4A4-201ENST00000396625 LRRFIP2Q9Y608 721 aaKnown RBP12.29□□□□□ -0.44
COL4A4-201ENST00000396625 KRT18P05783 430 aaKnown RBP12.29□□□□□ -0.44
COL4A4-201ENST00000396625 STIM1Q13586 685 aa12.28□□□□□ -0.44
COL4A4-201ENST00000396625 CCDC97Q96F63 343 aaPredicted RBP12.28□□□□□ -0.44
COL4A4-201ENST00000396625 NGEFQ8N5V2 710 aa12.28□□□□□ -0.44
COL4A4-201ENST00000396625 FYB1O15117 783 aa12.28□□□□□ -0.44
COL4A4-201ENST00000396625 FAM177A1Q8N128 213 aaPredicted RBP12.28□□□□□ -0.44
COL4A4-201ENST00000396625 NUP155O75694 1391 aa12.27□□□□□ -0.44
COL4A4-201ENST00000396625 PDCP20941 246 aa12.27□□□□□ -0.45
COL4A4-201ENST00000396625 HSP90AB4PQ58FF6 505 aa12.27□□□□□ -0.45
COL4A4-201ENST00000396625 RSPH4AQ5TD94 716 aa12.27□□□□□ -0.45
COL4A4-201ENST00000396625 TRAK2O60296 914 aa12.27□□□□□ -0.45
COL4A4-201ENST00000396625 SART3Q15020 963 aaKnown RBP12.27□□□□□ -0.45
COL4A4-201ENST00000396625 ZNF396Q96N95 335 aaPredicted RBP12.27□□□□□ -0.45
COL4A4-201ENST00000396625 PRKCSHP14314 528 aaPredicted RBP12.27□□□□□ -0.45
COL4A4-201ENST00000396625 CCDC192P0DO97 292 aa12.27□□□□□ -0.45
COL4A4-201ENST00000396625 RBM25P49756 843 aaKnown RBP12.27□□□□□ -0.45
COL4A4-201ENST00000396625 SHTN1A0MZ66 631 aa12.26□□□□□ -0.45
COL4A4-201ENST00000396625 TMCO3Q6UWJ1 677 aa12.26□□□□□ -0.45
COL4A4-201ENST00000396625 KIF3BO15066 747 aa12.26□□□□□ -0.45
COL4A4-201ENST00000396625 CFAP45Q9UL16 551 aa12.26□□□□□ -0.45
COL4A4-201ENST00000396625 STAMBPO95630 424 aa12.26□□□□□ -0.45
COL4A4-201ENST00000396625 IKQ13123 557 aaPredicted RBP12.26□□□□□ -0.45
COL4A4-201ENST00000396625 ELL2O00472 640 aaPredicted RBP12.26□□□□□ -0.45
COL4A4-201ENST00000396625 MSH5O43196 834 aa12.26□□□□□ -0.45
COL4A4-201ENST00000396625 KDM4AO75164 1064 aa12.25□□□□□ -0.45
COL4A4-201ENST00000396625 EIF2S2P20042 333 aaKnown RBP12.25□□□□□ -0.45
COL4A4-201ENST00000396625 MAP2K1Q02750 393 aaPredicted RBP12.25□□□□□ -0.45
COL4A4-201ENST00000396625 SOGA1O94964 1423 aa12.25□□□□□ -0.45
COL4A4-201ENST00000396625 GPATCH11Q8N954 259 aa12.25□□□□□ -0.45
COL4A4-201ENST00000396625 SEPT11Q9NVA2 429 aaKnown RBP12.25□□□□□ -0.45
COL4A4-201ENST00000396625 DZIP1LQ8IYY4 767 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms