RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 PHF14O94880 888 aa17.54■□□□□ 0.4
RTF1-201ENST00000389629 CTTNBP2Q8WZ74 1663 aa17.53■□□□□ 0.4
RTF1-201ENST00000389629 MINK1Q8N4C8 1332 aaPredicted RBP17.53■□□□□ 0.4
RTF1-201ENST00000389629 GOLGA6L6A8MZA4 724 aa17.53■□□□□ 0.4
RTF1-201ENST00000389629 RARSP54136 660 aaKnown RBP17.53■□□□□ 0.4
RTF1-201ENST00000389629 ZNF771Q7L3S4 317 aaPredicted RBP17.53■□□□□ 0.4
RTF1-201ENST00000389629 MAP7D2Q96T17 732 aa17.53■□□□□ 0.4
RTF1-201ENST00000389629 NOB1Q9ULX3 412 aaKnown RBP17.53■□□□□ 0.4
RTF1-201ENST00000389629 NUCB2P80303 420 aa17.52■□□□□ 0.4
RTF1-201ENST00000389629 BCL11BQ9C0K0 894 aaPredicted RBP17.52■□□□□ 0.4
RTF1-201ENST00000389629 PRPF40AO75400 957 aaKnown RBP17.52■□□□□ 0.39
RTF1-201ENST00000389629 CABP2Q9NPB3 220 aa17.52■□□□□ 0.39
RTF1-201ENST00000389629 SPATA31E1Q6ZUB1 1445 aa17.52■□□□□ 0.39
RTF1-201ENST00000389629 WDR63Q8IWG1 891 aa17.51■□□□□ 0.39
RTF1-201ENST00000389629 C1orf115Q9H7X2 142 aa17.51■□□□□ 0.39
RTF1-201ENST00000389629 RTF1Q92541 710 aaKnown RBP17.51■□□□□ 0.39
RTF1-201ENST00000389629 PER1O15534 1290 aaPredicted RBP17.5■□□□□ 0.39
RTF1-201ENST00000389629 RRAGDQ9NQL2 400 aaPredicted RBP17.5■□□□□ 0.39
RTF1-201ENST00000389629 HMMRO75330 724 aa17.5■□□□□ 0.39
RTF1-201ENST00000389629 SYNJ2O15056 1496 aa17.5■□□□□ 0.39
RTF1-201ENST00000389629 DNAJC5BQ9UF47 199 aa17.5■□□□□ 0.39
RTF1-201ENST00000389629 PLEKHH1Q9ULM0 1364 aa17.49■□□□□ 0.39
RTF1-201ENST00000389629 GPATCH8Q9UKJ3 1502 aaKnown RBP17.49■□□□□ 0.39
RTF1-201ENST00000389629 NRDCO43847 1150 aa17.49■□□□□ 0.39
RTF1-201ENST00000389629 UQCRHLA0A096LP55 91 aa17.49■□□□□ 0.39
RTF1-201ENST00000389629 UQCRHP07919 91 aa17.49■□□□□ 0.39
RTF1-201ENST00000389629 ISY1Q9ULR0 285 aaKnown RBP17.48■□□□□ 0.39
RTF1-201ENST00000389629 PZPP20742 1482 aa17.48■□□□□ 0.39
RTF1-201ENST00000389629 HMOX1P09601 288 aa17.48■□□□□ 0.39
RTF1-201ENST00000389629 ATF7IPQ6VMQ6 1270 aa17.48■□□□□ 0.39
RTF1-201ENST00000389629 RILPL2Q969X0 211 aa17.48■□□□□ 0.39
RTF1-201ENST00000389629 SEC24BO95487 1268 aa17.47■□□□□ 0.39
RTF1-201ENST00000389629 LMOD3Q0VAK6 560 aa17.47■□□□□ 0.39
RTF1-201ENST00000389629 ZSCAN30Q86W11 494 aa17.47■□□□□ 0.39
RTF1-201ENST00000389629 VGFO15240 615 aaPredicted RBP17.47■□□□□ 0.39
RTF1-201ENST00000389629 CHMP3Q9Y3E7 222 aa17.47■□□□□ 0.39
RTF1-201ENST00000389629 CLCN1P35523 988 aa17.46■□□□□ 0.39
RTF1-201ENST00000389629 TNNT3P45378 269 aaPredicted RBP17.46■□□□□ 0.39
RTF1-201ENST00000389629 CCDC39Q9UFE4 941 aa17.46■□□□□ 0.39
RTF1-201ENST00000389629 CDC45O75419 566 aa17.46■□□□□ 0.39
RTF1-201ENST00000389629 ZNF592Q92610 1267 aa17.46■□□□□ 0.39
RTF1-201ENST00000389629 TESK2Q96S53 571 aa17.46■□□□□ 0.39
RTF1-201ENST00000389629 PRDM10Q9NQV6 1147 aa17.46■□□□□ 0.39
RTF1-201ENST00000389629 MAGI1Q96QZ7 1491 aaPredicted RBP17.46■□□□□ 0.39
RTF1-201ENST00000389629 TBC1D32Q96NH3 1257 aa17.46■□□□□ 0.39
RTF1-201ENST00000389629 SCAPERQ9BY12 1400 aa17.46■□□□□ 0.38
RTF1-201ENST00000389629 CCDC141Q6ZP82 1450 aa17.45■□□□□ 0.38
RTF1-201ENST00000389629 MTERF4Q7Z6M4 381 aaKnown RBP17.44■□□□□ 0.38
RTF1-201ENST00000389629 PCDHB15Q9Y5E8 787 aa17.44■□□□□ 0.38
RTF1-201ENST00000389629 KDM2BQ8NHM5 1336 aa17.44■□□□□ 0.38
RTF1-201ENST00000389629 REC8O95072 547 aa17.44■□□□□ 0.38
RTF1-201ENST00000389629 MLECQ14165 292 aa17.44■□□□□ 0.38
RTF1-201ENST00000389629 API5Q9BZZ5 524 aaKnown RBP17.44■□□□□ 0.38
RTF1-201ENST00000389629 KDM6BO15054 1643 aa17.43■□□□□ 0.38
RTF1-201ENST00000389629 STK31Q9BXU1 1019 aa17.43■□□□□ 0.38
RTF1-201ENST00000389629 SPINK5Q9NQ38 1064 aaPredicted RBP17.43■□□□□ 0.38
RTF1-201ENST00000389629 MRC2Q9UBG0 1479 aa17.43■□□□□ 0.38
RTF1-201ENST00000389629 INTS3Q68E01 1043 aaKnown RBP17.43■□□□□ 0.38
RTF1-201ENST00000389629 PRAG1Q86YV5 1406 aa17.43■□□□□ 0.38
RTF1-201ENST00000389629 TMEM57Q8N5G2 664 aa17.43■□□□□ 0.38
RTF1-201ENST00000389629 PDCL3Q9H2J4 239 aa17.43■□□□□ 0.38
RTF1-201ENST00000389629 XPCQ01831 940 aaPredicted RBP17.42■□□□□ 0.38
RTF1-201ENST00000389629 IFT140Q96RY7 1462 aa17.42■□□□□ 0.38
RTF1-201ENST00000389629 K7ELQ4 463 aaPredicted RBP17.42■□□□□ 0.38
RTF1-201ENST00000389629 CHD1LQ86WJ1 897 aa17.42■□□□□ 0.38
RTF1-201ENST00000389629 NUP153P49790 1475 aaKnown RBP17.42■□□□□ 0.38
RTF1-201ENST00000389629 MAGI3Q5TCQ9 1506 aa17.42■□□□□ 0.38
RTF1-201ENST00000389629 NSD3Q9BZ95 1437 aa17.41■□□□□ 0.38
RTF1-201ENST00000389629 TNPO1Q92973 898 aaKnown RBP17.41■□□□□ 0.38
RTF1-201ENST00000389629 TNNQ9UQP3 1299 aa17.41■□□□□ 0.38
RTF1-201ENST00000389629 SSH1Q8WYL5 1049 aa17.4■□□□□ 0.38
RTF1-201ENST00000389629 ANO2Q9NQ90 1003 aa17.4■□□□□ 0.38
RTF1-201ENST00000389629 GNAI1P63096 354 aa17.4■□□□□ 0.38
RTF1-201ENST00000389629 PRKAR2BP31323 418 aa17.39■□□□□ 0.37
RTF1-201ENST00000389629 LAMC3Q9Y6N6 1575 aa17.38■□□□□ 0.37
RTF1-201ENST00000389629 GCC1Q96CN9 775 aa17.38■□□□□ 0.37
RTF1-201ENST00000389629 CIZ1Q9ULV3 898 aaPredicted RBP17.38■□□□□ 0.37
RTF1-201ENST00000389629 CT47B1P0C2W7 299 aaPredicted RBP17.38■□□□□ 0.37
RTF1-201ENST00000389629 NUTM2FA1L443 756 aa17.38■□□□□ 0.37
RTF1-201ENST00000389629 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.37■□□□□ 0.37
RTF1-201ENST00000389629 SSFA2P28290 1259 aa17.37■□□□□ 0.37
RTF1-201ENST00000389629 UHRF1BP1Q6BDS2 1440 aa17.37■□□□□ 0.37
RTF1-201ENST00000389629 RABEP1Q15276 862 aa17.36■□□□□ 0.37
RTF1-201ENST00000389629 GCC2Q8IWJ2 1684 aa17.36■□□□□ 0.37
RTF1-201ENST00000389629 WDR62O43379 1518 aa17.36■□□□□ 0.37
RTF1-201ENST00000389629 TMPOP42166 694 aaKnown RBP17.36■□□□□ 0.37
RTF1-201ENST00000389629 NEK4P51957 841 aa17.36■□□□□ 0.37
RTF1-201ENST00000389629 RLBP1P12271 317 aa17.35■□□□□ 0.37
RTF1-201ENST00000389629 TRIM27P14373 513 aa17.35■□□□□ 0.37
RTF1-201ENST00000389629 DNMT1P26358 1616 aaKnown RBP17.35■□□□□ 0.37
RTF1-201ENST00000389629 KIF14Q15058 1648 aa17.35■□□□□ 0.37
RTF1-201ENST00000389629 IFT57Q9NWB7 429 aa17.35■□□□□ 0.37
RTF1-201ENST00000389629 ZHX1Q9UKY1 873 aaPredicted RBP17.35■□□□□ 0.37
RTF1-201ENST00000389629 TSPY26PQ9H489 355 aa17.35■□□□□ 0.37
RTF1-201ENST00000389629 COG3Q96JB2 828 aa17.34■□□□□ 0.37
RTF1-201ENST00000389629 GRIN2AQ12879 1464 aa17.34■□□□□ 0.37
RTF1-201ENST00000389629 ZNF608Q9ULD9 1512 aaPredicted RBP17.34■□□□□ 0.37
RTF1-201ENST00000389629 SYCE3A1L190 88 aa17.33■□□□□ 0.37
RTF1-201ENST00000389629 RAPGEF6Q8TEU7 1601 aa17.33■□□□□ 0.36
RTF1-201ENST00000389629 ADGRF5Q8IZF2 1346 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms