RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 IGHDP01880 384 aa21.07■□□□□ 0.96
NKX3-1-201ENST00000380871 MLH3Q9UHC1 1453 aa21.07■□□□□ 0.96
NKX3-1-201ENST00000380871 POGKQ9P215 609 aa21.07■□□□□ 0.96
NKX3-1-201ENST00000380871 MAP3K4Q9Y6R4 1608 aa21.06■□□□□ 0.96
NKX3-1-201ENST00000380871 KIF1BO60333 1816 aa21.06■□□□□ 0.96
NKX3-1-201ENST00000380871 NSD3Q9BZ95 1437 aa21.06■□□□□ 0.96
NKX3-1-201ENST00000380871 MROH2AA6NES4 1674 aa21.06■□□□□ 0.96
NKX3-1-201ENST00000380871 DAXXQ9UER7 740 aaPredicted RBP21.05■□□□□ 0.96
NKX3-1-201ENST00000380871 FRMPD1Q5SYB0 1578 aa21.05■□□□□ 0.96
NKX3-1-201ENST00000380871 KDM5AP29375 1690 aaKnown RBP21.05■□□□□ 0.96
NKX3-1-201ENST00000380871 PANK1Q8TE04 598 aa21.03■□□□□ 0.96
NKX3-1-201ENST00000380871 HECW2Q9P2P5 1572 aa21.03■□□□□ 0.96
NKX3-1-201ENST00000380871 NPC1L1Q9UHC9 1359 aa21.03■□□□□ 0.96
NKX3-1-201ENST00000380871 SLC24A1O60721 1099 aa21.03■□□□□ 0.96
NKX3-1-201ENST00000380871 MTHFSP49914 203 aa21.03■□□□□ 0.96
NKX3-1-201ENST00000380871 E9PSI1 815 aa21.02■□□□□ 0.96
NKX3-1-201ENST00000380871 MYOM2P54296 1465 aa21.02■□□□□ 0.96
NKX3-1-201ENST00000380871 COG6Q9Y2V7 657 aa21.02■□□□□ 0.95
NKX3-1-201ENST00000380871 ABCC3O15438 1527 aa21.01■□□□□ 0.95
NKX3-1-201ENST00000380871 EVC2Q86UK5 1308 aa21■□□□□ 0.95
NKX3-1-201ENST00000380871 PRAM1Q96QH2 718 aa21■□□□□ 0.95
NKX3-1-201ENST00000380871 GGNBP2Q9H3C7 697 aa21■□□□□ 0.95
NKX3-1-201ENST00000380871 BRPF3Q9ULD4 1205 aa21■□□□□ 0.95
NKX3-1-201ENST00000380871 RPGRIP1LQ68CZ1 1315 aa20.99■□□□□ 0.95
NKX3-1-201ENST00000380871 FRAT1Q92837 279 aaPredicted RBP20.99■□□□□ 0.95
NKX3-1-201ENST00000380871 WWC1Q8IX03 1113 aa20.98■□□□□ 0.95
NKX3-1-201ENST00000380871 SEC24BO95487 1268 aa20.98■□□□□ 0.95
NKX3-1-201ENST00000380871 GSE1Q14687 1217 aa20.98■□□□□ 0.95
NKX3-1-201ENST00000380871 TNNQ9UQP3 1299 aa20.98■□□□□ 0.95
NKX3-1-201ENST00000380871 CANXP27824 592 aaKnown RBP20.98■□□□□ 0.95
NKX3-1-201ENST00000380871 FRAT2O75474 233 aaPredicted RBP20.97■□□□□ 0.95
NKX3-1-201ENST00000380871 U2SURPO15042 1029 aaKnown RBP20.96■□□□□ 0.95
NKX3-1-201ENST00000380871 NEO1Q92859 1461 aa20.96■□□□□ 0.95
NKX3-1-201ENST00000380871 U2AF1L5P0DN76 240 aaPredicted RBP20.96■□□□□ 0.95
NKX3-1-201ENST00000380871 U2AF1Q01081 240 aaKnown RBP eCLIP20.96■□□□□ 0.95
NKX3-1-201ENST00000380871 BCL2L13Q9BXK5 485 aa20.96■□□□□ 0.95
NKX3-1-201ENST00000380871 ADGRB3O60242 1522 aa20.96■□□□□ 0.95
NKX3-1-201ENST00000380871 SLC52A1Q9NWF4 448 aa20.96■□□□□ 0.95
NKX3-1-201ENST00000380871 CGNL1Q0VF96 1302 aa20.95■□□□□ 0.94
NKX3-1-201ENST00000380871 LMTK2Q8IWU2 1503 aa20.95■□□□□ 0.94
NKX3-1-201ENST00000380871 USP19O94966 1318 aa20.94■□□□□ 0.94
NKX3-1-201ENST00000380871 ESF1Q9H501 851 aaKnown RBP20.94■□□□□ 0.94
NKX3-1-201ENST00000380871 ANO8Q9HCE9 1232 aaPredicted RBP20.94■□□□□ 0.94
NKX3-1-201ENST00000380871 CLUAP1Q96AJ1 413 aa20.93■□□□□ 0.94
NKX3-1-201ENST00000380871 FBLN1P23142 703 aa20.93■□□□□ 0.94
NKX3-1-201ENST00000380871 WAPLQ7Z5K2 1190 aa20.93■□□□□ 0.94
NKX3-1-201ENST00000380871 TCP11L2Q8N4U5 519 aa20.92■□□□□ 0.94
NKX3-1-201ENST00000380871 KIAA1210Q9ULL0 1709 aa20.92■□□□□ 0.94
NKX3-1-201ENST00000380871 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.92■□□□□ 0.94
NKX3-1-201ENST00000380871 CFAP74Q9C0B2 1584 aa20.92■□□□□ 0.94
NKX3-1-201ENST00000380871 CFAP53Q96M91 514 aa20.91■□□□□ 0.94
NKX3-1-201ENST00000380871 RLBP1P12271 317 aa20.91■□□□□ 0.94
NKX3-1-201ENST00000380871 DIP2CQ9Y2E4 1556 aa20.9■□□□□ 0.94
NKX3-1-201ENST00000380871 TSPOAP1O95153 1857 aa20.9■□□□□ 0.94
NKX3-1-201ENST00000380871 PDE3AQ14432 1141 aa20.89■□□□□ 0.94
NKX3-1-201ENST00000380871 POLR3AO14802 1390 aaPredicted RBP20.89■□□□□ 0.93
NKX3-1-201ENST00000380871 NRXN1Q9ULB1 1477 aa20.89■□□□□ 0.93
NKX3-1-201ENST00000380871 RARSP54136 660 aaKnown RBP20.87■□□□□ 0.93
NKX3-1-201ENST00000380871 CABP1Q9NZU7 370 aa20.87■□□□□ 0.93
NKX3-1-201ENST00000380871 PCDHB15Q9Y5E8 787 aa20.87■□□□□ 0.93
NKX3-1-201ENST00000380871 SHPRHQ149N8 1683 aa20.87■□□□□ 0.93
NKX3-1-201ENST00000380871 SIGLEC1Q9BZZ2 1709 aa20.87■□□□□ 0.93
NKX3-1-201ENST00000380871 CDK19Q9BWU1 502 aa20.86■□□□□ 0.93
NKX3-1-201ENST00000380871 SBNO2Q9Y2G9 1366 aa20.86■□□□□ 0.93
NKX3-1-201ENST00000380871 CAMSAP1Q5T5Y3 1602 aa20.85■□□□□ 0.93
NKX3-1-201ENST00000380871 RUNDC1Q96C34 613 aa20.85■□□□□ 0.93
NKX3-1-201ENST00000380871 ADGRB1O14514 1584 aa20.84■□□□□ 0.93
NKX3-1-201ENST00000380871 NUTM2FA1L443 756 aa20.84■□□□□ 0.93
NKX3-1-201ENST00000380871 IFT172Q9UG01 1749 aa20.83■□□□□ 0.93
NKX3-1-201ENST00000380871 SLKQ9H2G2 1235 aaPredicted RBP20.83■□□□□ 0.93
NKX3-1-201ENST00000380871 VIRMAQ69YN4 1812 aaKnown RBP20.82■□□□□ 0.92
NKX3-1-201ENST00000380871 TXNDC2Q86VQ3 553 aa20.81■□□□□ 0.92
NKX3-1-201ENST00000380871 TERF2IPQ9NYB0 399 aa20.81■□□□□ 0.92
NKX3-1-201ENST00000380871 PPLO60437 1756 aa20.81■□□□□ 0.92
NKX3-1-201ENST00000380871 A0A1W2PP64 1363 aa20.81■□□□□ 0.92
NKX3-1-201ENST00000380871 IQSEC2Q5JU85 1478 aa20.81■□□□□ 0.92
NKX3-1-201ENST00000380871 QRICH2Q9H0J4 1663 aa20.8■□□□□ 0.92
NKX3-1-201ENST00000380871 MAPK8IP3Q9UPT6 1336 aa20.8■□□□□ 0.92
NKX3-1-201ENST00000380871 NLRP1Q9C000 1473 aa20.8■□□□□ 0.92
NKX3-1-201ENST00000380871 NGEFQ8N5V2 710 aa20.8■□□□□ 0.92
NKX3-1-201ENST00000380871 MYO3AQ8NEV4 1616 aa20.8■□□□□ 0.92
NKX3-1-201ENST00000380871 GLI2P10070 1586 aa20.79■□□□□ 0.92
NKX3-1-201ENST00000380871 HDGFL2Q7Z4V5 671 aaPredicted RBP20.79■□□□□ 0.92
NKX3-1-201ENST00000380871 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.79■□□□□ 0.92
NKX3-1-201ENST00000380871 NEXMIFQ5QGS0 1516 aa20.79■□□□□ 0.92
NKX3-1-201ENST00000380871 NEURL4Q96JN8 1562 aa20.79■□□□□ 0.92
NKX3-1-201ENST00000380871 NCKAP5LQ9HCH0 1330 aa20.79■□□□□ 0.92
NKX3-1-201ENST00000380871 FYB1O15117 783 aa20.79■□□□□ 0.92
NKX3-1-201ENST00000380871 ANKRD36BQ8N2N9 1353 aa20.78■□□□□ 0.92
NKX3-1-201ENST00000380871 TSR2Q969E8 191 aaKnown RBP20.78■□□□□ 0.92
NKX3-1-201ENST00000380871 PDZRN3Q9UPQ7 1066 aa20.78■□□□□ 0.92
NKX3-1-201ENST00000380871 PHF23Q9BUL5 403 aaPredicted RBP20.78■□□□□ 0.92
NKX3-1-201ENST00000380871 NINLQ9Y2I6 1382 aa20.78■□□□□ 0.92
NKX3-1-201ENST00000380871 SETBP1Q9Y6X0 1596 aa20.77■□□□□ 0.91
NKX3-1-201ENST00000380871 TULP4Q9NRJ4 1543 aa20.76■□□□□ 0.91
NKX3-1-201ENST00000380871 YTHDC2Q9H6S0 1430 aaKnown RBP20.76■□□□□ 0.91
NKX3-1-201ENST00000380871 RICTORQ6R327 1708 aa20.76■□□□□ 0.91
NKX3-1-201ENST00000380871 PIK3C2BO00750 1634 aa20.75■□□□□ 0.91
NKX3-1-201ENST00000380871 ARHGAP31Q2M1Z3 1444 aa20.75■□□□□ 0.91
NKX3-1-201ENST00000380871 ZRANB1Q9UGI0 708 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms