RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 NRXN3Q9Y4C0 1643 aa16.01■□□□□ 0.15
USP3-202ENST00000380324 TNNT2P45379 298 aaPredicted RBP16.01■□□□□ 0.15
USP3-202ENST00000380324 INSRP06213 1382 aa16.01■□□□□ 0.15
USP3-202ENST00000380324 ANKRD36BQ8N2N9 1353 aa16■□□□□ 0.15
USP3-202ENST00000380324 TRHP20396 242 aaPredicted RBP16■□□□□ 0.15
USP3-202ENST00000380324 UBR1Q8IWV7 1749 aa15.99■□□□□ 0.15
USP3-202ENST00000380324 MORC1Q86VD1 984 aa15.99■□□□□ 0.15
USP3-202ENST00000380324 CDCA7LQ96GN5 454 aa15.99■□□□□ 0.15
USP3-202ENST00000380324 CGNL1Q0VF96 1302 aa15.98■□□□□ 0.15
USP3-202ENST00000380324 A0A1W2PP64 1363 aa15.98■□□□□ 0.15
USP3-202ENST00000380324 PLPPR3Q6T4P5 718 aa15.97■□□□□ 0.15
USP3-202ENST00000380324 PUS7Q96PZ0 661 aaKnown RBP15.97■□□□□ 0.15
USP3-202ENST00000380324 CCDC146Q8IYE0 955 aa15.96■□□□□ 0.15
USP3-202ENST00000380324 FER1L4A9Z1Z3 1794 aa15.96■□□□□ 0.15
USP3-202ENST00000380324 PLEKHH1Q9ULM0 1364 aa15.96■□□□□ 0.14
USP3-202ENST00000380324 CEBPAP49715 358 aaPredicted RBP15.95■□□□□ 0.14
USP3-202ENST00000380324 PDE3BQ13370 1112 aa15.95■□□□□ 0.14
USP3-202ENST00000380324 WAPLQ7Z5K2 1190 aa15.95■□□□□ 0.14
USP3-202ENST00000380324 ATAD2Q6PL18 1390 aa15.95■□□□□ 0.14
USP3-202ENST00000380324 ERICH6BQ5W0A0 696 aa15.95■□□□□ 0.14
USP3-202ENST00000380324 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.95■□□□□ 0.14
USP3-202ENST00000380324 DLC1Q96QB1 1528 aa15.95■□□□□ 0.14
USP3-202ENST00000380324 C3P01024 1663 aa15.95■□□□□ 0.14
USP3-202ENST00000380324 METP08581 1390 aa15.94■□□□□ 0.14
USP3-202ENST00000380324 PPP4R2Q9NY27 417 aa15.94■□□□□ 0.14
USP3-202ENST00000380324 NINLQ9Y2I6 1382 aa15.94■□□□□ 0.14
USP3-202ENST00000380324 SHPRHQ149N8 1683 aa15.94■□□□□ 0.14
USP3-202ENST00000380324 RNF123Q5XPI4 1314 aa15.94■□□□□ 0.14
USP3-202ENST00000380324 TMEM2Q9UHN6 1383 aa15.93■□□□□ 0.14
USP3-202ENST00000380324 CDK19Q9BWU1 502 aa15.93■□□□□ 0.14
USP3-202ENST00000380324 B4GALNT3Q6L9W6 998 aa15.92■□□□□ 0.14
USP3-202ENST00000380324 RCAN3Q9UKA8 241 aa15.92■□□□□ 0.14
USP3-202ENST00000380324 POLR3AO14802 1390 aaPredicted RBP15.92■□□□□ 0.14
USP3-202ENST00000380324 TSHZ2Q9NRE2 1034 aa15.91■□□□□ 0.14
USP3-202ENST00000380324 ABCC11Q96J66 1382 aa15.91■□□□□ 0.14
USP3-202ENST00000380324 CD163L1Q9NR16 1453 aa15.91■□□□□ 0.14
USP3-202ENST00000380324 NSD2O96028 1365 aa15.91■□□□□ 0.14
USP3-202ENST00000380324 KNDC1Q76NI1 1749 aa15.9■□□□□ 0.14
USP3-202ENST00000380324 TERF2IPQ9NYB0 399 aa15.9■□□□□ 0.14
USP3-202ENST00000380324 NLRP1Q9C000 1473 aa15.89■□□□□ 0.13
USP3-202ENST00000380324 HDGFP51858 240 aaKnown RBP15.89■□□□□ 0.13
USP3-202ENST00000380324 TXNDC2Q86VQ3 553 aa15.89■□□□□ 0.13
USP3-202ENST00000380324 ANKRD26Q9UPS8 1709 aa15.89■□□□□ 0.13
USP3-202ENST00000380324 MTHFSP49914 203 aa15.89■□□□□ 0.13
USP3-202ENST00000380324 GGNBP2Q9H3C7 697 aa15.89■□□□□ 0.13
USP3-202ENST00000380324 APAF1O14727 1248 aa15.88■□□□□ 0.13
USP3-202ENST00000380324 RRP1P56182 461 aaKnown RBP15.88■□□□□ 0.13
USP3-202ENST00000380324 CABP1Q9NZU7 370 aa15.88■□□□□ 0.13
USP3-202ENST00000380324 KIF20BQ96Q89 1820 aa15.88■□□□□ 0.13
USP3-202ENST00000380324 CPS1P31327 1500 aa15.86■□□□□ 0.13
USP3-202ENST00000380324 HDGFL2Q7Z4V5 671 aaPredicted RBP15.86■□□□□ 0.13
USP3-202ENST00000380324 ZNF521Q96K83 1311 aa15.85■□□□□ 0.13
USP3-202ENST00000380324 LTKP29376 864 aa15.85■□□□□ 0.13
USP3-202ENST00000380324 ADAMTS13Q76LX8 1427 aa15.85■□□□□ 0.13
USP3-202ENST00000380324 CFAP53Q96M91 514 aa15.84■□□□□ 0.13
USP3-202ENST00000380324 TECPR2O15040 1411 aa15.84■□□□□ 0.13
USP3-202ENST00000380324 GOLGA2Q08379 1002 aa15.84■□□□□ 0.13
USP3-202ENST00000380324 ATP7BP35670 1465 aa15.83■□□□□ 0.12
USP3-202ENST00000380324 FYB1O15117 783 aa15.83■□□□□ 0.12
USP3-202ENST00000380324 PLEKHG1Q9ULL1 1385 aa15.82■□□□□ 0.12
USP3-202ENST00000380324 FAM135BQ49AJ0 1406 aa15.82■□□□□ 0.12
USP3-202ENST00000380324 WASLO00401 505 aaPredicted RBP15.82■□□□□ 0.12
USP3-202ENST00000380324 DUSP27Q5VZP5 1158 aa15.82■□□□□ 0.12
USP3-202ENST00000380324 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.82■□□□□ 0.129e-8■■■■□ 26.3
USP3-202ENST00000380324 PPIP5K1Q6PFW1 1433 aa15.82■□□□□ 0.12
USP3-202ENST00000380324 ROBO2Q9HCK4 1378 aa15.81■□□□□ 0.12
USP3-202ENST00000380324 SLC26A8Q96RN1 970 aa15.81■□□□□ 0.12
USP3-202ENST00000380324 PLIN1O60240 522 aa15.8■□□□□ 0.12
USP3-202ENST00000380324 CCDC136Q96JN2 1154 aa15.8■□□□□ 0.12
USP3-202ENST00000380324 MED14O60244 1454 aa15.8■□□□□ 0.12
USP3-202ENST00000380324 NCKAP5LQ9HCH0 1330 aa15.8■□□□□ 0.12
USP3-202ENST00000380324 NEUROD2Q15784 382 aa15.8■□□□□ 0.12
USP3-202ENST00000380324 EID1Q9Y6B2 187 aa15.8■□□□□ 0.12
USP3-202ENST00000380324 RRP7AQ9Y3A4 280 aaKnown RBP15.79■□□□□ 0.12
USP3-202ENST00000380324 RIMS1Q86UR5 1692 aaKnown RBP15.79■□□□□ 0.12
USP3-202ENST00000380324 SLIT1O75093 1534 aa15.79■□□□□ 0.12
USP3-202ENST00000380324 IQSEC2Q5JU85 1478 aa15.79■□□□□ 0.12
USP3-202ENST00000380324 SPINK5Q9NQ38 1064 aaPredicted RBP15.79■□□□□ 0.12
USP3-202ENST00000380324 ITSN1Q15811 1721 aa15.78■□□□□ 0.12
USP3-202ENST00000380324 DMRT2Q9Y5R5 561 aa15.78■□□□□ 0.12
USP3-202ENST00000380324 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.78■□□□□ 0.12
USP3-202ENST00000380324 U2AF1L5P0DN76 240 aaPredicted RBP15.78■□□□□ 0.12
USP3-202ENST00000380324 U2AF1Q01081 240 aaKnown RBP eCLIP15.78■□□□□ 0.128e-9■□□□□ 10.7
USP3-202ENST00000380324 SLFN5Q08AF3 891 aa15.78■□□□□ 0.12
USP3-202ENST00000380324 EXOC6Q8TAG9 804 aa15.78■□□□□ 0.12
USP3-202ENST00000380324 CDC42BPGQ6DT37 1551 aa15.77■□□□□ 0.12
USP3-202ENST00000380324 RUNDC1Q96C34 613 aa15.77■□□□□ 0.12
USP3-202ENST00000380324 NUDT16Q96DE0 195 aaKnown RBP15.77■□□□□ 0.12
USP3-202ENST00000380324 ARHGAP23Q9P227 1491 aa15.77■□□□□ 0.12
USP3-202ENST00000380324 COL3A1P02461 1466 aaPredicted RBP15.77■□□□□ 0.11
USP3-202ENST00000380324 MON2Q7Z3U7 1717 aa15.76■□□□□ 0.11
USP3-202ENST00000380324 U2SURPO15042 1029 aaKnown RBP15.76■□□□□ 0.11
USP3-202ENST00000380324 CPSF1Q10570 1443 aaKnown RBP15.76■□□□□ 0.11
USP3-202ENST00000380324 TCP11L2Q8N4U5 519 aa15.76■□□□□ 0.11
USP3-202ENST00000380324 PTPRUQ92729 1446 aa15.76■□□□□ 0.11
USP3-202ENST00000380324 NKTRP30414 1462 aaKnown RBP15.75■□□□□ 0.11
USP3-202ENST00000380324 NUTM2FA1L443 756 aa15.75■□□□□ 0.11
USP3-202ENST00000380324 WWC1Q8IX03 1113 aa15.75■□□□□ 0.11
USP3-202ENST00000380324 AKAP12Q02952 1782 aa15.75■□□□□ 0.11
USP3-202ENST00000380324 ADGRB2O60241 1585 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms