RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 RALBP1Q15311 655 aa12.76□□□□□ -0.37
RTN3-206ENST00000377819 SYTL4Q96C24 671 aaPredicted RBP12.76□□□□□ -0.37
RTN3-206ENST00000377819 MAGEC2Q9UBF1 373 aaPredicted RBP12.76□□□□□ -0.37
RTN3-206ENST00000377819 ERICH3Q5RHP9 1530 aa12.76□□□□□ -0.37
RTN3-206ENST00000377819 TTLL5Q6EMB2 1281 aa12.76□□□□□ -0.37
RTN3-206ENST00000377819 PPM1EQ8WY54 764 aa12.76□□□□□ -0.37
RTN3-206ENST00000377819 STAMBPO95630 424 aa12.76□□□□□ -0.37
RTN3-206ENST00000377819 MTERF4Q7Z6M4 381 aaKnown RBP12.76□□□□□ -0.37
RTN3-206ENST00000377819 TRIM21P19474 475 aaKnown RBP12.75□□□□□ -0.37
RTN3-206ENST00000377819 TXLNBQ8N3L3 684 aa12.75□□□□□ -0.37
RTN3-206ENST00000377819 SLC4A3P48751 1232 aa12.75□□□□□ -0.37
RTN3-206ENST00000377819 SART3Q15020 963 aaKnown RBP12.75□□□□□ -0.37
RTN3-206ENST00000377819 DNMBPQ6XZF7 1577 aa12.75□□□□□ -0.37
RTN3-206ENST00000377819 CCDC181Q5TID7 509 aa12.74□□□□□ -0.37
RTN3-206ENST00000377819 CCER2I3L3R5 266 aa12.74□□□□□ -0.37
RTN3-206ENST00000377819 GBP2P32456 591 aaPredicted RBP12.73□□□□□ -0.37
RTN3-206ENST00000377819 CCP110O43303 1012 aa12.73□□□□□ -0.37
RTN3-206ENST00000377819 FAM43AQ8N2R8 423 aa12.73□□□□□ -0.37
RTN3-206ENST00000377819 FEZ1Q99689 392 aa12.73□□□□□ -0.37
RTN3-206ENST00000377819 CCDC27Q2M243 656 aa12.72□□□□□ -0.37
RTN3-206ENST00000377819 CETN2P41208 172 aa12.72□□□□□ -0.37
RTN3-206ENST00000377819 TIMELESSQ9UNS1 1208 aa12.72□□□□□ -0.37
RTN3-206ENST00000377819 THOC2Q8NI27 1593 aaKnown RBP12.72□□□□□ -0.37
RTN3-206ENST00000377819 EEA1Q15075 1411 aa12.72□□□□□ -0.37
RTN3-206ENST00000377819 ELL2O00472 640 aaPredicted RBP12.71□□□□□ -0.37
RTN3-206ENST00000377819 PDE3BQ13370 1112 aa12.71□□□□□ -0.37
RTN3-206ENST00000377819 DNAI2Q9GZS0 605 aa12.71□□□□□ -0.37
RTN3-206ENST00000377819 NUCB2P80303 420 aa12.71□□□□□ -0.37
RTN3-206ENST00000377819 CCDC91Q7Z6B0 441 aa12.71□□□□□ -0.37
RTN3-206ENST00000377819 WASHC4Q2M389 1173 aa12.71□□□□□ -0.38
RTN3-206ENST00000377819 SPATA24Q86W54 205 aa12.71□□□□□ -0.38
RTN3-206ENST00000377819 CLIP1P30622 1438 aa12.71□□□□□ -0.38
RTN3-206ENST00000377819 SIN3AQ96ST3 1273 aa12.71□□□□□ -0.38
RTN3-206ENST00000377819 MTMR7Q9Y216 660 aa12.71□□□□□ -0.38
RTN3-206ENST00000377819 PRXQ9BXM0 1461 aa12.7□□□□□ -0.38
RTN3-206ENST00000377819 WDHD1O75717 1129 aaPredicted RBP12.7□□□□□ -0.38
RTN3-206ENST00000377819 EIF2S2P20042 333 aaKnown RBP12.7□□□□□ -0.38
RTN3-206ENST00000377819 BCCIPQ9P287 314 aaKnown RBP eCLIP12.7□□□□□ -0.38
RTN3-206ENST00000377819 KIF3BO15066 747 aa12.7□□□□□ -0.38
RTN3-206ENST00000377819 ERC2O15083 957 aa12.7□□□□□ -0.38
RTN3-206ENST00000377819 ATP2B1P20020 1258 aa12.69□□□□□ -0.38
RTN3-206ENST00000377819 AEBP2Q6ZN18 517 aaPredicted RBP12.69□□□□□ -0.38
RTN3-206ENST00000377819 TMEM87AQ8NBN3 555 aa12.69□□□□□ -0.38
RTN3-206ENST00000377819 DEF6Q9H4E7 631 aa12.69□□□□□ -0.38
RTN3-206ENST00000377819 SLC3A2P08195 630 aaKnown RBP12.69□□□□□ -0.38
RTN3-206ENST00000377819 FYB1O15117 783 aa12.69□□□□□ -0.38
RTN3-206ENST00000377819 DHX8Q14562 1220 aaKnown RBP12.69□□□□□ -0.38
RTN3-206ENST00000377819 NUTM2FA1L443 756 aa12.68□□□□□ -0.38
RTN3-206ENST00000377819 ANAPC15P60006 121 aa12.68□□□□□ -0.38
RTN3-206ENST00000377819 CCNB3Q8WWL7 1395 aa12.68□□□□□ -0.38
RTN3-206ENST00000377819 KINO60870 393 aaKnown RBP12.68□□□□□ -0.38
RTN3-206ENST00000377819 STIM1Q13586 685 aa12.68□□□□□ -0.38
RTN3-206ENST00000377819 DDX23Q9BUQ8 820 aaKnown RBP12.68□□□□□ -0.38
RTN3-206ENST00000377819 GSE1Q14687 1217 aa12.67□□□□□ -0.38
RTN3-206ENST00000377819 GOLGA6L10A0A0M3HER8 536 aa12.67□□□□□ -0.38
RTN3-206ENST00000377819 ERLIN1O75477 346 aa12.67□□□□□ -0.38
RTN3-206ENST00000377819 BRPF1P55201 1214 aaPredicted RBP12.67□□□□□ -0.38
RTN3-206ENST00000377819 CEP63Q96MT8 703 aa12.67□□□□□ -0.38
RTN3-206ENST00000377819 NEUROD6Q96NK8 337 aa12.67□□□□□ -0.38
RTN3-206ENST00000377819 CENPHQ9H3R5 247 aa12.67□□□□□ -0.38
RTN3-206ENST00000377819 TBC1D2BQ9UPU7 963 aa12.67□□□□□ -0.38
RTN3-206ENST00000377819 WRNQ14191 1432 aaPredicted RBP eCLIP12.67□□□□□ -0.38
RTN3-206ENST00000377819 ZKSCAN2Q63HK3 967 aa12.67□□□□□ -0.38
RTN3-206ENST00000377819 TRIM5Q9C035 493 aa12.67□□□□□ -0.38
RTN3-206ENST00000377819 BMP2KQ9NSY1 1161 aaPredicted RBP12.66□□□□□ -0.38
RTN3-206ENST00000377819 MPHOSPH10O00566 681 aaKnown RBP12.66□□□□□ -0.38
RTN3-206ENST00000377819 EPB41L2O43491 1005 aaKnown RBP12.66□□□□□ -0.38
RTN3-206ENST00000377819 EIF3JO75822 258 aaKnown RBP12.66□□□□□ -0.38
RTN3-206ENST00000377819 POTEJP0CG39 1038 aa12.66□□□□□ -0.38
RTN3-206ENST00000377819 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.66□□□□□ -0.38
RTN3-206ENST00000377819 ZHX3Q9H4I2 956 aa12.66□□□□□ -0.38
RTN3-206ENST00000377819 JMYQ8N9B5 988 aa12.65□□□□□ -0.38
RTN3-206ENST00000377819 API5Q9BZZ5 524 aaKnown RBP12.65□□□□□ -0.38
RTN3-206ENST00000377819 FMNL2Q96PY5 1086 aa12.65□□□□□ -0.38
RTN3-206ENST00000377819 WDR62O43379 1518 aa12.65□□□□□ -0.38
RTN3-206ENST00000377819 RUSC2Q8N2Y8 1516 aa12.65□□□□□ -0.38
RTN3-206ENST00000377819 CADPSQ9ULU8 1353 aa12.65□□□□□ -0.38
RTN3-206ENST00000377819 FOXD1Q16676 465 aa12.65□□□□□ -0.38
RTN3-206ENST00000377819 COMMD10Q9Y6G5 202 aa12.65□□□□□ -0.38
RTN3-206ENST00000377819 GIMAP7Q8NHV1 300 aa12.64□□□□□ -0.39
RTN3-206ENST00000377819 NLRP13Q86W25 1043 aa12.64□□□□□ -0.39
RTN3-206ENST00000377819 SLC26A8Q96RN1 970 aa12.64□□□□□ -0.39
RTN3-206ENST00000377819 PDCP20941 246 aa12.64□□□□□ -0.39
RTN3-206ENST00000377819 FAM161AQ3B820 660 aa12.64□□□□□ -0.39
RTN3-206ENST00000377819 COG3Q96JB2 828 aa12.64□□□□□ -0.39
RTN3-206ENST00000377819 CCDC175P0C221 793 aa12.64□□□□□ -0.39
RTN3-206ENST00000377819 FOSBP53539 338 aa12.64□□□□□ -0.39
RTN3-206ENST00000377819 SF3B2Q13435 895 aaKnown RBP12.64□□□□□ -0.39
RTN3-206ENST00000377819 CFAP57Q96MR6 1250 aa12.64□□□□□ -0.39
RTN3-206ENST00000377819 SMC2O95347 1197 aa12.63□□□□□ -0.39
RTN3-206ENST00000377819 PSMA5P28066 241 aa12.63□□□□□ -0.39
RTN3-206ENST00000377819 PPFIBP1Q86W92 1011 aa12.63□□□□□ -0.39
RTN3-206ENST00000377819 TANGO6Q9C0B7 1094 aa12.63□□□□□ -0.39
RTN3-206ENST00000377819 ABCA10Q8WWZ4 1543 aa12.63□□□□□ -0.39
RTN3-206ENST00000377819 PABPN1LA6NDY0 278 aaKnown RBP12.63□□□□□ -0.39
RTN3-206ENST00000377819 FKBP5Q13451 457 aaPredicted RBP12.63□□□□□ -0.39
RTN3-206ENST00000377819 WDR70Q9NW82 654 aa12.62□□□□□ -0.39
RTN3-206ENST00000377819 IQCEQ6IPM2 695 aa12.62□□□□□ -0.39
RTN3-206ENST00000377819 CENPQQ7L2Z9 268 aaPredicted RBP12.62□□□□□ -0.39
RTN3-206ENST00000377819 PPP1R1BQ9UD71 204 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms