RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 CNGB1Q14028 1251 aaPredicted RBP12.85□□□□□ -0.35
TRIM39-202ENST00000376659 KDM2BQ8NHM5 1336 aa12.85□□□□□ -0.35
TRIM39-202ENST00000376659 NSD3Q9BZ95 1437 aa12.84□□□□□ -0.35
TRIM39-202ENST00000376659 UBR1Q8IWV7 1749 aa12.84□□□□□ -0.35
TRIM39-202ENST00000376659 CDCA8Q53HL2 280 aa12.84□□□□□ -0.35
TRIM39-202ENST00000376659 PHF23Q9BUL5 403 aaPredicted RBP12.84□□□□□ -0.35
TRIM39-202ENST00000376659 EXOC6Q8TAG9 804 aa12.84□□□□□ -0.35
TRIM39-202ENST00000376659 PUS7Q96PZ0 661 aaKnown RBP12.84□□□□□ -0.35
TRIM39-202ENST00000376659 C3P01024 1663 aa12.83□□□□□ -0.36
TRIM39-202ENST00000376659 NKTRP30414 1462 aaKnown RBP12.82□□□□□ -0.36
TRIM39-202ENST00000376659 CENPJQ9HC77 1338 aaPredicted RBP12.82□□□□□ -0.36
TRIM39-202ENST00000376659 RAPGEF3O95398 923 aa12.82□□□□□ -0.36
TRIM39-202ENST00000376659 SPINK5Q9NQ38 1064 aaPredicted RBP12.82□□□□□ -0.36
TRIM39-202ENST00000376659 NALCNQ8IZF0 1738 aa12.81□□□□□ -0.36
TRIM39-202ENST00000376659 CPS1P31327 1500 aa12.81□□□□□ -0.36
TRIM39-202ENST00000376659 ANKRD36BQ8N2N9 1353 aa12.81□□□□□ -0.36
TRIM39-202ENST00000376659 A2ML1A8K2U0 1454 aa12.81□□□□□ -0.36
TRIM39-202ENST00000376659 KNSTRNQ9Y448 316 aa12.8□□□□□ -0.36
TRIM39-202ENST00000376659 SLFN5Q08AF3 891 aa12.8□□□□□ -0.36
TRIM39-202ENST00000376659 DMRT2Q9Y5R5 561 aa12.8□□□□□ -0.36
TRIM39-202ENST00000376659 ABCC11Q96J66 1382 aa12.8□□□□□ -0.36
TRIM39-202ENST00000376659 RIMS1Q86UR5 1692 aaKnown RBP12.79□□□□□ -0.36
TRIM39-202ENST00000376659 SLC24A1O60721 1099 aa12.78□□□□□ -0.36
TRIM39-202ENST00000376659 C20orf194Q5TEA3 1177 aa12.78□□□□□ -0.36
TRIM39-202ENST00000376659 NSD2O96028 1365 aa12.78□□□□□ -0.36
TRIM39-202ENST00000376659 ITSN1Q15811 1721 aa12.77□□□□□ -0.36
TRIM39-202ENST00000376659 DLG5Q8TDM6 1919 aa12.77□□□□□ -0.36
TRIM39-202ENST00000376659 YTHDC2Q9H6S0 1430 aaKnown RBP12.76□□□□□ -0.37
TRIM39-202ENST00000376659 NINLQ9Y2I6 1382 aa12.76□□□□□ -0.37
TRIM39-202ENST00000376659 MAP2P11137 1827 aaKnown RBP12.76□□□□□ -0.37
TRIM39-202ENST00000376659 MARF1Q9Y4F3 1742 aaKnown RBP12.76□□□□□ -0.37
TRIM39-202ENST00000376659 RGPD1P0DJD0 1748 aa12.76□□□□□ -0.37
TRIM39-202ENST00000376659 A0A1W2PP64 1363 aa12.75□□□□□ -0.37
TRIM39-202ENST00000376659 PLIN1O60240 522 aa12.74□□□□□ -0.37
TRIM39-202ENST00000376659 IDI1Q13907 227 aa12.74□□□□□ -0.37
TRIM39-202ENST00000376659 CCDC136Q96JN2 1154 aa12.74□□□□□ -0.37
TRIM39-202ENST00000376659 USP54Q70EL1 1684 aa12.74□□□□□ -0.37
TRIM39-202ENST00000376659 CRBNQ96SW2 442 aa12.74□□□□□ -0.37
TRIM39-202ENST00000376659 NCBP3Q53F19 620 aaKnown RBP12.73□□□□□ -0.37
TRIM39-202ENST00000376659 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.73□□□□□ -0.37
TRIM39-202ENST00000376659 LRRC7Q96NW7 1537 aa12.73□□□□□ -0.37
TRIM39-202ENST00000376659 TMEM132EQ6IEE7 984 aa12.72□□□□□ -0.37
TRIM39-202ENST00000376659 TECPR2O15040 1411 aa12.72□□□□□ -0.37
TRIM39-202ENST00000376659 PNPLA6Q8IY17 1366 aa12.72□□□□□ -0.37
TRIM39-202ENST00000376659 ATP7BP35670 1465 aa12.72□□□□□ -0.37
TRIM39-202ENST00000376659 GGT6Q6P531 493 aa12.71□□□□□ -0.37
TRIM39-202ENST00000376659 SLC12A5Q9H2X9 1139 aa12.71□□□□□ -0.38
TRIM39-202ENST00000376659 FMN2Q9NZ56 1722 aa12.7□□□□□ -0.38
TRIM39-202ENST00000376659 NPM1P06748 294 aaKnown RBP eCLIP12.7□□□□□ -0.38
TRIM39-202ENST00000376659 TRAK1Q9UPV9 953 aa12.7□□□□□ -0.38
TRIM39-202ENST00000376659 SALL2Q9Y467 1007 aaPredicted RBP12.7□□□□□ -0.38
TRIM39-202ENST00000376659 SLC52A1Q9NWF4 448 aa12.7□□□□□ -0.38
TRIM39-202ENST00000376659 GOLGA2Q08379 1002 aa12.7□□□□□ -0.38
TRIM39-202ENST00000376659 MS4A1P11836 297 aa12.69□□□□□ -0.38
TRIM39-202ENST00000376659 NGEFQ8N5V2 710 aa12.69□□□□□ -0.38
TRIM39-202ENST00000376659 CPSF1Q10570 1443 aaKnown RBP12.69□□□□□ -0.38
TRIM39-202ENST00000376659 PEAK1Q9H792 1746 aa12.69□□□□□ -0.38
TRIM39-202ENST00000376659 CCDC27Q2M243 656 aa12.68□□□□□ -0.38
TRIM39-202ENST00000376659 CCDC146Q8IYE0 955 aa12.68□□□□□ -0.38
TRIM39-202ENST00000376659 BACH2Q9BYV9 841 aa12.68□□□□□ -0.38
TRIM39-202ENST00000376659 PAK3O75914 559 aaPredicted RBP12.67□□□□□ -0.38
TRIM39-202ENST00000376659 PLEKHF1Q96S99 279 aa12.67□□□□□ -0.38
TRIM39-202ENST00000376659 WDR43Q15061 677 aaKnown RBP eCLIP12.67□□□□□ -0.38
TRIM39-202ENST00000376659 WWC1Q8IX03 1113 aa12.67□□□□□ -0.38
TRIM39-202ENST00000376659 APAF1O14727 1248 aa12.67□□□□□ -0.38
TRIM39-202ENST00000376659 TCERG1O14776 1098 aaKnown RBP12.67□□□□□ -0.38
TRIM39-202ENST00000376659 VGFO15240 615 aaPredicted RBP12.67□□□□□ -0.38
TRIM39-202ENST00000376659 SKAP1Q86WV1 359 aa12.66□□□□□ -0.38
TRIM39-202ENST00000376659 EVC2Q86UK5 1308 aa12.65□□□□□ -0.38
TRIM39-202ENST00000376659 XRN1Q8IZH2 1706 aaKnown RBP12.65□□□□□ -0.39
TRIM39-202ENST00000376659 E9PSI1 815 aa12.65□□□□□ -0.39
TRIM39-202ENST00000376659 RIMS2Q9UQ26 1411 aa12.64□□□□□ -0.39
TRIM39-202ENST00000376659 PPP6R1Q9UPN7 881 aa12.64□□□□□ -0.39
TRIM39-202ENST00000376659 FAM135BQ49AJ0 1406 aa12.64□□□□□ -0.39
TRIM39-202ENST00000376659 ATAD2Q6PL18 1390 aa12.63□□□□□ -0.39
TRIM39-202ENST00000376659 CGNL1Q0VF96 1302 aa12.63□□□□□ -0.39
TRIM39-202ENST00000376659 FBXO31Q5XUX0 539 aaPredicted RBP12.63□□□□□ -0.39
TRIM39-202ENST00000376659 N4BP2Q86UW6 1770 aaPredicted RBP12.62□□□□□ -0.39
TRIM39-202ENST00000376659 PPIP5K1Q6PFW1 1433 aa12.62□□□□□ -0.39
TRIM39-202ENST00000376659 RGPD8O14715 1765 aaPredicted RBP12.62□□□□□ -0.39
TRIM39-202ENST00000376659 BCAR3O75815 825 aa12.62□□□□□ -0.39
TRIM39-202ENST00000376659 IPO9Q96P70 1041 aaKnown RBP12.62□□□□□ -0.39
TRIM39-202ENST00000376659 PDE4AP27815 886 aa12.61□□□□□ -0.39
TRIM39-202ENST00000376659 LRRC37A3O60309 1634 aa12.61□□□□□ -0.39
TRIM39-202ENST00000376659 CDK12Q9NYV4 1490 aaPredicted RBP12.61□□□□□ -0.39
TRIM39-202ENST00000376659 C8orf34Q49A92 452 aa12.61□□□□□ -0.39
TRIM39-202ENST00000376659 ANO8Q9HCE9 1232 aaPredicted RBP12.61□□□□□ -0.39
TRIM39-202ENST00000376659 MYT1LQ9UL68 1186 aa12.61□□□□□ -0.39
TRIM39-202ENST00000376659 NUTM2DQ5VT03 806 aaPredicted RBP12.61□□□□□ -0.39
TRIM39-202ENST00000376659 RUNDC1Q96C34 613 aa12.61□□□□□ -0.39
TRIM39-202ENST00000376659 CABP2Q9NPB3 220 aa12.61□□□□□ -0.39
TRIM39-202ENST00000376659 SLIT1O75093 1534 aa12.6□□□□□ -0.39
TRIM39-202ENST00000376659 FER1L4A9Z1Z3 1794 aa12.6□□□□□ -0.39
TRIM39-202ENST00000376659 ADAMTS13Q76LX8 1427 aa12.6□□□□□ -0.39
TRIM39-202ENST00000376659 CENPQQ7L2Z9 268 aaPredicted RBP12.59□□□□□ -0.39
TRIM39-202ENST00000376659 NOP58Q9Y2X3 529 aaKnown RBP12.59□□□□□ -0.39
TRIM39-202ENST00000376659 MTHFSP49914 203 aa12.59□□□□□ -0.39
TRIM39-202ENST00000376659 WDR63Q8IWG1 891 aa12.59□□□□□ -0.39
TRIM39-202ENST00000376659 ZMYM3Q14202 1370 aa12.59□□□□□ -0.39
TRIM39-202ENST00000376659 METP08581 1390 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms