RNA–Protein interactions for RNA: ENST00000376656.8

TRIM39-201, Transcript of tripartite motif containing 39, humanhuman

APPRIS P4 TSL 2 BASIC

Gene TRIM39, Length 3,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-201ENST00000376656 PHF23Q9BUL5 403 aaPredicted RBP20.96■□□□□ 0.95
TRIM39-201ENST00000376656 RTEL1-TNFRSF6BF6WH68 1400 aa20.96■□□□□ 0.95
TRIM39-201ENST00000376656 MFAP1P55081 439 aaKnown RBP20.95■□□□□ 0.94
TRIM39-201ENST00000376656 C22orf23Q9BZE7 217 aa20.95■□□□□ 0.94
TRIM39-201ENST00000376656 TRAK2O60296 914 aa20.95■□□□□ 0.94
TRIM39-201ENST00000376656 CHMP5Q9NZZ3 219 aa20.95■□□□□ 0.94
TRIM39-201ENST00000376656 MORC1Q86VD1 984 aa20.94■□□□□ 0.94
TRIM39-201ENST00000376656 WDR63Q8IWG1 891 aa20.94■□□□□ 0.94
TRIM39-201ENST00000376656 SLC24A1O60721 1099 aa20.93■□□□□ 0.94
TRIM39-201ENST00000376656 NAP1L5Q96NT1 182 aaPredicted RBP20.93■□□□□ 0.94
TRIM39-201ENST00000376656 ADGRF5Q8IZF2 1346 aa20.93■□□□□ 0.94
TRIM39-201ENST00000376656 MVPQ14764 893 aaKnown RBP20.93■□□□□ 0.94
TRIM39-201ENST00000376656 ABCA6Q8N139 1617 aa20.93■□□□□ 0.94
TRIM39-201ENST00000376656 PNNQ9H307 717 aaKnown RBP20.93■□□□□ 0.94
TRIM39-201ENST00000376656 NSD3Q9BZ95 1437 aa20.92■□□□□ 0.94
TRIM39-201ENST00000376656 CLCN1P35523 988 aa20.92■□□□□ 0.94
TRIM39-201ENST00000376656 PLCH2O75038 1416 aa20.91■□□□□ 0.94
TRIM39-201ENST00000376656 EFCAB2Q5VUJ9 269 aa20.91■□□□□ 0.94
TRIM39-201ENST00000376656 ABCC1P33527 1531 aa20.91■□□□□ 0.94
TRIM39-201ENST00000376656 MAP3K4Q9Y6R4 1608 aa20.9■□□□□ 0.94
TRIM39-201ENST00000376656 SPAG9O60271 1321 aaKnown RBP20.89■□□□□ 0.93
TRIM39-201ENST00000376656 UGGT1Q9NYU2 1555 aa20.88■□□□□ 0.93
TRIM39-201ENST00000376656 MRE11P49959 708 aa20.88■□□□□ 0.93
TRIM39-201ENST00000376656 FTSJ3Q8IY81 847 aaKnown RBP20.88■□□□□ 0.93
TRIM39-201ENST00000376656 AFAP1Q8N556 730 aa20.88■□□□□ 0.93
TRIM39-201ENST00000376656 SHROOM2Q13796 1616 aa20.87■□□□□ 0.93
TRIM39-201ENST00000376656 TET3O43151 1660 aa20.87■□□□□ 0.93
TRIM39-201ENST00000376656 ZKSCAN2Q63HK3 967 aa20.87■□□□□ 0.93
TRIM39-201ENST00000376656 DZIP1LQ8IYY4 767 aaKnown RBP20.87■□□□□ 0.93
TRIM39-201ENST00000376656 ZNF692Q9BU19 519 aaPredicted RBP20.87■□□□□ 0.93
TRIM39-201ENST00000376656 MTHFSP49914 203 aa20.87■□□□□ 0.93
TRIM39-201ENST00000376656 SLC12A5Q9H2X9 1139 aa20.87■□□□□ 0.93
TRIM39-201ENST00000376656 CCDC27Q2M243 656 aa20.86■□□□□ 0.93
TRIM39-201ENST00000376656 MYH16Q9H6N6 1097 aa20.86■□□□□ 0.93
TRIM39-201ENST00000376656 KANK1Q14678 1352 aa20.85■□□□□ 0.93
TRIM39-201ENST00000376656 HSCBQ8IWL3 235 aa20.85■□□□□ 0.93
TRIM39-201ENST00000376656 GRPEL1Q9HAV7 217 aa20.85■□□□□ 0.93
TRIM39-201ENST00000376656 MYOM2P54296 1465 aa20.85■□□□□ 0.93
TRIM39-201ENST00000376656 DEPDC5O75140 1603 aa20.84■□□□□ 0.93
TRIM39-201ENST00000376656 ZNF518AQ6AHZ1 1483 aa20.83■□□□□ 0.93
TRIM39-201ENST00000376656 TSR2Q969E8 191 aaKnown RBP20.83■□□□□ 0.93
TRIM39-201ENST00000376656 MYO3AQ8NEV4 1616 aa20.83■□□□□ 0.92
TRIM39-201ENST00000376656 ZFYVE16Q7Z3T8 1539 aa20.83■□□□□ 0.92
TRIM39-201ENST00000376656 SBNO2Q9Y2G9 1366 aa20.82■□□□□ 0.92
TRIM39-201ENST00000376656 DDX11L8A8MPP1 907 aa20.82■□□□□ 0.92
TRIM39-201ENST00000376656 HDAC1Q13547 482 aaPredicted RBP20.81■□□□□ 0.92
TRIM39-201ENST00000376656 SMC4Q9NTJ3 1288 aa20.81■□□□□ 0.92
TRIM39-201ENST00000376656 ERBB4Q15303 1308 aa20.8■□□□□ 0.92
TRIM39-201ENST00000376656 TRIM27P14373 513 aa20.8■□□□□ 0.92
TRIM39-201ENST00000376656 DDIT3P35638 169 aa20.8■□□□□ 0.92
TRIM39-201ENST00000376656 CFAP53Q96M91 514 aa20.8■□□□□ 0.92
TRIM39-201ENST00000376656 TRAK1Q9UPV9 953 aa20.8■□□□□ 0.92
TRIM39-201ENST00000376656 U2AF1L5P0DN76 240 aaPredicted RBP20.8■□□□□ 0.92
TRIM39-201ENST00000376656 U2AF1Q01081 240 aaKnown RBP eCLIP20.8■□□□□ 0.92
TRIM39-201ENST00000376656 ITPRIPQ8IWB1 547 aa20.8■□□□□ 0.92
TRIM39-201ENST00000376656 NCOA3Q9Y6Q9 1424 aa20.8■□□□□ 0.92
TRIM39-201ENST00000376656 ERCC6L2Q5T890 1561 aa20.79■□□□□ 0.92
TRIM39-201ENST00000376656 NEURL4Q96JN8 1562 aa20.79■□□□□ 0.92
TRIM39-201ENST00000376656 KIF3BO15066 747 aa20.78■□□□□ 0.92
TRIM39-201ENST00000376656 EXOSC9Q06265 439 aaKnown RBP20.78■□□□□ 0.92
TRIM39-201ENST00000376656 HSP90AA1P07900 732 aaKnown RBP20.78■□□□□ 0.92
TRIM39-201ENST00000376656 VWDEQ8N2E2 1590 aa20.78■□□□□ 0.92
TRIM39-201ENST00000376656 ESPNB1AK53 854 aa20.78■□□□□ 0.92
TRIM39-201ENST00000376656 IFT172Q9UG01 1749 aa20.77■□□□□ 0.92
TRIM39-201ENST00000376656 SMC5Q8IY18 1101 aa20.77■□□□□ 0.92
TRIM39-201ENST00000376656 SSH1Q8WYL5 1049 aa20.77■□□□□ 0.92
TRIM39-201ENST00000376656 TNPO1Q92973 898 aaKnown RBP20.77■□□□□ 0.92
TRIM39-201ENST00000376656 KIF1BO60333 1816 aa20.77■□□□□ 0.92
TRIM39-201ENST00000376656 MROH2AA6NES4 1674 aa20.76■□□□□ 0.91
TRIM39-201ENST00000376656 GAS2L3Q86XJ1 694 aa20.76■□□□□ 0.91
TRIM39-201ENST00000376656 DDX19BQ9UMR2 479 aa20.76■□□□□ 0.91
TRIM39-201ENST00000376656 HSP90AA2PQ14568 343 aaPredicted RBP20.75■□□□□ 0.91
TRIM39-201ENST00000376656 RBM25P49756 843 aaKnown RBP20.75■□□□□ 0.91
TRIM39-201ENST00000376656 ATF7IPQ6VMQ6 1270 aa20.74■□□□□ 0.91
TRIM39-201ENST00000376656 NRXN1Q9ULB1 1477 aa20.74■□□□□ 0.91
TRIM39-201ENST00000376656 GLIPR1L2Q4G1C9 344 aa20.74■□□□□ 0.91
TRIM39-201ENST00000376656 ISY1Q9ULR0 285 aaKnown RBP20.74■□□□□ 0.91
TRIM39-201ENST00000376656 ADGRB2O60241 1585 aa20.74■□□□□ 0.91
TRIM39-201ENST00000376656 SNX21Q969T3 373 aa20.73■□□□□ 0.91
TRIM39-201ENST00000376656 NOB1Q9ULX3 412 aaKnown RBP20.73■□□□□ 0.91
TRIM39-201ENST00000376656 NOS1P29475 1434 aa20.73■□□□□ 0.91
TRIM39-201ENST00000376656 CT47B1P0C2W7 299 aaPredicted RBP20.73■□□□□ 0.91
TRIM39-201ENST00000376656 ZCCHC11Q5TAX3 1644 aaKnown RBP20.73■□□□□ 0.91
TRIM39-201ENST00000376656 TMEM57Q8N5G2 664 aa20.73■□□□□ 0.91
TRIM39-201ENST00000376656 QRICH2Q9H0J4 1663 aa20.73■□□□□ 0.91
TRIM39-201ENST00000376656 NCBP3Q53F19 620 aaKnown RBP20.72■□□□□ 0.91
TRIM39-201ENST00000376656 ZC3H13Q5T200 1668 aaKnown RBP20.72■□□□□ 0.91
TRIM39-201ENST00000376656 CHD1O14646 1710 aa20.72■□□□□ 0.91
TRIM39-201ENST00000376656 USP32Q8NFA0 1604 aa20.71■□□□□ 0.91
TRIM39-201ENST00000376656 RRP9O43818 475 aaKnown RBP20.71■□□□□ 0.91
TRIM39-201ENST00000376656 HSP90AB1P08238 724 aaKnown RBP20.71■□□□□ 0.91
TRIM39-201ENST00000376656 LNPKQ9C0E8 428 aa20.71■□□□□ 0.91
TRIM39-201ENST00000376656 ZBTB40Q9NUA8 1239 aa20.71■□□□□ 0.91
TRIM39-201ENST00000376656 CHGAP10645 457 aaKnown RBP20.7■□□□□ 0.9
TRIM39-201ENST00000376656 TMEM132EQ6IEE7 984 aa20.7■□□□□ 0.9
TRIM39-201ENST00000376656 TRIM44Q96DX7 344 aaPredicted RBP20.7■□□□□ 0.9
TRIM39-201ENST00000376656 CD109Q6YHK3 1445 aa20.7■□□□□ 0.9
TRIM39-201ENST00000376656 RAB3GAP1Q15042 981 aa20.7■□□□□ 0.9
TRIM39-201ENST00000376656 ATP7AQ04656 1500 aa20.69■□□□□ 0.9
TRIM39-201ENST00000376656 ADGRL1O94910 1474 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms