RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 R3HCC1Q9Y3T6 440 aaKnown RBP16.58■□□□□ 0.24
COL4A1-201ENST00000375820 RALYLQ86SE5 291 aaKnown RBP16.58■□□□□ 0.24
COL4A1-201ENST00000375820 BAZ1AQ9NRL2 1556 aaPredicted RBP16.58■□□□□ 0.24
COL4A1-201ENST00000375820 BRPF1P55201 1214 aaPredicted RBP16.57■□□□□ 0.24
COL4A1-201ENST00000375820 CAGE1Q8TC20 777 aa16.57■□□□□ 0.24
COL4A1-201ENST00000375820 GGNBP2Q9H3C7 697 aa16.57■□□□□ 0.24
COL4A1-201ENST00000375820 SAFBQ15424 915 aaKnown RBP eCLIP16.57■□□□□ 0.24
COL4A1-201ENST00000375820 CHMP5Q9NZZ3 219 aa16.57■□□□□ 0.24
COL4A1-201ENST00000375820 CHMP4CQ96CF2 233 aa16.57■□□□□ 0.24
COL4A1-201ENST00000375820 FMNL2Q96PY5 1086 aa16.57■□□□□ 0.24
COL4A1-201ENST00000375820 C1orf115Q9H7X2 142 aa16.56■□□□□ 0.24
COL4A1-201ENST00000375820 C22orf23Q9BZE7 217 aa16.56■□□□□ 0.24
COL4A1-201ENST00000375820 VGFO15240 615 aaPredicted RBP16.56■□□□□ 0.24
COL4A1-201ENST00000375820 CYB5RLQ6IPT4 315 aa16.55■□□□□ 0.24
COL4A1-201ENST00000375820 NLRP2Q9NX02 1062 aa16.55■□□□□ 0.24
COL4A1-201ENST00000375820 TMEM132AQ24JP5 1023 aa16.55■□□□□ 0.24
COL4A1-201ENST00000375820 MPNDQ8N594 471 aa16.55■□□□□ 0.24
COL4A1-201ENST00000375820 CABP2Q9NPB3 220 aa16.55■□□□□ 0.24
COL4A1-201ENST00000375820 API5Q9BZZ5 524 aaKnown RBP16.55■□□□□ 0.24
COL4A1-201ENST00000375820 OFD1O75665 1012 aa16.55■□□□□ 0.24
COL4A1-201ENST00000375820 AK7Q96M32 723 aa16.54■□□□□ 0.24
COL4A1-201ENST00000375820 PPP1R1BQ9UD71 204 aaPredicted RBP16.54■□□□□ 0.24
COL4A1-201ENST00000375820 CCDC18Q5T9S5 1454 aa16.54■□□□□ 0.24
COL4A1-201ENST00000375820 ZBED9Q6R2W3 1325 aa16.54■□□□□ 0.24
COL4A1-201ENST00000375820 FAM43AQ8N2R8 423 aa16.53■□□□□ 0.24
COL4A1-201ENST00000375820 OLFM4Q6UX06 510 aa16.53■□□□□ 0.24
COL4A1-201ENST00000375820 FSD1Q9BTV5 496 aa16.53■□□□□ 0.24
COL4A1-201ENST00000375820 SMC2O95347 1197 aa16.53■□□□□ 0.24
COL4A1-201ENST00000375820 MAP4K4O95819 1239 aaPredicted RBP16.52■□□□□ 0.24
COL4A1-201ENST00000375820 SDF4Q9BRK5 362 aa16.52■□□□□ 0.24
COL4A1-201ENST00000375820 RAPGEF4Q8WZA2 1011 aa16.52■□□□□ 0.24
COL4A1-201ENST00000375820 ERC2O15083 957 aa16.52■□□□□ 0.23
COL4A1-201ENST00000375820 UBTFL1P0CB47 393 aaPredicted RBP16.51■□□□□ 0.23
COL4A1-201ENST00000375820 RUNDC1Q96C34 613 aa16.51■□□□□ 0.23
COL4A1-201ENST00000375820 SPC24Q8NBT2 197 aa16.51■□□□□ 0.23
COL4A1-201ENST00000375820 CAVIN1Q6NZI2 390 aaKnown RBP16.51■□□□□ 0.23
COL4A1-201ENST00000375820 TMEM132EQ6IEE7 984 aa16.5■□□□□ 0.23
COL4A1-201ENST00000375820 ATP2B2Q01814 1243 aa16.5■□□□□ 0.23
COL4A1-201ENST00000375820 NACADO15069 1562 aa16.5■□□□□ 0.23
COL4A1-201ENST00000375820 JPH4Q96JJ6 628 aa16.5■□□□□ 0.23
COL4A1-201ENST00000375820 STK3Q13188 491 aa16.5■□□□□ 0.23
COL4A1-201ENST00000375820 MAP7D2Q96T17 732 aa16.5■□□□□ 0.23
COL4A1-201ENST00000375820 PAF1Q8N7H5 531 aa16.49■□□□□ 0.23
COL4A1-201ENST00000375820 RBM42Q9BTD8 480 aaKnown RBP16.49■□□□□ 0.23
COL4A1-201ENST00000375820 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.49■□□□□ 0.23
COL4A1-201ENST00000375820 BRMS1Q9HCU9 246 aa16.49■□□□□ 0.23
COL4A1-201ENST00000375820 ROCK1Q13464 1354 aa16.48■□□□□ 0.23
COL4A1-201ENST00000375820 CALRP27797 417 aaKnown RBP16.48■□□□□ 0.23
COL4A1-201ENST00000375820 NFKBIBQ15653 356 aa16.48■□□□□ 0.23
COL4A1-201ENST00000375820 PLCD4Q9BRC7 762 aa16.48■□□□□ 0.23
COL4A1-201ENST00000375820 NASPP49321 788 aaPredicted RBP16.48■□□□□ 0.23
COL4A1-201ENST00000375820 TRIM5Q9C035 493 aa16.48■□□□□ 0.23
COL4A1-201ENST00000375820 NUCB2P80303 420 aa16.48■□□□□ 0.23
COL4A1-201ENST00000375820 UACAQ9BZF9 1416 aa16.47■□□□□ 0.23
COL4A1-201ENST00000375820 HSP90B2PQ58FF3 399 aa16.47■□□□□ 0.23
COL4A1-201ENST00000375820 RBM10P98175 930 aaKnown RBP16.47■□□□□ 0.23
COL4A1-201ENST00000375820 ARGLU1Q9NWB6 273 aaPredicted RBP16.47■□□□□ 0.23
COL4A1-201ENST00000375820 DHX57Q6P158 1386 aaKnown RBP16.46■□□□□ 0.23
COL4A1-201ENST00000375820 SURF6O75683 361 aaKnown RBP16.46■□□□□ 0.23
COL4A1-201ENST00000375820 PRPF40AO75400 957 aaKnown RBP16.46■□□□□ 0.23
COL4A1-201ENST00000375820 CDC45O75419 566 aa16.46■□□□□ 0.23
COL4A1-201ENST00000375820 GNAI1P63096 354 aa16.46■□□□□ 0.23
COL4A1-201ENST00000375820 ATF3P18847 181 aa16.45■□□□□ 0.22
COL4A1-201ENST00000375820 CNTROBQ8N137 903 aa16.45■□□□□ 0.22
COL4A1-201ENST00000375820 SIL1Q9H173 461 aa16.45■□□□□ 0.22
COL4A1-201ENST00000375820 STRN4Q9NRL3 753 aa16.45■□□□□ 0.22
COL4A1-201ENST00000375820 FIBPO43427 364 aa16.45■□□□□ 0.22
COL4A1-201ENST00000375820 CDK5RAP3Q96JB5 506 aa16.45■□□□□ 0.22
COL4A1-201ENST00000375820 PDS5BQ9NTI5 1447 aa16.44■□□□□ 0.22
COL4A1-201ENST00000375820 IBSPP21815 317 aaPredicted RBP16.44■□□□□ 0.22
COL4A1-201ENST00000375820 ZHX3Q9H4I2 956 aa16.44■□□□□ 0.22
COL4A1-201ENST00000375820 H0YHG0 523 aa16.44■□□□□ 0.22
COL4A1-201ENST00000375820 CDCA7LQ96GN5 454 aa16.44■□□□□ 0.22
COL4A1-201ENST00000375820 CDR1P51861 262 aa16.44■□□□□ 0.22
COL4A1-201ENST00000375820 NAT10Q9H0A0 1025 aaKnown RBP16.44■□□□□ 0.22
COL4A1-201ENST00000375820 AEBP2Q6ZN18 517 aaPredicted RBP16.44■□□□□ 0.22
COL4A1-201ENST00000375820 KRT18P05783 430 aaKnown RBP16.44■□□□□ 0.22
COL4A1-201ENST00000375820 NINLQ9Y2I6 1382 aa16.43■□□□□ 0.22
COL4A1-201ENST00000375820 RSPH4AQ5TD94 716 aa16.43■□□□□ 0.22
COL4A1-201ENST00000375820 NEK4P51957 841 aa16.43■□□□□ 0.22
COL4A1-201ENST00000375820 RAPGEF2Q9Y4G8 1499 aa16.43■□□□□ 0.22
COL4A1-201ENST00000375820 NLRP6P59044 892 aa16.43■□□□□ 0.22
COL4A1-201ENST00000375820 SPINK5Q9NQ38 1064 aaPredicted RBP16.43■□□□□ 0.22
COL4A1-201ENST00000375820 HSP90AB4PQ58FF6 505 aa16.43■□□□□ 0.22
COL4A1-201ENST00000375820 XBP1P17861 261 aa16.43■□□□□ 0.22
COL4A1-201ENST00000375820 FAM177A1Q8N128 213 aaPredicted RBP16.43■□□□□ 0.22
COL4A1-201ENST00000375820 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.42■□□□□ 0.22
COL4A1-201ENST00000375820 CCDC173Q0VFZ6 552 aa16.42■□□□□ 0.22
COL4A1-201ENST00000375820 ACBD3Q9H3P7 528 aa16.42■□□□□ 0.22
COL4A1-201ENST00000375820 CCDC39Q9UFE4 941 aa16.42■□□□□ 0.22
COL4A1-201ENST00000375820 TTC39AQ5SRH9 613 aa16.41■□□□□ 0.22
COL4A1-201ENST00000375820 MROH2BQ7Z745 1585 aa16.41■□□□□ 0.22
COL4A1-201ENST00000375820 PIBF1Q8WXW3 757 aa16.41■□□□□ 0.22
COL4A1-201ENST00000375820 ADAMTS8Q9UP79 889 aa16.41■□□□□ 0.22
COL4A1-201ENST00000375820 CCAR1Q8IX12 1150 aaKnown RBP16.41■□□□□ 0.22
COL4A1-201ENST00000375820 ANKRD62A6NC57 917 aa16.4■□□□□ 0.22
COL4A1-201ENST00000375820 TRAK2O60296 914 aa16.4■□□□□ 0.22
COL4A1-201ENST00000375820 PSMA5P28066 241 aa16.4■□□□□ 0.22
COL4A1-201ENST00000375820 TBC1D2BQ9UPU7 963 aa16.4■□□□□ 0.22
COL4A1-201ENST00000375820 CNNM1Q9NRU3 951 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms