RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 APAF1O14727 1248 aa18.34■□□□□ 0.53
CLCNKA-202ENST00000375692 FRAT1Q92837 279 aaPredicted RBP18.34■□□□□ 0.53
CLCNKA-202ENST00000375692 ZMYM3Q14202 1370 aa18.33■□□□□ 0.53
CLCNKA-202ENST00000375692 CEBPAP49715 358 aaPredicted RBP18.33■□□□□ 0.52
CLCNKA-202ENST00000375692 MROH2AA6NES4 1674 aa18.33■□□□□ 0.52
CLCNKA-202ENST00000375692 CFAP70Q5T0N1 1121 aa18.33■□□□□ 0.52
CLCNKA-202ENST00000375692 ZC3H13Q5T200 1668 aaKnown RBP18.33■□□□□ 0.52
CLCNKA-202ENST00000375692 SLC52A1Q9NWF4 448 aa18.31■□□□□ 0.52
CLCNKA-202ENST00000375692 KIF1BO60333 1816 aa18.31■□□□□ 0.52
CLCNKA-202ENST00000375692 TRMT2AQ8IZ69 625 aaKnown RBP18.31■□□□□ 0.52
CLCNKA-202ENST00000375692 DMRT2Q9Y5R5 561 aa18.31■□□□□ 0.52
CLCNKA-202ENST00000375692 FRAT2O75474 233 aaPredicted RBP18.3■□□□□ 0.52
CLCNKA-202ENST00000375692 IGHDP01880 384 aa18.29■□□□□ 0.52
CLCNKA-202ENST00000375692 ADGRB3O60242 1522 aa18.29■□□□□ 0.52
CLCNKA-202ENST00000375692 ERVK-7P63135 1459 aa18.29■□□□□ 0.52
CLCNKA-202ENST00000375692 PREX1Q8TCU6 1659 aa18.28■□□□□ 0.52
CLCNKA-202ENST00000375692 CDCA8Q53HL2 280 aa18.27■□□□□ 0.52
CLCNKA-202ENST00000375692 MADDQ8WXG6 1647 aa18.27■□□□□ 0.51
CLCNKA-202ENST00000375692 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.27■□□□□ 0.51
CLCNKA-202ENST00000375692 ASXL1Q8IXJ9 1541 aa18.26■□□□□ 0.51
CLCNKA-202ENST00000375692 STAG3Q9UJ98 1225 aa18.26■□□□□ 0.51
CLCNKA-202ENST00000375692 PIK3C2BO00750 1634 aa18.26■□□□□ 0.51
CLCNKA-202ENST00000375692 PIK3C2GO75747 1445 aa18.25■□□□□ 0.51
CLCNKA-202ENST00000375692 STAC3Q96MF2 364 aa18.25■□□□□ 0.51
CLCNKA-202ENST00000375692 NKTRP30414 1462 aaKnown RBP18.24■□□□□ 0.51
CLCNKA-202ENST00000375692 TMEM132EQ6IEE7 984 aa18.24■□□□□ 0.51
CLCNKA-202ENST00000375692 SCAF11Q99590 1463 aaKnown RBP18.23■□□□□ 0.51
CLCNKA-202ENST00000375692 SEC24BO95487 1268 aa18.23■□□□□ 0.51
CLCNKA-202ENST00000375692 IQGAP1P46940 1657 aa18.23■□□□□ 0.51
CLCNKA-202ENST00000375692 NEURL4Q96JN8 1562 aa18.23■□□□□ 0.51
CLCNKA-202ENST00000375692 EIF3AQ14152 1382 aaKnown RBP18.22■□□□□ 0.51
CLCNKA-202ENST00000375692 E9PSI1 815 aa18.22■□□□□ 0.51
CLCNKA-202ENST00000375692 PANK1Q8TE04 598 aa18.22■□□□□ 0.51
CLCNKA-202ENST00000375692 USP19O94966 1318 aa18.22■□□□□ 0.51
CLCNKA-202ENST00000375692 CARD14Q9BXL6 1004 aa18.21■□□□□ 0.51
CLCNKA-202ENST00000375692 COG6Q9Y2V7 657 aa18.21■□□□□ 0.51
CLCNKA-202ENST00000375692 RPGRIP1LQ68CZ1 1315 aa18.21■□□□□ 0.51
CLCNKA-202ENST00000375692 MYOM2P54296 1465 aa18.2■□□□□ 0.5
CLCNKA-202ENST00000375692 MYO5BQ9ULV0 1848 aa18.2■□□□□ 0.5
CLCNKA-202ENST00000375692 VGFO15240 615 aaPredicted RBP18.2■□□□□ 0.5
CLCNKA-202ENST00000375692 SPATA31D1Q6ZQQ2 1576 aa18.19■□□□□ 0.5
CLCNKA-202ENST00000375692 PRKCSHP14314 528 aaPredicted RBP18.19■□□□□ 0.5
CLCNKA-202ENST00000375692 TMEM131LA2VDJ0 1609 aa18.19■□□□□ 0.5
CLCNKA-202ENST00000375692 IFT172Q9UG01 1749 aa18.19■□□□□ 0.5
CLCNKA-202ENST00000375692 CANXP27824 592 aaKnown RBP18.18■□□□□ 0.5
CLCNKA-202ENST00000375692 C14orf93Q9H972 538 aaKnown RBP18.18■□□□□ 0.5
CLCNKA-202ENST00000375692 NRXN1Q9ULB1 1477 aa18.18■□□□□ 0.5
CLCNKA-202ENST00000375692 NPC1L1Q9UHC9 1359 aa18.18■□□□□ 0.5
CLCNKA-202ENST00000375692 NEUROD2Q15784 382 aa18.18■□□□□ 0.5
CLCNKA-202ENST00000375692 MYOM1P52179 1685 aa18.17■□□□□ 0.5
CLCNKA-202ENST00000375692 NEXMIFQ5QGS0 1516 aa18.17■□□□□ 0.5
CLCNKA-202ENST00000375692 PPLO60437 1756 aa18.17■□□□□ 0.5
CLCNKA-202ENST00000375692 TNRQ92752 1358 aa18.16■□□□□ 0.5
CLCNKA-202ENST00000375692 CENPJQ9HC77 1338 aaPredicted RBP18.16■□□□□ 0.5
CLCNKA-202ENST00000375692 CLUAP1Q96AJ1 413 aa18.16■□□□□ 0.5
CLCNKA-202ENST00000375692 WWC1Q8IX03 1113 aa18.16■□□□□ 0.5
CLCNKA-202ENST00000375692 TRAK1Q9UPV9 953 aa18.16■□□□□ 0.5
CLCNKA-202ENST00000375692 PDE3AQ14432 1141 aa18.15■□□□□ 0.5
CLCNKA-202ENST00000375692 RRP7AQ9Y3A4 280 aaKnown RBP18.15■□□□□ 0.5
CLCNKA-202ENST00000375692 CGNL1Q0VF96 1302 aa18.15■□□□□ 0.5
CLCNKA-202ENST00000375692 A2ML1A8K2U0 1454 aa18.15■□□□□ 0.5
CLCNKA-202ENST00000375692 TNNT2P45379 298 aaPredicted RBP18.14■□□□□ 0.49
CLCNKA-202ENST00000375692 TNNQ9UQP3 1299 aa18.13■□□□□ 0.49
CLCNKA-202ENST00000375692 SLKQ9H2G2 1235 aaPredicted RBP18.13■□□□□ 0.49
CLCNKA-202ENST00000375692 POGKQ9P215 609 aa18.11■□□□□ 0.49
CLCNKA-202ENST00000375692 STK26Q9P289 416 aa18.11■□□□□ 0.49
CLCNKA-202ENST00000375692 BCL2L13Q9BXK5 485 aa18.1■□□□□ 0.49
CLCNKA-202ENST00000375692 PCDHB15Q9Y5E8 787 aa18.1■□□□□ 0.49
CLCNKA-202ENST00000375692 MAPK8IP3Q9UPT6 1336 aa18.1■□□□□ 0.49
CLCNKA-202ENST00000375692 KDM5AP29375 1690 aaKnown RBP18.1■□□□□ 0.49
CLCNKA-202ENST00000375692 RLBP1P12271 317 aa18.09■□□□□ 0.49
CLCNKA-202ENST00000375692 RIMS2Q9UQ26 1411 aa18.09■□□□□ 0.49
CLCNKA-202ENST00000375692 FER1L4A9Z1Z3 1794 aa18.08■□□□□ 0.48
CLCNKA-202ENST00000375692 RARSP54136 660 aaKnown RBP18.08■□□□□ 0.48
CLCNKA-202ENST00000375692 C3P01024 1663 aa18.08■□□□□ 0.48
CLCNKA-202ENST00000375692 SAFB2Q14151 953 aaKnown RBP eCLIP18.07■□□□□ 0.48
CLCNKA-202ENST00000375692 ZFYVE9O95405 1425 aa18.07■□□□□ 0.48
CLCNKA-202ENST00000375692 ADGRB1O14514 1584 aa18.07■□□□□ 0.48
CLCNKA-202ENST00000375692 KIAA1210Q9ULL0 1709 aa18.06■□□□□ 0.48
CLCNKA-202ENST00000375692 BECN1Q14457 450 aa18.06■□□□□ 0.48
CLCNKA-202ENST00000375692 TCP11L2Q8N4U5 519 aa18.06■□□□□ 0.48
CLCNKA-202ENST00000375692 NGEFQ8N5V2 710 aa18.06■□□□□ 0.48
CLCNKA-202ENST00000375692 MORC1Q86VD1 984 aa18.06■□□□□ 0.48
CLCNKA-202ENST00000375692 LTKP29376 864 aa18.05■□□□□ 0.48
CLCNKA-202ENST00000375692 POLR3AO14802 1390 aaPredicted RBP18.05■□□□□ 0.48
CLCNKA-202ENST00000375692 PDZRN3Q9UPQ7 1066 aa18.05■□□□□ 0.48
CLCNKA-202ENST00000375692 NLRP1Q9C000 1473 aa18.04■□□□□ 0.48
CLCNKA-202ENST00000375692 SLC12A5Q9H2X9 1139 aa18.04■□□□□ 0.48
CLCNKA-202ENST00000375692 VIRMAQ69YN4 1812 aaKnown RBP18.04■□□□□ 0.48
CLCNKA-202ENST00000375692 RUNDC1Q96C34 613 aa18.03■□□□□ 0.48
CLCNKA-202ENST00000375692 NINLQ9Y2I6 1382 aa18.03■□□□□ 0.48
CLCNKA-202ENST00000375692 PMFBP1Q8TBY8 1022 aa18.02■□□□□ 0.48
CLCNKA-202ENST00000375692 TMEM2Q9UHN6 1383 aa18.02■□□□□ 0.48
CLCNKA-202ENST00000375692 ANTXR1Q9H6X2 564 aa18.02■□□□□ 0.47
CLCNKA-202ENST00000375692 SPRYD3Q8NCJ5 442 aa18.01■□□□□ 0.47
CLCNKA-202ENST00000375692 NSD3Q9BZ95 1437 aa18.01■□□□□ 0.47
CLCNKA-202ENST00000375692 SETBP1Q9Y6X0 1596 aa18.01■□□□□ 0.47
CLCNKA-202ENST00000375692 RIMS1Q86UR5 1692 aaKnown RBP18■□□□□ 0.47
CLCNKA-202ENST00000375692 EIF5BO60841 1220 aaKnown RBP18■□□□□ 0.47
CLCNKA-202ENST00000375692 TXNDC2Q86VQ3 553 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms