RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 CGNL1Q0VF96 1302 aa18.57■□□□□ 0.56
CD48-201ENST00000368045 PIK3C2BO00750 1634 aa18.56■□□□□ 0.56
CD48-201ENST00000368045 GGT6Q6P531 493 aa18.56■□□□□ 0.56
CD48-201ENST00000368045 CAMSAP1Q5T5Y3 1602 aa18.56■□□□□ 0.56
CD48-201ENST00000368045 VGFO15240 615 aaPredicted RBP18.55■□□□□ 0.56
CD48-201ENST00000368045 WWC1Q8IX03 1113 aa18.55■□□□□ 0.56
CD48-201ENST00000368045 RUNDC1Q96C34 613 aa18.55■□□□□ 0.56
CD48-201ENST00000368045 FAM161AQ3B820 660 aa18.55■□□□□ 0.56
CD48-201ENST00000368045 USP35Q9P2H5 1018 aa18.55■□□□□ 0.56
CD48-201ENST00000368045 IQSEC2Q5JU85 1478 aa18.55■□□□□ 0.56
CD48-201ENST00000368045 SHPRHQ149N8 1683 aa18.55■□□□□ 0.56
CD48-201ENST00000368045 EVC2Q86UK5 1308 aa18.55■□□□□ 0.56
CD48-201ENST00000368045 AAMPQ13685 434 aa18.54■□□□□ 0.56
CD48-201ENST00000368045 ZFYVE9O95405 1425 aa18.54■□□□□ 0.56
CD48-201ENST00000368045 PPM1GO15355 546 aaPredicted RBP18.53■□□□□ 0.56
CD48-201ENST00000368045 OSCARQ8IYS5 282 aa18.53■□□□□ 0.56
CD48-201ENST00000368045 CFAP53Q96M91 514 aa18.53■□□□□ 0.56
CD48-201ENST00000368045 PHF23Q9BUL5 403 aaPredicted RBP18.53■□□□□ 0.56
CD48-201ENST00000368045 SLC12A5Q9H2X9 1139 aa18.53■□□□□ 0.56
CD48-201ENST00000368045 GLI2P10070 1586 aa18.53■□□□□ 0.56
CD48-201ENST00000368045 ANKRD36BQ8N2N9 1353 aa18.53■□□□□ 0.56
CD48-201ENST00000368045 NEXMIFQ5QGS0 1516 aa18.52■□□□□ 0.56
CD48-201ENST00000368045 BCAR3O75815 825 aa18.52■□□□□ 0.55
CD48-201ENST00000368045 CCDC27Q2M243 656 aa18.52■□□□□ 0.55
CD48-201ENST00000368045 WDR63Q8IWG1 891 aa18.52■□□□□ 0.55
CD48-201ENST00000368045 DIP2CQ9Y2E4 1556 aa18.5■□□□□ 0.55
CD48-201ENST00000368045 TMEM132EQ6IEE7 984 aa18.5■□□□□ 0.55
CD48-201ENST00000368045 DMRT2Q9Y5R5 561 aa18.5■□□□□ 0.55
CD48-201ENST00000368045 TULP4Q9NRJ4 1543 aa18.49■□□□□ 0.55
CD48-201ENST00000368045 SKAP1Q86WV1 359 aa18.49■□□□□ 0.55
CD48-201ENST00000368045 C8orf34Q49A92 452 aa18.48■□□□□ 0.55
CD48-201ENST00000368045 ARHGEF28Q8N1W1 1705 aaKnown RBP18.48■□□□□ 0.55
CD48-201ENST00000368045 SLC52A1Q9NWF4 448 aa18.47■□□□□ 0.55
CD48-201ENST00000368045 SIGLEC1Q9BZZ2 1709 aa18.47■□□□□ 0.55
CD48-201ENST00000368045 TCP11L2Q8N4U5 519 aa18.47■□□□□ 0.55
CD48-201ENST00000368045 MTHFSP49914 203 aa18.45■□□□□ 0.54
CD48-201ENST00000368045 CLUAP1Q96AJ1 413 aa18.45■□□□□ 0.54
CD48-201ENST00000368045 CANXP27824 592 aaKnown RBP18.45■□□□□ 0.54
CD48-201ENST00000368045 MAPK8IP3Q9UPT6 1336 aa18.44■□□□□ 0.54
CD48-201ENST00000368045 RARSP54136 660 aaKnown RBP18.44■□□□□ 0.54
CD48-201ENST00000368045 TNNT2P45379 298 aaPredicted RBP18.42■□□□□ 0.54
CD48-201ENST00000368045 MYH16Q9H6N6 1097 aa18.42■□□□□ 0.54
CD48-201ENST00000368045 ZMYM3Q14202 1370 aa18.42■□□□□ 0.54
CD48-201ENST00000368045 ABCC11Q96J66 1382 aa18.42■□□□□ 0.54
CD48-201ENST00000368045 RAPGEF3O95398 923 aa18.42■□□□□ 0.54
CD48-201ENST00000368045 CT47B1P0C2W7 299 aaPredicted RBP18.41■□□□□ 0.54
CD48-201ENST00000368045 ATAD2Q6PL18 1390 aa18.41■□□□□ 0.54
CD48-201ENST00000368045 ADGRB2O60241 1585 aa18.41■□□□□ 0.54
CD48-201ENST00000368045 MED14O60244 1454 aa18.4■□□□□ 0.54
CD48-201ENST00000368045 NEFMP07197 916 aa18.4■□□□□ 0.54
CD48-201ENST00000368045 IDI1Q13907 227 aa18.4■□□□□ 0.54
CD48-201ENST00000368045 PMFBP1Q8TBY8 1022 aa18.4■□□□□ 0.54
CD48-201ENST00000368045 DAXXQ9UER7 740 aaPredicted RBP18.4■□□□□ 0.54
CD48-201ENST00000368045 RICTORQ6R327 1708 aa18.4■□□□□ 0.54
CD48-201ENST00000368045 CFAP65Q6ZU64 1925 aaKnown RBP18.4■□□□□ 0.54
CD48-201ENST00000368045 IGHDP01880 384 aa18.4■□□□□ 0.54
CD48-201ENST00000368045 RGS3P49796 1198 aa18.4■□□□□ 0.54
CD48-201ENST00000368045 LAS1LQ9Y4W2 734 aaKnown RBP18.4■□□□□ 0.54
CD48-201ENST00000368045 PANK1Q8TE04 598 aa18.38■□□□□ 0.53
CD48-201ENST00000368045 COG6Q9Y2V7 657 aa18.38■□□□□ 0.53
CD48-201ENST00000368045 RRP7AQ9Y3A4 280 aaKnown RBP18.37■□□□□ 0.53
CD48-201ENST00000368045 NEUROD2Q15784 382 aa18.37■□□□□ 0.53
CD48-201ENST00000368045 CABP2Q9NPB3 220 aa18.37■□□□□ 0.53
CD48-201ENST00000368045 A0A1W2PP64 1363 aa18.36■□□□□ 0.53
CD48-201ENST00000368045 PTPRMP28827 1452 aa18.36■□□□□ 0.53
CD48-201ENST00000368045 U2AF1L5P0DN76 240 aaPredicted RBP18.36■□□□□ 0.53
CD48-201ENST00000368045 U2AF1Q01081 240 aaKnown RBP eCLIP18.36■□□□□ 0.53
CD48-201ENST00000368045 TMEM131LA2VDJ0 1609 aa18.36■□□□□ 0.53
CD48-201ENST00000368045 FRAT1Q92837 279 aaPredicted RBP18.35■□□□□ 0.53
CD48-201ENST00000368045 TERF2IPQ9NYB0 399 aa18.35■□□□□ 0.53
CD48-201ENST00000368045 CLTCQ00610 1675 aaKnown RBP18.35■□□□□ 0.53
CD48-201ENST00000368045 PREX1Q8TCU6 1659 aa18.34■□□□□ 0.53
CD48-201ENST00000368045 COL3A1P02461 1466 aaPredicted RBP18.34■□□□□ 0.53
CD48-201ENST00000368045 NUTM2DQ5VT03 806 aaPredicted RBP18.33■□□□□ 0.53
CD48-201ENST00000368045 IL16Q14005 1332 aa18.33■□□□□ 0.52
CD48-201ENST00000368045 YEATS2Q9ULM3 1422 aa18.33■□□□□ 0.52
CD48-201ENST00000368045 SRPK2P78362 688 aaKnown RBP18.32■□□□□ 0.52
CD48-201ENST00000368045 YTHDC2Q9H6S0 1430 aaKnown RBP18.32■□□□□ 0.52
CD48-201ENST00000368045 VIRMAQ69YN4 1812 aaKnown RBP18.32■□□□□ 0.52
CD48-201ENST00000368045 PNNQ9H307 717 aaKnown RBP18.31■□□□□ 0.52
CD48-201ENST00000368045 RWDD1Q9H446 243 aaPredicted RBP18.31■□□□□ 0.52
CD48-201ENST00000368045 ANKRD26Q9UPS8 1709 aa18.31■□□□□ 0.52
CD48-201ENST00000368045 PLEKHF1Q96S99 279 aa18.3■□□□□ 0.52
CD48-201ENST00000368045 NLRP1Q9C000 1473 aa18.3■□□□□ 0.52
CD48-201ENST00000368045 RLBP1P12271 317 aa18.3■□□□□ 0.52
CD48-201ENST00000368045 ZKSCAN2Q63HK3 967 aa18.29■□□□□ 0.52
CD48-201ENST00000368045 STK26Q9P289 416 aa18.29■□□□□ 0.52
CD48-201ENST00000368045 PPP6R1Q9UPN7 881 aa18.29■□□□□ 0.52
CD48-201ENST00000368045 CD163L1Q9NR16 1453 aa18.29■□□□□ 0.52
CD48-201ENST00000368045 MVPQ14764 893 aaKnown RBP18.28■□□□□ 0.52
CD48-201ENST00000368045 HDGFL2Q7Z4V5 671 aaPredicted RBP18.28■□□□□ 0.52
CD48-201ENST00000368045 POGKQ9P215 609 aa18.28■□□□□ 0.52
CD48-201ENST00000368045 PNPLA6Q8IY17 1366 aa18.28■□□□□ 0.52
CD48-201ENST00000368045 FYB1O15117 783 aa18.27■□□□□ 0.52
CD48-201ENST00000368045 TMPOP42166 694 aaKnown RBP18.27■□□□□ 0.52
CD48-201ENST00000368045 PRAM1Q96QH2 718 aa18.27■□□□□ 0.52
CD48-201ENST00000368045 PCDHB15Q9Y5E8 787 aa18.27■□□□□ 0.52
CD48-201ENST00000368045 ARHGEF40Q8TER5 1519 aa18.27■□□□□ 0.52
CD48-201ENST00000368045 SAFB2Q14151 953 aaKnown RBP eCLIP18.27■□□□□ 0.51
CD48-201ENST00000368045 NFKBIBQ15653 356 aa18.27■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms