RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 ZRANB1Q9UGI0 708 aa10.53□□□□□ -0.72
SYNE1-206ENST00000367253 SSFA2P28290 1259 aa10.52□□□□□ -0.72
SYNE1-206ENST00000367253 TMEM132AQ24JP5 1023 aa10.52□□□□□ -0.73
SYNE1-206ENST00000367253 NAP1L1P55209 391 aaKnown RBP10.52□□□□□ -0.73
SYNE1-206ENST00000367253 IKQ13123 557 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-206ENST00000367253 SPRYD3Q8NCJ5 442 aa10.52□□□□□ -0.73
SYNE1-206ENST00000367253 NLRP13Q86W25 1043 aa10.52□□□□□ -0.73
SYNE1-206ENST00000367253 LRRC9Q6ZRR7 1453 aa10.51□□□□□ -0.73
SYNE1-206ENST00000367253 WDR97A6NE52 1622 aa10.51□□□□□ -0.73
SYNE1-206ENST00000367253 TRIM21P19474 475 aaKnown RBP10.51□□□□□ -0.73
SYNE1-206ENST00000367253 CPLX2Q6PUV4 134 aaKnown RBP10.51□□□□□ -0.73
SYNE1-206ENST00000367253 SAMD1Q6SPF0 538 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-206ENST00000367253 AAMPQ13685 434 aa10.51□□□□□ -0.73
SYNE1-206ENST00000367253 PRG4Q92954 1404 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-206ENST00000367253 TPM4P67936 248 aa10.5□□□□□ -0.73
SYNE1-206ENST00000367253 GPS2Q13227 327 aa10.5□□□□□ -0.73
SYNE1-206ENST00000367253 RBM42Q9BTD8 480 aaKnown RBP10.5□□□□□ -0.73
SYNE1-206ENST00000367253 DEF6Q9H4E7 631 aa10.5□□□□□ -0.73
SYNE1-206ENST00000367253 GNL3LQ9NVN8 582 aaKnown RBP10.5□□□□□ -0.73
SYNE1-206ENST00000367253 EVC2Q86UK5 1308 aa10.5□□□□□ -0.73
SYNE1-206ENST00000367253 TMCO5BA8MYB1 307 aa10.5□□□□□ -0.73
SYNE1-206ENST00000367253 C11orf95C9JLR9 678 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-206ENST00000367253 HIRIP3Q9BW71 556 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-206ENST00000367253 MPHOSPH10O00566 681 aaKnown RBP10.5□□□□□ -0.73
SYNE1-206ENST00000367253 LMOD1P29536 600 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-206ENST00000367253 GRM1Q13255 1194 aa10.5□□□□□ -0.73
SYNE1-206ENST00000367253 IPO4Q8TEX9 1081 aaKnown RBP10.5□□□□□ -0.73
SYNE1-206ENST00000367253 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.5□□□□□ -0.73
SYNE1-206ENST00000367253 ZNF652Q9Y2D9 606 aa10.5□□□□□ -0.73
SYNE1-206ENST00000367253 VGLL3A8MV65 326 aa10.49□□□□□ -0.73
SYNE1-206ENST00000367253 STK32BQ9NY57 414 aa10.49□□□□□ -0.73
SYNE1-206ENST00000367253 U2AF1L5P0DN76 240 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-206ENST00000367253 U2AF1Q01081 240 aaKnown RBP eCLIP10.49□□□□□ -0.73
SYNE1-206ENST00000367253 MAP3K1Q13233 1512 aa10.49□□□□□ -0.73
SYNE1-206ENST00000367253 ADAMTS2O95450 1211 aa10.49□□□□□ -0.73
SYNE1-206ENST00000367253 AXDND1Q5T1B0 1012 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-206ENST00000367253 PPM1FP49593 454 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-206ENST00000367253 GPR162Q16538 588 aa10.48□□□□□ -0.73
SYNE1-206ENST00000367253 MTERF4Q7Z6M4 381 aaKnown RBP10.48□□□□□ -0.73
SYNE1-206ENST00000367253 CADPS2Q86UW7 1296 aa10.48□□□□□ -0.73
SYNE1-206ENST00000367253 SLKQ9H2G2 1235 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-206ENST00000367253 SMG6Q86US8 1419 aaKnown RBP10.48□□□□□ -0.73
SYNE1-206ENST00000367253 NUP155O75694 1391 aa10.48□□□□□ -0.73
SYNE1-206ENST00000367253 ZPR1O75312 459 aa10.48□□□□□ -0.73
SYNE1-206ENST00000367253 CCDC47Q96A33 483 aaKnown RBP10.48□□□□□ -0.73
SYNE1-206ENST00000367253 RBM5P52756 815 aaKnown RBP eCLIP10.48□□□□□ -0.73
SYNE1-206ENST00000367253 FRAT1Q92837 279 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-206ENST00000367253 IPO9Q96P70 1041 aaKnown RBP10.48□□□□□ -0.73
SYNE1-206ENST00000367253 BIN2Q9UBW5 565 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-206ENST00000367253 STAC3Q96MF2 364 aa10.47□□□□□ -0.73
SYNE1-206ENST00000367253 CGNQ9P2M7 1197 aaKnown RBP10.47□□□□□ -0.73
SYNE1-206ENST00000367253 RBM27Q9P2N5 1060 aaKnown RBP10.47□□□□□ -0.73
SYNE1-206ENST00000367253 TEX35Q5T0J7 233 aa10.47□□□□□ -0.73
SYNE1-206ENST00000367253 MPHOSPH6Q99547 160 aaKnown RBP10.47□□□□□ -0.73
SYNE1-206ENST00000367253 RDXP35241 583 aaKnown RBP10.46□□□□□ -0.73
SYNE1-206ENST00000367253 SLC3A2P08195 630 aaKnown RBP10.46□□□□□ -0.73
SYNE1-206ENST00000367253 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.46□□□□□ -0.73
SYNE1-206ENST00000367253 DYDC1Q8WWB3 177 aa10.46□□□□□ -0.73
SYNE1-206ENST00000367253 MYOM3Q5VTT5 1437 aa10.46□□□□□ -0.73
SYNE1-206ENST00000367253 SPG7Q9UQ90 795 aa10.46□□□□□ -0.74
SYNE1-206ENST00000367253 TPM3P06753 285 aa10.46□□□□□ -0.74
SYNE1-206ENST00000367253 MRVI1Q9Y6F6 885 aa10.46□□□□□ -0.74
SYNE1-206ENST00000367253 ROCK1Q13464 1354 aa10.45□□□□□ -0.74
SYNE1-206ENST00000367253 DHX57Q6P158 1386 aaKnown RBP10.45□□□□□ -0.74
SYNE1-206ENST00000367253 TCERG1O14776 1098 aaKnown RBP10.45□□□□□ -0.74
SYNE1-206ENST00000367253 NLRP6P59044 892 aa10.45□□□□□ -0.74
SYNE1-206ENST00000367253 PLEKHO1Q53GL0 409 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-206ENST00000367253 ZFP91Q96JP5 570 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-206ENST00000367253 PKD2Q13563 968 aa10.45□□□□□ -0.74
SYNE1-206ENST00000367253 ABCA5Q8WWZ7 1642 aa10.45□□□□□ -0.74
SYNE1-206ENST00000367253 TDO2P48775 406 aa10.45□□□□□ -0.74
SYNE1-206ENST00000367253 GSE1Q14687 1217 aa10.45□□□□□ -0.74
SYNE1-206ENST00000367253 FGD6Q6ZV73 1430 aa10.44□□□□□ -0.74
SYNE1-206ENST00000367253 AK7Q96M32 723 aa10.44□□□□□ -0.74
SYNE1-206ENST00000367253 TIAM1Q13009 1591 aa10.44□□□□□ -0.74
SYNE1-206ENST00000367253 CABP2Q9NPB3 220 aa10.44□□□□□ -0.74
SYNE1-206ENST00000367253 ADAMTS12P58397 1594 aa10.44□□□□□ -0.74
SYNE1-206ENST00000367253 HECW1Q76N89 1606 aa10.44□□□□□ -0.74
SYNE1-206ENST00000367253 RRP12Q5JTH9 1297 aaKnown RBP10.43□□□□□ -0.74
SYNE1-206ENST00000367253 PIK3R5Q8WYR1 880 aa10.43□□□□□ -0.74
SYNE1-206ENST00000367253 HMGN5P82970 282 aaKnown RBP10.43□□□□□ -0.74
SYNE1-206ENST00000367253 LMTK3Q96Q04 1460 aa10.43□□□□□ -0.74
SYNE1-206ENST00000367253 PHF14O94880 888 aa10.43□□□□□ -0.74
SYNE1-206ENST00000367253 RRBP1Q9P2E9 1410 aaKnown RBP10.43□□□□□ -0.74
SYNE1-206ENST00000367253 RAB3GAP2Q9H2M9 1393 aa10.43□□□□□ -0.74
SYNE1-206ENST00000367253 SENP3-EIF4A1A0A087X0R7 540 aa10.43□□□□□ -0.74
SYNE1-206ENST00000367253 GOLIM4O00461 696 aa10.43□□□□□ -0.74
SYNE1-206ENST00000367253 ABTB2Q8N961 1025 aa10.43□□□□□ -0.74
SYNE1-206ENST00000367253 MSH6P52701 1360 aa10.42□□□□□ -0.74
SYNE1-206ENST00000367253 ERICH2A1L162 156 aa10.42□□□□□ -0.74
SYNE1-206ENST00000367253 EHBP1L1Q8N3D4 1523 aa10.42□□□□□ -0.74
SYNE1-206ENST00000367253 BCL2L13Q9BXK5 485 aa10.42□□□□□ -0.74
SYNE1-206ENST00000367253 NCOA2Q15596 1464 aa10.42□□□□□ -0.74
SYNE1-206ENST00000367253 TROQ12816 1431 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-206ENST00000367253 PHLDB1Q86UU1 1377 aa10.42□□□□□ -0.74
SYNE1-206ENST00000367253 MYO1BO43795 1136 aa10.42□□□□□ -0.74
SYNE1-206ENST00000367253 PMFBP1Q8TBY8 1022 aa10.42□□□□□ -0.74
SYNE1-206ENST00000367253 TARBP1Q13395 1621 aaKnown RBP10.42□□□□□ -0.74
SYNE1-206ENST00000367253 PES1O00541 588 aaKnown RBP10.42□□□□□ -0.74
SYNE1-206ENST00000367253 BRPF3Q9ULD4 1205 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms