RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 LTV1Q96GA3 475 aaPredicted RBP11.01□□□□□ -0.65
SYNE1-205ENST00000367251 SNAPC4Q5SXM2 1469 aa11□□□□□ -0.65
SYNE1-205ENST00000367251 WDR63Q8IWG1 891 aa11□□□□□ -0.65
SYNE1-205ENST00000367251 CCAR1Q8IX12 1150 aaKnown RBP11□□□□□ -0.65
SYNE1-205ENST00000367251 FOXD4L1Q9NU39 408 aa11□□□□□ -0.65
SYNE1-205ENST00000367251 THOC2Q8NI27 1593 aaKnown RBP11□□□□□ -0.65
SYNE1-205ENST00000367251 RILPL2Q969X0 211 aa11□□□□□ -0.65
SYNE1-205ENST00000367251 DIAPH3Q9NSV4 1193 aa11□□□□□ -0.65
SYNE1-205ENST00000367251 CDC45O75419 566 aa11□□□□□ -0.65
SYNE1-205ENST00000367251 SYTL4Q96C24 671 aaPredicted RBP11□□□□□ -0.65
SYNE1-205ENST00000367251 AKNAQ7Z591 1439 aa10.99□□□□□ -0.65
SYNE1-205ENST00000367251 ZKSCAN1P17029 563 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-205ENST00000367251 NEXNQ0ZGT2 675 aa10.99□□□□□ -0.65
SYNE1-205ENST00000367251 NESP48681 1621 aa10.99□□□□□ -0.65
SYNE1-205ENST00000367251 SLC4A3P48751 1232 aa10.99□□□□□ -0.65
SYNE1-205ENST00000367251 TEFQ10587 303 aa10.99□□□□□ -0.65
SYNE1-205ENST00000367251 ANKRD30BQ9BXX2 1392 aa10.99□□□□□ -0.65
SYNE1-205ENST00000367251 DDX58O95786 925 aaKnown RBP10.99□□□□□ -0.65
SYNE1-205ENST00000367251 RNF20Q5VTR2 975 aa10.98□□□□□ -0.65
SYNE1-205ENST00000367251 GCC1Q96CN9 775 aa10.98□□□□□ -0.65
SYNE1-205ENST00000367251 H3BQV1 296 aa10.97□□□□□ -0.65
SYNE1-205ENST00000367251 IFFO2Q5TF58 517 aa10.97□□□□□ -0.65
SYNE1-205ENST00000367251 NUTM2FA1L443 756 aa10.97□□□□□ -0.65
SYNE1-205ENST00000367251 ELL2O00472 640 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-205ENST00000367251 AMOTL1Q8IY63 956 aa10.97□□□□□ -0.65
SYNE1-205ENST00000367251 TCP11L2Q8N4U5 519 aa10.97□□□□□ -0.65
SYNE1-205ENST00000367251 NFKBIBQ15653 356 aa10.97□□□□□ -0.65
SYNE1-205ENST00000367251 CAMSAP2Q08AD1 1489 aa10.97□□□□□ -0.65
SYNE1-205ENST00000367251 ERC2O15083 957 aa10.97□□□□□ -0.65
SYNE1-205ENST00000367251 FAM184AQ8NB25 1140 aa10.97□□□□□ -0.65
SYNE1-205ENST00000367251 MTHFSP49914 203 aa10.96□□□□□ -0.66
SYNE1-205ENST00000367251 SF3A1Q15459 793 aaKnown RBP10.96□□□□□ -0.66
SYNE1-205ENST00000367251 CCDC43Q96MW1 224 aaKnown RBP10.96□□□□□ -0.66
SYNE1-205ENST00000367251 KIF14Q15058 1648 aa10.96□□□□□ -0.66
SYNE1-205ENST00000367251 MRE11P49959 708 aa10.96□□□□□ -0.66
SYNE1-205ENST00000367251 PES1O00541 588 aaKnown RBP10.96□□□□□ -0.66
SYNE1-205ENST00000367251 NOL8Q76FK4 1167 aaKnown RBP10.96□□□□□ -0.66
SYNE1-205ENST00000367251 PANK1Q8TE04 598 aa10.96□□□□□ -0.66
SYNE1-205ENST00000367251 ZNF428Q96B54 188 aa10.96□□□□□ -0.66
SYNE1-205ENST00000367251 R3HCC1Q9Y3T6 440 aaKnown RBP10.96□□□□□ -0.66
SYNE1-205ENST00000367251 DHX16O60231 1041 aaKnown RBP10.95□□□□□ -0.66
SYNE1-205ENST00000367251 MCM2P49736 904 aa10.95□□□□□ -0.66
SYNE1-205ENST00000367251 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.95□□□□□ -0.66
SYNE1-205ENST00000367251 CDK13Q14004 1512 aaKnown RBP10.95□□□□□ -0.66
SYNE1-205ENST00000367251 IFIT2P09913 472 aaKnown RBP10.95□□□□□ -0.66
SYNE1-205ENST00000367251 BACH2Q9BYV9 841 aa10.95□□□□□ -0.66
SYNE1-205ENST00000367251 GOLGA6L19H0YKK7 550 aa10.95□□□□□ -0.66
SYNE1-205ENST00000367251 C9orf78Q9NZ63 289 aaPredicted RBP10.95□□□□□ -0.66
SYNE1-205ENST00000367251 MAGI1Q96QZ7 1491 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-205ENST00000367251 ABCC5O15440 1437 aa10.94□□□□□ -0.66
SYNE1-205ENST00000367251 CFAP70Q5T0N1 1121 aa10.94□□□□□ -0.66
SYNE1-205ENST00000367251 CPLX2Q6PUV4 134 aaKnown RBP10.94□□□□□ -0.66
SYNE1-205ENST00000367251 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-205ENST00000367251 CDCA7LQ96GN5 454 aa10.94□□□□□ -0.66
SYNE1-205ENST00000367251 HSP90AA2PQ14568 343 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-205ENST00000367251 NBPF1Q3BBV0 1214 aa10.94□□□□□ -0.66
SYNE1-205ENST00000367251 TSPYL4Q9UJ04 414 aa10.94□□□□□ -0.66
SYNE1-205ENST00000367251 NCOA1Q15788 1441 aa10.93□□□□□ -0.66
SYNE1-205ENST00000367251 GNAI3P08754 354 aa10.93□□□□□ -0.66
SYNE1-205ENST00000367251 SLC52A1Q9NWF4 448 aa10.93□□□□□ -0.66
SYNE1-205ENST00000367251 LETM1O95202 739 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-205ENST00000367251 TTC5Q8N0Z6 440 aa10.93□□□□□ -0.66
SYNE1-205ENST00000367251 FKBP5Q13451 457 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-205ENST00000367251 GAS2L2Q8NHY3 880 aa10.93□□□□□ -0.66
SYNE1-205ENST00000367251 CABP2Q9NPB3 220 aa10.93□□□□□ -0.66
SYNE1-205ENST00000367251 ATAD2Q6PL18 1390 aa10.93□□□□□ -0.66
SYNE1-205ENST00000367251 G3BP1Q13283 466 aaKnown RBP eCLIP10.92□□□□□ -0.66
SYNE1-205ENST00000367251 RPRD2Q5VT52 1461 aaKnown RBP10.92□□□□□ -0.66
SYNE1-205ENST00000367251 RABEP1Q15276 862 aa10.92□□□□□ -0.66
SYNE1-205ENST00000367251 GGNBP2Q9H3C7 697 aa10.92□□□□□ -0.66
SYNE1-205ENST00000367251 TPM3P06753 285 aa10.92□□□□□ -0.66
SYNE1-205ENST00000367251 AKAP17AQ02040 695 aaKnown RBP10.92□□□□□ -0.66
SYNE1-205ENST00000367251 VPS37DQ86XT2 251 aa10.92□□□□□ -0.66
SYNE1-205ENST00000367251 LNPKQ9C0E8 428 aa10.92□□□□□ -0.66
SYNE1-205ENST00000367251 ANO2Q9NQ90 1003 aa10.92□□□□□ -0.66
SYNE1-205ENST00000367251 PDZRN3Q9UPQ7 1066 aa10.92□□□□□ -0.66
SYNE1-205ENST00000367251 ZNF692Q9BU19 519 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-205ENST00000367251 BECN2A8MW95 431 aa10.91□□□□□ -0.66
SYNE1-205ENST00000367251 GOLGA6L1Q8N7Z2 621 aa10.91□□□□□ -0.66
SYNE1-205ENST00000367251 SYNE3Q6ZMZ3 975 aa10.91□□□□□ -0.66
SYNE1-205ENST00000367251 AFAP1Q8N556 730 aa10.91□□□□□ -0.66
SYNE1-205ENST00000367251 CCDC30Q5VVM6 783 aa10.91□□□□□ -0.66
SYNE1-205ENST00000367251 SMC3Q9UQE7 1217 aa10.91□□□□□ -0.66
SYNE1-205ENST00000367251 MBD3O95983 291 aa10.9□□□□□ -0.66
SYNE1-205ENST00000367251 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.9□□□□□ -0.66
SYNE1-205ENST00000367251 HIP1O00291 1037 aa10.9□□□□□ -0.66
SYNE1-205ENST00000367251 HOOK1Q9UJC3 728 aaKnown RBP10.9□□□□□ -0.66
SYNE1-205ENST00000367251 PSMA5P28066 241 aa10.9□□□□□ -0.67
SYNE1-205ENST00000367251 VSIG10Q8N0Z9 540 aa10.9□□□□□ -0.67
SYNE1-205ENST00000367251 RBM33Q96EV2 1170 aaKnown RBP10.9□□□□□ -0.67
SYNE1-205ENST00000367251 EXOSC9Q06265 439 aaKnown RBP10.89□□□□□ -0.67
SYNE1-205ENST00000367251 FOXD4L5Q5VV16 416 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-205ENST00000367251 FOXD4L4Q8WXT5 416 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-205ENST00000367251 UBTFL1P0CB47 393 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-205ENST00000367251 MVPQ14764 893 aaKnown RBP10.89□□□□□ -0.67
SYNE1-205ENST00000367251 CCDC39Q9UFE4 941 aa10.89□□□□□ -0.67
SYNE1-205ENST00000367251 SLFN5Q08AF3 891 aa10.89□□□□□ -0.67
SYNE1-205ENST00000367251 CNTROBQ8N137 903 aa10.89□□□□□ -0.67
SYNE1-205ENST00000367251 TPM1P09493 284 aa10.89□□□□□ -0.67
SYNE1-205ENST00000367251 TRIM29Q14134 588 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms