RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 PRKRIP1Q9H875 184 aaPredicted RBP25.64■■□□□ 1.7
CLN3-204ENST00000357857 CCER2I3L3R5 266 aa25.63■■□□□ 1.69
CLN3-204ENST00000357857 XRN1Q8IZH2 1706 aaKnown RBP25.61■■□□□ 1.69
CLN3-204ENST00000357857 PIK3R4Q99570 1358 aa25.61■■□□□ 1.69
CLN3-204ENST00000357857 ROBO2Q9HCK4 1378 aa25.61■■□□□ 1.69
CLN3-204ENST00000357857 PER1O15534 1290 aaPredicted RBP25.6■■□□□ 1.69
CLN3-204ENST00000357857 NPHP4O75161 1426 aaPredicted RBP25.6■■□□□ 1.69
CLN3-204ENST00000357857 AMOTL2Q9Y2J4 779 aa25.59■■□□□ 1.69
CLN3-204ENST00000357857 CHD2O14647 1828 aaKnown RBP25.58■■□□□ 1.68
CLN3-204ENST00000357857 CABP2Q9NPB3 220 aa25.57■■□□□ 1.68
CLN3-204ENST00000357857 PTCH1Q13635 1447 aa25.57■■□□□ 1.68
CLN3-204ENST00000357857 SRPK2P78362 688 aaKnown RBP25.57■■□□□ 1.68
CLN3-204ENST00000357857 NCKAP5LQ9HCH0 1330 aa25.55■■□□□ 1.68
CLN3-204ENST00000357857 TMC1Q8TDI8 760 aa25.54■■□□□ 1.68
CLN3-204ENST00000357857 CDK19Q9BWU1 502 aa25.54■■□□□ 1.68
CLN3-204ENST00000357857 ATAD2Q6PL18 1390 aa25.54■■□□□ 1.68
CLN3-204ENST00000357857 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.54■■□□□ 1.68
CLN3-204ENST00000357857 ADGRB2O60241 1585 aa25.53■■□□□ 1.68
CLN3-204ENST00000357857 KTN1Q86UP2 1357 aaKnown RBP25.53■■□□□ 1.68
CLN3-204ENST00000357857 CNGB1Q14028 1251 aaPredicted RBP25.53■■□□□ 1.68
CLN3-204ENST00000357857 NINLQ9Y2I6 1382 aa25.52■■□□□ 1.68
CLN3-204ENST00000357857 KNSTRNQ9Y448 316 aa25.52■■□□□ 1.68
CLN3-204ENST00000357857 SLC12A5Q9H2X9 1139 aa25.51■■□□□ 1.68
CLN3-204ENST00000357857 WASLO00401 505 aaPredicted RBP25.49■■□□□ 1.67
CLN3-204ENST00000357857 RALBP1Q15311 655 aa25.49■■□□□ 1.67
CLN3-204ENST00000357857 LMTK3Q96Q04 1460 aa25.48■■□□□ 1.67
CLN3-204ENST00000357857 KCNA6P17658 529 aa25.47■■□□□ 1.67
CLN3-204ENST00000357857 PARD3Q8TEW0 1356 aa25.47■■□□□ 1.67
CLN3-204ENST00000357857 ANKRD36BQ8N2N9 1353 aa25.46■■□□□ 1.67
CLN3-204ENST00000357857 CARD14Q9BXL6 1004 aa25.46■■□□□ 1.67
CLN3-204ENST00000357857 AMER1Q5JTC6 1135 aaPredicted RBP25.45■■□□□ 1.66
CLN3-204ENST00000357857 CC2D1BQ5T0F9 858 aaKnown RBP25.45■■□□□ 1.66
CLN3-204ENST00000357857 NPC1L1Q9UHC9 1359 aa25.44■■□□□ 1.66
CLN3-204ENST00000357857 HSPA2P54652 639 aa25.44■■□□□ 1.66
CLN3-204ENST00000357857 YTHDC1Q96MU7 727 aaKnown RBP25.44■■□□□ 1.66
CLN3-204ENST00000357857 USP32Q8NFA0 1604 aa25.43■■□□□ 1.66
CLN3-204ENST00000357857 NSD3Q9BZ95 1437 aa25.43■■□□□ 1.66
CLN3-204ENST00000357857 NWD1Q149M9 1564 aa25.42■■□□□ 1.66
CLN3-204ENST00000357857 MYBBP1AQ9BQG0 1328 aaKnown RBP25.41■■□□□ 1.66
CLN3-204ENST00000357857 CCDC184Q52MB2 194 aa25.4■■□□□ 1.66
CLN3-204ENST00000357857 MRS2Q9HD23 443 aa25.39■■□□□ 1.65
CLN3-204ENST00000357857 TERF2IPQ9NYB0 399 aa25.39■■□□□ 1.65
CLN3-204ENST00000357857 A0A1W2PP64 1363 aa25.39■■□□□ 1.65
CLN3-204ENST00000357857 ATP7BP35670 1465 aa25.38■■□□□ 1.65
CLN3-204ENST00000357857 CD163L1Q9NR16 1453 aa25.38■■□□□ 1.65
CLN3-204ENST00000357857 NUDT16Q96DE0 195 aaKnown RBP25.38■■□□□ 1.65
CLN3-204ENST00000357857 CABP1Q9NZU7 370 aa25.38■■□□□ 1.65
CLN3-204ENST00000357857 STRCQ7RTU9 1775 aa25.37■■□□□ 1.65
CLN3-204ENST00000357857 TOPAZ1Q8N9V7 1692 aa25.36■■□□□ 1.65
CLN3-204ENST00000357857 PPIP5K1Q6PFW1 1433 aa25.36■■□□□ 1.65
CLN3-204ENST00000357857 NALCNQ8IZF0 1738 aa25.36■■□□□ 1.65
CLN3-204ENST00000357857 HDGFL2Q7Z4V5 671 aaPredicted RBP25.35■■□□□ 1.65
CLN3-204ENST00000357857 CCDC61Q9Y6R9 512 aa25.34■■□□□ 1.65
CLN3-204ENST00000357857 PRR36Q9H6K5 1346 aa25.34■■□□□ 1.65
CLN3-204ENST00000357857 ITSN1Q15811 1721 aa25.34■■□□□ 1.65
CLN3-204ENST00000357857 BRD4O60885 1362 aaPredicted RBP25.33■■□□□ 1.65
CLN3-204ENST00000357857 CDC42BPGQ6DT37 1551 aa25.33■■□□□ 1.65
CLN3-204ENST00000357857 CGNL1Q0VF96 1302 aa25.33■■□□□ 1.65
CLN3-204ENST00000357857 NLRP13Q86W25 1043 aa25.32■■□□□ 1.64
CLN3-204ENST00000357857 FMN2Q9NZ56 1722 aa25.32■■□□□ 1.64
CLN3-204ENST00000357857 AKAP12Q02952 1782 aa25.32■■□□□ 1.64
CLN3-204ENST00000357857 NKTRP30414 1462 aaKnown RBP25.31■■□□□ 1.64
CLN3-204ENST00000357857 RGPD8O14715 1765 aaPredicted RBP25.3■■□□□ 1.64
CLN3-204ENST00000357857 NSD2O96028 1365 aa25.29■■□□□ 1.64
CLN3-204ENST00000357857 CPSF1Q10570 1443 aaKnown RBP25.29■■□□□ 1.64
CLN3-204ENST00000357857 MON2Q7Z3U7 1717 aa25.29■■□□□ 1.64
CLN3-204ENST00000357857 STRCP1A6NGW2 1772 aa25.28■■□□□ 1.64
CLN3-204ENST00000357857 ADGRL3Q9HAR2 1447 aa25.28■■□□□ 1.64
CLN3-204ENST00000357857 KIF20BQ96Q89 1820 aa25.28■■□□□ 1.64
CLN3-204ENST00000357857 ANKRD26Q9UPS8 1709 aa25.27■■□□□ 1.64
CLN3-204ENST00000357857 NUTM2FA1L443 756 aa25.26■■□□□ 1.63
CLN3-204ENST00000357857 ANKARQ7Z5J8 1434 aa25.26■■□□□ 1.63
CLN3-204ENST00000357857 PPP2R1AP30153 589 aa25.26■■□□□ 1.63
CLN3-204ENST00000357857 RBM33Q96EV2 1170 aaKnown RBP25.24■■□□□ 1.63
CLN3-204ENST00000357857 PLEKHG3A1L390 1219 aa25.23■■□□□ 1.63
CLN3-204ENST00000357857 CENPBP07199 599 aaPredicted RBP25.23■■□□□ 1.63
CLN3-204ENST00000357857 MORC1Q86VD1 984 aa25.23■■□□□ 1.63
CLN3-204ENST00000357857 PROSER2Q86WR7 435 aaPredicted RBP25.23■■□□□ 1.63
CLN3-204ENST00000357857 FAM9BQ8IZU0 186 aa25.23■■□□□ 1.63
CLN3-204ENST00000357857 EDC4Q6P2E9 1401 aaKnown RBP25.22■■□□□ 1.63
CLN3-204ENST00000357857 ZNF692Q9BU19 519 aaPredicted RBP25.21■■□□□ 1.63
CLN3-204ENST00000357857 C14orf37Q86TY3 774 aa25.2■■□□□ 1.63
CLN3-204ENST00000357857 PNISRQ8TF01 805 aaKnown RBP25.19■■□□□ 1.62
CLN3-204ENST00000357857 ACEP12821 1306 aa25.19■■□□□ 1.62
CLN3-204ENST00000357857 FYB1O15117 783 aa25.18■■□□□ 1.62
CLN3-204ENST00000357857 NRKQ7Z2Y5 1582 aa25.18■■□□□ 1.62
CLN3-204ENST00000357857 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.16■■□□□ 1.62
CLN3-204ENST00000357857 GGNBP2Q9H3C7 697 aa25.16■■□□□ 1.62
CLN3-204ENST00000357857 POLR3AO14802 1390 aaPredicted RBP25.15■■□□□ 1.62
CLN3-204ENST00000357857 NCOA3Q9Y6Q9 1424 aa25.14■■□□□ 1.62
CLN3-204ENST00000357857 PMFBP1Q8TBY8 1022 aa25.14■■□□□ 1.61
CLN3-204ENST00000357857 USP6P35125 1406 aa25.14■■□□□ 1.61
CLN3-204ENST00000357857 TMEM94Q12767 1356 aa25.13■■□□□ 1.61
CLN3-204ENST00000357857 TNNT2P45379 298 aaPredicted RBP25.12■■□□□ 1.61
CLN3-204ENST00000357857 NGDNQ8NEJ9 315 aaKnown RBP25.12■■□□□ 1.61
CLN3-204ENST00000357857 C19orf44Q9H6X5 657 aa25.11■■□□□ 1.61
CLN3-204ENST00000357857 XIRP1Q702N8 1843 aaKnown RBP25.11■■□□□ 1.61
CLN3-204ENST00000357857 HNRNPUQ00839 825 aaKnown RBP eCLIP25.09■■□□□ 1.61
CLN3-204ENST00000357857 DMRT2Q9Y5R5 561 aa25.09■■□□□ 1.61
CLN3-204ENST00000357857 TTC21BQ7Z4L5 1316 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms