RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 NAA30Q147X3 362 aaPredicted RBP12.85□□□□□ -0.35
PCDH1-202ENST00000357517 RIOK3O14730 519 aaKnown RBP12.85□□□□□ -0.35
PCDH1-202ENST00000357517 PTMSP20962 102 aa12.85□□□□□ -0.35
PCDH1-202ENST00000357517 CHAF1AQ13111 956 aaPredicted RBP12.85□□□□□ -0.35
PCDH1-202ENST00000357517 USP25Q9UHP3 1055 aa12.84□□□□□ -0.35
PCDH1-202ENST00000357517 RPRD2Q5VT52 1461 aaKnown RBP12.84□□□□□ -0.35
PCDH1-202ENST00000357517 PATL2C9JE40 543 aaKnown RBP12.84□□□□□ -0.35
PCDH1-202ENST00000357517 K7ELQ4 463 aaPredicted RBP12.84□□□□□ -0.35
PCDH1-202ENST00000357517 HDAC5Q9UQL6 1122 aa12.84□□□□□ -0.35
PCDH1-202ENST00000357517 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.84□□□□□ -0.35
PCDH1-202ENST00000357517 TULP1O00294 542 aaPredicted RBP12.83□□□□□ -0.35
PCDH1-202ENST00000357517 ZNF445P59923 1031 aa12.83□□□□□ -0.35
PCDH1-202ENST00000357517 TMEM63CQ9P1W3 806 aa12.83□□□□□ -0.35
PCDH1-202ENST00000357517 FYCO1Q9BQS8 1478 aa12.83□□□□□ -0.35
PCDH1-202ENST00000357517 KDM6BO15054 1643 aa12.83□□□□□ -0.36
PCDH1-202ENST00000357517 PER1O15534 1290 aaPredicted RBP12.83□□□□□ -0.36
PCDH1-202ENST00000357517 PRIMPOLQ96LW4 560 aa12.83□□□□□ -0.36
PCDH1-202ENST00000357517 CIZ1Q9ULV3 898 aaPredicted RBP12.83□□□□□ -0.36
PCDH1-202ENST00000357517 PARD3Q8TEW0 1356 aa12.83□□□□□ -0.36
PCDH1-202ENST00000357517 CASKIN1Q8WXD9 1431 aa12.83□□□□□ -0.36
PCDH1-202ENST00000357517 TEX14Q8IWB6 1497 aa12.82□□□□□ -0.36
PCDH1-202ENST00000357517 CCDC66A2RUB6 948 aa12.82□□□□□ -0.36
PCDH1-202ENST00000357517 NPHP1O15259 732 aa12.82□□□□□ -0.36
PCDH1-202ENST00000357517 MCM5P33992 734 aa12.82□□□□□ -0.36
PCDH1-202ENST00000357517 GPT2Q8TD30 523 aa12.82□□□□□ -0.36
PCDH1-202ENST00000357517 DDIT3P35638 169 aa12.82□□□□□ -0.36
PCDH1-202ENST00000357517 PDE3AQ14432 1141 aa12.82□□□□□ -0.36
PCDH1-202ENST00000357517 SPC24Q8NBT2 197 aa12.82□□□□□ -0.36
PCDH1-202ENST00000357517 MYCNP04198 464 aaPredicted RBP12.82□□□□□ -0.36
PCDH1-202ENST00000357517 LMBRD1Q9NUN5 540 aa12.82□□□□□ -0.36
PCDH1-202ENST00000357517 RNF216Q9NWF9 866 aaPredicted RBP12.82□□□□□ -0.36
PCDH1-202ENST00000357517 CAPN2P17655 700 aa12.81□□□□□ -0.36
PCDH1-202ENST00000357517 CADPSQ9ULU8 1353 aa12.81□□□□□ -0.36
PCDH1-202ENST00000357517 RAD54L2Q9Y4B4 1467 aa12.81□□□□□ -0.36
PCDH1-202ENST00000357517 KNSTRNQ9Y448 316 aa12.81□□□□□ -0.36
PCDH1-202ENST00000357517 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.8□□□□□ -0.36
PCDH1-202ENST00000357517 ZNF777Q9ULD5 760 aaPredicted RBP12.8□□□□□ -0.36
PCDH1-202ENST00000357517 V9GYY5 206 aaPredicted RBP12.8□□□□□ -0.36
PCDH1-202ENST00000357517 ZNF644Q9H582 1327 aaPredicted RBP12.8□□□□□ -0.36
PCDH1-202ENST00000357517 NOL8Q76FK4 1167 aaKnown RBP12.8□□□□□ -0.36
PCDH1-202ENST00000357517 AK9Q5TCS8 1911 aa12.8□□□□□ -0.36
PCDH1-202ENST00000357517 PPP2R1AP30153 589 aa12.79□□□□□ -0.36
PCDH1-202ENST00000357517 LRSAM1Q6UWE0 723 aa12.79□□□□□ -0.36
PCDH1-202ENST00000357517 GDPD2Q9HCC8 539 aa12.79□□□□□ -0.36
PCDH1-202ENST00000357517 ST7Q9NRC1 585 aa12.79□□□□□ -0.36
PCDH1-202ENST00000357517 ITPRIPQ8IWB1 547 aa12.79□□□□□ -0.36
PCDH1-202ENST00000357517 ZNF592Q92610 1267 aa12.79□□□□□ -0.36
PCDH1-202ENST00000357517 BCCIPQ9P287 314 aaKnown RBP eCLIP12.79□□□□□ -0.36
PCDH1-202ENST00000357517 ABCA5Q8WWZ7 1642 aa12.78□□□□□ -0.36
PCDH1-202ENST00000357517 PIBF1Q8WXW3 757 aa12.78□□□□□ -0.36
PCDH1-202ENST00000357517 SLFN14P0C7P3 912 aa12.78□□□□□ -0.36
PCDH1-202ENST00000357517 ZGPATQ8N5A5 531 aaKnown RBP12.78□□□□□ -0.36
PCDH1-202ENST00000357517 OGFRQ9NZT2 677 aa12.78□□□□□ -0.36
PCDH1-202ENST00000357517 EP400NLQ6ZTU2 488 aa12.77□□□□□ -0.36
PCDH1-202ENST00000357517 TOMM22Q9NS69 142 aa12.77□□□□□ -0.36
PCDH1-202ENST00000357517 BLMP54132 1417 aaPredicted RBP12.77□□□□□ -0.37
PCDH1-202ENST00000357517 ZMYM4Q5VZL5 1548 aa12.77□□□□□ -0.37
PCDH1-202ENST00000357517 LOC102724159A0A0B4J2E5 919 aa12.77□□□□□ -0.37
PCDH1-202ENST00000357517 U2SURPO15042 1029 aaKnown RBP12.77□□□□□ -0.37
PCDH1-202ENST00000357517 PWP2Q15269 919 aaKnown RBP12.77□□□□□ -0.37
PCDH1-202ENST00000357517 RBM25P49756 843 aaKnown RBP12.76□□□□□ -0.37
PCDH1-202ENST00000357517 SNX21Q969T3 373 aa12.76□□□□□ -0.37
PCDH1-202ENST00000357517 SLC52A1Q9NWF4 448 aa12.76□□□□□ -0.37
PCDH1-202ENST00000357517 NKTRP30414 1462 aaKnown RBP12.76□□□□□ -0.37
PCDH1-202ENST00000357517 ADCY5O95622 1261 aa12.76□□□□□ -0.37
PCDH1-202ENST00000357517 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.76□□□□□ -0.37
PCDH1-202ENST00000357517 TSPY26PQ9H489 355 aa12.76□□□□□ -0.37
PCDH1-202ENST00000357517 KIF16BQ96L93 1317 aa12.76□□□□□ -0.37
PCDH1-202ENST00000357517 PRR29P0C7W0 189 aa12.75□□□□□ -0.37
PCDH1-202ENST00000357517 C16orf45Q96MC5 204 aaPredicted RBP12.75□□□□□ -0.37
PCDH1-202ENST00000357517 DIAPH3Q9NSV4 1193 aa12.75□□□□□ -0.37
PCDH1-202ENST00000357517 GTF2F1P35269 517 aaKnown RBP eCLIP12.75□□□□□ -0.37
PCDH1-202ENST00000357517 SRPK2P78362 688 aaKnown RBP12.75□□□□□ -0.37
PCDH1-202ENST00000357517 RTEL1-TNFRSF6BF6WH68 1400 aa12.75□□□□□ -0.37
PCDH1-202ENST00000357517 ZNF521Q96K83 1311 aa12.74□□□□□ -0.37
PCDH1-202ENST00000357517 TERF2Q15554 542 aa12.74□□□□□ -0.37
PCDH1-202ENST00000357517 EFCAB5A4FU69 1503 aa12.74□□□□□ -0.37
PCDH1-202ENST00000357517 RARSP54136 660 aaKnown RBP12.73□□□□□ -0.37
PCDH1-202ENST00000357517 FAM193AP78312 1265 aa12.73□□□□□ -0.37
PCDH1-202ENST00000357517 GPATCH11Q8N954 259 aa12.73□□□□□ -0.37
PCDH1-202ENST00000357517 RSPH14Q9UHP6 348 aa12.73□□□□□ -0.37
PCDH1-202ENST00000357517 C14orf37Q86TY3 774 aa12.73□□□□□ -0.37
PCDH1-202ENST00000357517 KIF2CQ99661 725 aa12.73□□□□□ -0.37
PCDH1-202ENST00000357517 PYCARDQ9ULZ3 195 aa12.73□□□□□ -0.37
PCDH1-202ENST00000357517 RTF1Q92541 710 aaKnown RBP12.73□□□□□ -0.37
PCDH1-202ENST00000357517 FEZ1Q99689 392 aa12.73□□□□□ -0.37
PCDH1-202ENST00000357517 ANKRD45Q5TZF3 282 aa12.72□□□□□ -0.37
PCDH1-202ENST00000357517 CALCOCO1Q9P1Z2 691 aa12.72□□□□□ -0.37
PCDH1-202ENST00000357517 HCLS1P14317 486 aaPredicted RBP12.72□□□□□ -0.37
PCDH1-202ENST00000357517 NUCB2P80303 420 aa12.72□□□□□ -0.37
PCDH1-202ENST00000357517 NCBP1Q09161 790 aaKnown RBP12.72□□□□□ -0.37
PCDH1-202ENST00000357517 FKBP5Q13451 457 aaPredicted RBP12.72□□□□□ -0.37
PCDH1-202ENST00000357517 FANCD2Q9BXW9 1451 aa12.72□□□□□ -0.37
PCDH1-202ENST00000357517 CLGNO14967 610 aa12.71□□□□□ -0.37
PCDH1-202ENST00000357517 PLPPR3Q6T4P5 718 aa12.71□□□□□ -0.37
PCDH1-202ENST00000357517 HOMEZQ8IX15 550 aa12.71□□□□□ -0.37
PCDH1-202ENST00000357517 GABPB1Q06547 395 aaPredicted RBP12.71□□□□□ -0.38
PCDH1-202ENST00000357517 KIF21AQ7Z4S6 1674 aa12.71□□□□□ -0.38
PCDH1-202ENST00000357517 IBTKQ9P2D0 1353 aaPredicted RBP12.7□□□□□ -0.38
PCDH1-202ENST00000357517 TNNT1P13805 278 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms