RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 NUTM2GQ5VZR2 741 aa12.69□□□□□ -0.38
USP4-202ENST00000351842 PANK3Q9H999 370 aa12.69□□□□□ -0.38
USP4-202ENST00000351842 LRPPRCP42704 1394 aaKnown RBP12.68□□□□□ -0.38
USP4-202ENST00000351842 ESCO1Q5FWF5 840 aa12.68□□□□□ -0.38
USP4-202ENST00000351842 CCDC7Q96M83 1385 aa12.68□□□□□ -0.38
USP4-202ENST00000351842 GPRASP1Q5JY77 1395 aa12.67□□□□□ -0.38
USP4-202ENST00000351842 NRXN1Q9ULB1 1477 aa12.67□□□□□ -0.38
USP4-202ENST00000351842 TMEM94Q12767 1356 aa12.67□□□□□ -0.38
USP4-202ENST00000351842 ZBTB7CA1YPR0 619 aa12.67□□□□□ -0.38
USP4-202ENST00000351842 ADGRB1O14514 1584 aa12.66□□□□□ -0.38
USP4-202ENST00000351842 ATF3P18847 181 aa12.66□□□□□ -0.38
USP4-202ENST00000351842 MIER1Q8N108 512 aa12.66□□□□□ -0.38
USP4-202ENST00000351842 YTHDC1Q96MU7 727 aaKnown RBP12.66□□□□□ -0.38
USP4-202ENST00000351842 NGDNQ8NEJ9 315 aaKnown RBP12.66□□□□□ -0.38
USP4-202ENST00000351842 WASLO00401 505 aaPredicted RBP12.66□□□□□ -0.38
USP4-202ENST00000351842 NUDT16Q96DE0 195 aaKnown RBP12.66□□□□□ -0.38
USP4-202ENST00000351842 NRXN3Q9Y4C0 1643 aa12.65□□□□□ -0.38
USP4-202ENST00000351842 FOXO3O43524 673 aa12.65□□□□□ -0.38
USP4-202ENST00000351842 ORAI2Q96SN7 254 aa12.65□□□□□ -0.38
USP4-202ENST00000351842 ABCC11Q96J66 1382 aa12.64□□□□□ -0.39
USP4-202ENST00000351842 DMRT2Q9Y5R5 561 aa12.64□□□□□ -0.39
USP4-202ENST00000351842 NEURL4Q96JN8 1562 aa12.63□□□□□ -0.39
USP4-202ENST00000351842 FBLN1P23142 703 aa12.63□□□□□ -0.39
USP4-202ENST00000351842 CDCA8Q53HL2 280 aa12.63□□□□□ -0.39
USP4-202ENST00000351842 ZNF142P52746 1687 aaPredicted RBP12.63□□□□□ -0.39
USP4-202ENST00000351842 PPM1GO15355 546 aaPredicted RBP12.62□□□□□ -0.39
USP4-202ENST00000351842 KNSTRNQ9Y448 316 aa12.62□□□□□ -0.39
USP4-202ENST00000351842 SETBP1Q9Y6X0 1596 aa12.61□□□□□ -0.39
USP4-202ENST00000351842 PRR36Q9H6K5 1346 aa12.61□□□□□ -0.39
USP4-202ENST00000351842 GGNBP2Q9H3C7 697 aa12.61□□□□□ -0.39
USP4-202ENST00000351842 ANP32CO43423 234 aa12.6□□□□□ -0.39
USP4-202ENST00000351842 ZRANB1Q9UGI0 708 aa12.6□□□□□ -0.39
USP4-202ENST00000351842 CCDC61Q9Y6R9 512 aa12.59□□□□□ -0.39
USP4-202ENST00000351842 STRCQ7RTU9 1775 aa12.59□□□□□ -0.39
USP4-202ENST00000351842 POLR1AO95602 1720 aaPredicted RBP12.59□□□□□ -0.39
USP4-202ENST00000351842 C19orf44Q9H6X5 657 aa12.59□□□□□ -0.39
USP4-202ENST00000351842 PSME1Q06323 249 aa12.58□□□□□ -0.39
USP4-202ENST00000351842 QRICH2Q9H0J4 1663 aa12.58□□□□□ -0.4
USP4-202ENST00000351842 MED14O60244 1454 aa12.57□□□□□ -0.4
USP4-202ENST00000351842 UBAP1LF5GYI3 381 aa12.57□□□□□ -0.4
USP4-202ENST00000351842 HDGFL2Q7Z4V5 671 aaPredicted RBP12.57□□□□□ -0.4
USP4-202ENST00000351842 CARD14Q9BXL6 1004 aa12.57□□□□□ -0.4
USP4-202ENST00000351842 MSH6P52701 1360 aa12.57□□□□□ -0.4
USP4-202ENST00000351842 ACEP12821 1306 aa12.57□□□□□ -0.4
USP4-202ENST00000351842 ARHGEF28Q8N1W1 1705 aaKnown RBP12.57□□□□□ -0.4
USP4-202ENST00000351842 KDM5AP29375 1690 aaKnown RBP12.56□□□□□ -0.4
USP4-202ENST00000351842 PPIP5K1Q6PFW1 1433 aa12.56□□□□□ -0.4
USP4-202ENST00000351842 TERF2IPQ9NYB0 399 aa12.56□□□□□ -0.4
USP4-202ENST00000351842 LAMC1P11047 1609 aa12.55□□□□□ -0.4
USP4-202ENST00000351842 NME9Q86XW9 330 aa12.55□□□□□ -0.4
USP4-202ENST00000351842 PHF8Q9UPP1 1060 aa12.55□□□□□ -0.4
USP4-202ENST00000351842 TULP4Q9NRJ4 1543 aa12.55□□□□□ -0.4
USP4-202ENST00000351842 KIAA1210Q9ULL0 1709 aa12.54□□□□□ -0.4
USP4-202ENST00000351842 CADPS2Q86UW7 1296 aa12.54□□□□□ -0.4
USP4-202ENST00000351842 SLAIN2Q9P270 581 aa12.54□□□□□ -0.4
USP4-202ENST00000351842 SETD1AO15047 1707 aaKnown RBP12.54□□□□□ -0.4
USP4-202ENST00000351842 KTN1Q86UP2 1357 aaKnown RBP12.53□□□□□ -0.4
USP4-202ENST00000351842 NSD3Q9BZ95 1437 aa12.53□□□□□ -0.4
USP4-202ENST00000351842 CABLES1Q8TDN4 633 aa12.53□□□□□ -0.4
USP4-202ENST00000351842 A0A1W2PP64 1363 aa12.53□□□□□ -0.4
USP4-202ENST00000351842 PIK3R4Q99570 1358 aa12.53□□□□□ -0.4
USP4-202ENST00000351842 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.52□□□□□ -0.4
USP4-202ENST00000351842 HAP1P54257 671 aaPredicted RBP12.52□□□□□ -0.41
USP4-202ENST00000351842 CCDC184Q52MB2 194 aa12.52□□□□□ -0.41
USP4-202ENST00000351842 FAM9BQ8IZU0 186 aa12.52□□□□□ -0.41
USP4-202ENST00000351842 ABTB2Q8N961 1025 aa12.52□□□□□ -0.41
USP4-202ENST00000351842 MORC1Q86VD1 984 aa12.52□□□□□ -0.41
USP4-202ENST00000351842 FAM135BQ49AJ0 1406 aa12.52□□□□□ -0.41
USP4-202ENST00000351842 ATAD2Q6PL18 1390 aa12.51□□□□□ -0.41
USP4-202ENST00000351842 NLRP6P59044 892 aa12.51□□□□□ -0.41
USP4-202ENST00000351842 SALL2Q9Y467 1007 aaPredicted RBP12.51□□□□□ -0.41
USP4-202ENST00000351842 STRCP1A6NGW2 1772 aa12.5□□□□□ -0.41
USP4-202ENST00000351842 SLC24A1O60721 1099 aa12.5□□□□□ -0.41
USP4-202ENST00000351842 PTCH1Q13635 1447 aa12.5□□□□□ -0.41
USP4-202ENST00000351842 CHD2O14647 1828 aaKnown RBP12.5□□□□□ -0.41
USP4-202ENST00000351842 TECPR2O15040 1411 aa12.5□□□□□ -0.41
USP4-202ENST00000351842 MRS2Q9HD23 443 aa12.5□□□□□ -0.41
USP4-202ENST00000351842 ADGRL3Q9HAR2 1447 aa12.49□□□□□ -0.41
USP4-202ENST00000351842 RRS1Q15050 365 aaKnown RBP12.49□□□□□ -0.41
USP4-202ENST00000351842 KRT28Q7Z3Y7 464 aa12.49□□□□□ -0.41
USP4-202ENST00000351842 LTV1Q96GA3 475 aaPredicted RBP12.49□□□□□ -0.41
USP4-202ENST00000351842 SIRT1Q96EB6 747 aa12.48□□□□□ -0.41
USP4-202ENST00000351842 PRKRIP1Q9H875 184 aaPredicted RBP12.48□□□□□ -0.41
USP4-202ENST00000351842 LRRC7Q96NW7 1537 aa12.48□□□□□ -0.41
USP4-202ENST00000351842 DIP2AQ14689 1571 aa12.48□□□□□ -0.41
USP4-202ENST00000351842 CPS1P31327 1500 aa12.47□□□□□ -0.41
USP4-202ENST00000351842 CGNL1Q0VF96 1302 aa12.47□□□□□ -0.41
USP4-202ENST00000351842 NUTM2BA6NNL0 878 aaPredicted RBP12.47□□□□□ -0.41
USP4-202ENST00000351842 NUTM2EB1AL46 878 aaPredicted RBP12.47□□□□□ -0.41
USP4-202ENST00000351842 BRINP3Q76B58 766 aa12.47□□□□□ -0.41
USP4-202ENST00000351842 NUTM2AQ8IVF1 878 aaPredicted RBP12.47□□□□□ -0.41
USP4-202ENST00000351842 RGPD8O14715 1765 aaPredicted RBP12.47□□□□□ -0.41
USP4-202ENST00000351842 SBNO2Q9Y2G9 1366 aa12.47□□□□□ -0.41
USP4-202ENST00000351842 PER1O15534 1290 aaPredicted RBP12.47□□□□□ -0.41
USP4-202ENST00000351842 ZC3H6P61129 1189 aaKnown RBP12.47□□□□□ -0.41
USP4-202ENST00000351842 FYB1O15117 783 aa12.46□□□□□ -0.41
USP4-202ENST00000351842 ATP7BP35670 1465 aa12.46□□□□□ -0.42
USP4-202ENST00000351842 DLC1Q96QB1 1528 aa12.45□□□□□ -0.42
USP4-202ENST00000351842 XRN1Q8IZH2 1706 aaKnown RBP12.45□□□□□ -0.42
USP4-202ENST00000351842 NALCNQ8IZF0 1738 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 130.3 ms