RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 SAFB2Q14151 953 aaKnown RBP eCLIP20.3■□□□□ 0.84
UPF3B-202ENST00000345865 FBXO31Q5XUX0 539 aaPredicted RBP20.3■□□□□ 0.84
UPF3B-202ENST00000345865 USP32Q8NFA0 1604 aa20.29■□□□□ 0.84
UPF3B-202ENST00000345865 EVC2Q86UK5 1308 aa20.29■□□□□ 0.84
UPF3B-202ENST00000345865 CABP2Q9NPB3 220 aa20.28■□□□□ 0.84
UPF3B-202ENST00000345865 FAM69CQ0P6D2 419 aa20.28■□□□□ 0.84
UPF3B-202ENST00000345865 PUS7Q96PZ0 661 aaKnown RBP20.27■□□□□ 0.84
UPF3B-202ENST00000345865 STK26Q9P289 416 aa20.27■□□□□ 0.84
UPF3B-202ENST00000345865 SKAP1Q86WV1 359 aa20.26■□□□□ 0.83
UPF3B-202ENST00000345865 RIMBP3CA6NJZ7 1639 aa20.25■□□□□ 0.83
UPF3B-202ENST00000345865 RIMBP3BA6NNM3 1639 aa20.25■□□□□ 0.83
UPF3B-202ENST00000345865 RIMBP3Q9UFD9 1639 aa20.25■□□□□ 0.83
UPF3B-202ENST00000345865 DIP2BQ9P265 1576 aa20.25■□□□□ 0.83
UPF3B-202ENST00000345865 NKTRP30414 1462 aaKnown RBP20.25■□□□□ 0.83
UPF3B-202ENST00000345865 TSPOAP1O95153 1857 aa20.25■□□□□ 0.83
UPF3B-202ENST00000345865 ANKRD36BQ8N2N9 1353 aa20.25■□□□□ 0.83
UPF3B-202ENST00000345865 CGNL1Q0VF96 1302 aa20.25■□□□□ 0.83
UPF3B-202ENST00000345865 TCERG1O14776 1098 aaKnown RBP20.25■□□□□ 0.83
UPF3B-202ENST00000345865 MTHFSP49914 203 aa20.24■□□□□ 0.83
UPF3B-202ENST00000345865 E9PSI1 815 aa20.23■□□□□ 0.83
UPF3B-202ENST00000345865 WWC1Q8IX03 1113 aa20.23■□□□□ 0.83
UPF3B-202ENST00000345865 PTPRMP28827 1452 aa20.23■□□□□ 0.83
UPF3B-202ENST00000345865 BCAR3O75815 825 aa20.22■□□□□ 0.83
UPF3B-202ENST00000345865 ERICH6Q7L0X2 663 aa20.21■□□□□ 0.83
UPF3B-202ENST00000345865 KDM2BQ8NHM5 1336 aa20.21■□□□□ 0.83
UPF3B-202ENST00000345865 NGEFQ8N5V2 710 aa20.2■□□□□ 0.82
UPF3B-202ENST00000345865 A0A1W2PP64 1363 aa20.19■□□□□ 0.82
UPF3B-202ENST00000345865 PAK3O75914 559 aaPredicted RBP20.19■□□□□ 0.82
UPF3B-202ENST00000345865 RRP7AQ9Y3A4 280 aaKnown RBP20.19■□□□□ 0.82
UPF3B-202ENST00000345865 PDE4AP27815 886 aa20.19■□□□□ 0.82
UPF3B-202ENST00000345865 IQSEC2Q5JU85 1478 aa20.18■□□□□ 0.82
UPF3B-202ENST00000345865 YTHDC2Q9H6S0 1430 aaKnown RBP20.18■□□□□ 0.82
UPF3B-202ENST00000345865 NEUROD2Q15784 382 aa20.18■□□□□ 0.82
UPF3B-202ENST00000345865 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.18■□□□□ 0.82
UPF3B-202ENST00000345865 RUNDC1Q96C34 613 aa20.18■□□□□ 0.82
UPF3B-202ENST00000345865 PRAM1Q96QH2 718 aa20.18■□□□□ 0.82
UPF3B-202ENST00000345865 SRPK2P78362 688 aaKnown RBP20.18■□□□□ 0.82
UPF3B-202ENST00000345865 TCP11L2Q8N4U5 519 aa20.18■□□□□ 0.82
UPF3B-202ENST00000345865 MINK1Q8N4C8 1332 aaPredicted RBP20.17■□□□□ 0.82
UPF3B-202ENST00000345865 BACH2Q9BYV9 841 aa20.17■□□□□ 0.82
UPF3B-202ENST00000345865 MS4A1P11836 297 aa20.16■□□□□ 0.82
UPF3B-202ENST00000345865 ALKQ9UM73 1620 aa20.16■□□□□ 0.82
UPF3B-202ENST00000345865 NSD2O96028 1365 aa20.16■□□□□ 0.82
UPF3B-202ENST00000345865 PHF23Q9BUL5 403 aaPredicted RBP20.16■□□□□ 0.82
UPF3B-202ENST00000345865 NOP58Q9Y2X3 529 aaKnown RBP20.16■□□□□ 0.82
UPF3B-202ENST00000345865 ANP32AP39687 249 aaKnown RBP20.15■□□□□ 0.82
UPF3B-202ENST00000345865 ABCC11Q96J66 1382 aa20.15■□□□□ 0.82
UPF3B-202ENST00000345865 IPO9Q96P70 1041 aaKnown RBP20.15■□□□□ 0.82
UPF3B-202ENST00000345865 CD163L1Q9NR16 1453 aa20.14■□□□□ 0.81
UPF3B-202ENST00000345865 CLTCQ00610 1675 aaKnown RBP20.14■□□□□ 0.81
UPF3B-202ENST00000345865 REREQ9P2R6 1566 aa20.14■□□□□ 0.81
UPF3B-202ENST00000345865 AGLP35573 1532 aa20.13■□□□□ 0.81
UPF3B-202ENST00000345865 CFAP53Q96M91 514 aa20.13■□□□□ 0.81
UPF3B-202ENST00000345865 GGNBP2Q9H3C7 697 aa20.13■□□□□ 0.81
UPF3B-202ENST00000345865 POGKQ9P215 609 aa20.13■□□□□ 0.81
UPF3B-202ENST00000345865 NINLQ9Y2I6 1382 aa20.12■□□□□ 0.81
UPF3B-202ENST00000345865 CENPQQ7L2Z9 268 aaPredicted RBP20.11■□□□□ 0.81
UPF3B-202ENST00000345865 STAG3Q9UJ98 1225 aa20.11■□□□□ 0.81
UPF3B-202ENST00000345865 ATAD2Q6PL18 1390 aa20.1■□□□□ 0.81
UPF3B-202ENST00000345865 FYB1O15117 783 aa20.1■□□□□ 0.81
UPF3B-202ENST00000345865 A2ML1A8K2U0 1454 aa20.09■□□□□ 0.81
UPF3B-202ENST00000345865 NLRP1Q9C000 1473 aa20.09■□□□□ 0.81
UPF3B-202ENST00000345865 U2AF1L5P0DN76 240 aaPredicted RBP20.09■□□□□ 0.81
UPF3B-202ENST00000345865 U2AF1Q01081 240 aaKnown RBP eCLIP20.09■□□□□ 0.81
UPF3B-202ENST00000345865 MLECQ14165 292 aa20.09■□□□□ 0.81
UPF3B-202ENST00000345865 NPM2Q86SE8 214 aaKnown RBP20.09■□□□□ 0.81
UPF3B-202ENST00000345865 ARHGEF40Q8TER5 1519 aa20.09■□□□□ 0.81
UPF3B-202ENST00000345865 CDK19Q9BWU1 502 aa20.08■□□□□ 0.81
UPF3B-202ENST00000345865 PPP6R1Q9UPN7 881 aa20.08■□□□□ 0.81
UPF3B-202ENST00000345865 SPATA31D1Q6ZQQ2 1576 aa20.08■□□□□ 0.8
UPF3B-202ENST00000345865 WDR63Q8IWG1 891 aa20.07■□□□□ 0.8
UPF3B-202ENST00000345865 CCDC27Q2M243 656 aa20.07■□□□□ 0.8
UPF3B-202ENST00000345865 TERF2IPQ9NYB0 399 aa20.06■□□□□ 0.8
UPF3B-202ENST00000345865 COL3A1P02461 1466 aaPredicted RBP20.06■□□□□ 0.8
UPF3B-202ENST00000345865 WAPLQ7Z5K2 1190 aa20.05■□□□□ 0.8
UPF3B-202ENST00000345865 ADGRB2O60241 1585 aa20.05■□□□□ 0.8
UPF3B-202ENST00000345865 SETD1AO15047 1707 aaKnown RBP20.05■□□□□ 0.8
UPF3B-202ENST00000345865 ANKRD26Q9UPS8 1709 aa20.05■□□□□ 0.8
UPF3B-202ENST00000345865 CABP1Q9NZU7 370 aa20.05■□□□□ 0.8
UPF3B-202ENST00000345865 RARSP54136 660 aaKnown RBP20.04■□□□□ 0.8
UPF3B-202ENST00000345865 PDE3AQ14432 1141 aa20.04■□□□□ 0.8
UPF3B-202ENST00000345865 PANK1Q8TE04 598 aa20.04■□□□□ 0.8
UPF3B-202ENST00000345865 RIMS2Q9UQ26 1411 aa20.04■□□□□ 0.8
UPF3B-202ENST00000345865 PLEKHF1Q96S99 279 aa20.03■□□□□ 0.8
UPF3B-202ENST00000345865 ZBTB47Q9UFB7 747 aaPredicted RBP20.03■□□□□ 0.8
UPF3B-202ENST00000345865 MED14O60244 1454 aa20.03■□□□□ 0.8
UPF3B-202ENST00000345865 IGHDP01880 384 aa20.02■□□□□ 0.79
UPF3B-202ENST00000345865 COG6Q9Y2V7 657 aa20.02■□□□□ 0.79
UPF3B-202ENST00000345865 U2SURPO15042 1029 aaKnown RBP20.01■□□□□ 0.79
UPF3B-202ENST00000345865 FRAT1Q92837 279 aaPredicted RBP20.01■□□□□ 0.79
UPF3B-202ENST00000345865 TNNQ9UQP3 1299 aa20.01■□□□□ 0.79
UPF3B-202ENST00000345865 NCBP3Q53F19 620 aaKnown RBP20■□□□□ 0.79
UPF3B-202ENST00000345865 DLC1Q96QB1 1528 aa20■□□□□ 0.79
UPF3B-202ENST00000345865 HDGFL2Q7Z4V5 671 aaPredicted RBP19.99■□□□□ 0.79
UPF3B-202ENST00000345865 BCL2L13Q9BXK5 485 aa19.99■□□□□ 0.79
UPF3B-202ENST00000345865 NRXN3Q9Y4C0 1643 aa19.99■□□□□ 0.79
UPF3B-202ENST00000345865 KIF13AQ9H1H9 1805 aa19.99■□□□□ 0.79
UPF3B-202ENST00000345865 CANXP27824 592 aaKnown RBP19.98■□□□□ 0.79
UPF3B-202ENST00000345865 KIF20BQ96Q89 1820 aa19.98■□□□□ 0.79
UPF3B-202ENST00000345865 RLBP1P12271 317 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms