RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 MAGI1Q96QZ7 1491 aaPredicted RBP15.35■□□□□ 0.05
SNRNP48-201ENST00000342415 FAM43AQ8N2R8 423 aa15.35■□□□□ 0.05
SNRNP48-201ENST00000342415 LRPPRCP42704 1394 aaKnown RBP15.35■□□□□ 0.05
SNRNP48-201ENST00000342415 CAVIN1Q6NZI2 390 aaKnown RBP15.35■□□□□ 0.05
SNRNP48-201ENST00000342415 RLBP1P12271 317 aa15.35■□□□□ 0.05
SNRNP48-201ENST00000342415 DRC7Q8IY82 874 aa15.35■□□□□ 0.05
SNRNP48-201ENST00000342415 TRHP20396 242 aaPredicted RBP15.34■□□□□ 0.05
SNRNP48-201ENST00000342415 NSD3Q9BZ95 1437 aa15.34■□□□□ 0.05
SNRNP48-201ENST00000342415 HMMRO75330 724 aa15.34■□□□□ 0.05
SNRNP48-201ENST00000342415 PRAM1Q96QH2 718 aa15.34■□□□□ 0.05
SNRNP48-201ENST00000342415 CHMP3Q9Y3E7 222 aa15.34■□□□□ 0.05
SNRNP48-201ENST00000342415 HAP1P54257 671 aaPredicted RBP15.34■□□□□ 0.05
SNRNP48-201ENST00000342415 COG3Q96JB2 828 aa15.33■□□□□ 0.05
SNRNP48-201ENST00000342415 ANO2Q9NQ90 1003 aa15.33■□□□□ 0.04
SNRNP48-201ENST00000342415 NKTRP30414 1462 aaKnown RBP15.33■□□□□ 0.04
SNRNP48-201ENST00000342415 NUP153P49790 1475 aaKnown RBP15.33■□□□□ 0.04
SNRNP48-201ENST00000342415 TEX14Q8IWB6 1497 aa15.33■□□□□ 0.04
SNRNP48-201ENST00000342415 SKOR2Q2VWA4 1001 aaPredicted RBP15.33■□□□□ 0.04
SNRNP48-201ENST00000342415 WDR63Q8IWG1 891 aa15.33■□□□□ 0.04
SNRNP48-201ENST00000342415 CABP1Q9NZU7 370 aa15.33■□□□□ 0.04
SNRNP48-201ENST00000342415 PANK2Q9BZ23 570 aa15.32■□□□□ 0.04
SNRNP48-201ENST00000342415 KDM6BO15054 1643 aa15.32■□□□□ 0.04
SNRNP48-201ENST00000342415 NASPP49321 788 aaPredicted RBP15.32■□□□□ 0.04
SNRNP48-201ENST00000342415 MAGI3Q5TCQ9 1506 aa15.32■□□□□ 0.04
SNRNP48-201ENST00000342415 PZPP20742 1482 aa15.32■□□□□ 0.04
SNRNP48-201ENST00000342415 MRC2Q9UBG0 1479 aa15.32■□□□□ 0.04
SNRNP48-201ENST00000342415 SPATA31E1Q6ZUB1 1445 aa15.32■□□□□ 0.04
SNRNP48-201ENST00000342415 TMPOP42166 694 aaKnown RBP15.32■□□□□ 0.04
SNRNP48-201ENST00000342415 PTMSP20962 102 aa15.31■□□□□ 0.04
SNRNP48-201ENST00000342415 KIAA2012Q0VF49 1180 aa15.31■□□□□ 0.04
SNRNP48-201ENST00000342415 ZNF428Q96B54 188 aa15.31■□□□□ 0.04
SNRNP48-201ENST00000342415 AMPHP49418 695 aa15.31■□□□□ 0.04
SNRNP48-201ENST00000342415 GRPEL1Q9HAV7 217 aa15.31■□□□□ 0.04
SNRNP48-201ENST00000342415 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.31■□□□□ 0.04
SNRNP48-201ENST00000342415 STAC3Q96MF2 364 aa15.31■□□□□ 0.04
SNRNP48-201ENST00000342415 TRIM27P14373 513 aa15.3■□□□□ 0.04
SNRNP48-201ENST00000342415 LMOD3Q0VAK6 560 aa15.3■□□□□ 0.04
SNRNP48-201ENST00000342415 PRPF40AO75400 957 aaKnown RBP15.3■□□□□ 0.04
SNRNP48-201ENST00000342415 CHD1LQ86WJ1 897 aa15.3■□□□□ 0.04
SNRNP48-201ENST00000342415 RALGAPBQ86X10 1494 aa15.3■□□□□ 0.04
SNRNP48-201ENST00000342415 CCDC141Q6ZP82 1450 aa15.3■□□□□ 0.04
SNRNP48-201ENST00000342415 DCTN1Q14203 1278 aa15.29■□□□□ 0.04
SNRNP48-201ENST00000342415 TWISTNBQ3B726 338 aaPredicted RBP15.29■□□□□ 0.04
SNRNP48-201ENST00000342415 NGDNQ8NEJ9 315 aaKnown RBP15.29■□□□□ 0.04
SNRNP48-201ENST00000342415 API5Q9BZZ5 524 aaKnown RBP15.29■□□□□ 0.04
SNRNP48-201ENST00000342415 BCL11BQ9C0K0 894 aaPredicted RBP15.29■□□□□ 0.04
SNRNP48-201ENST00000342415 CCDC9Q9Y3X0 531 aaKnown RBP15.29■□□□□ 0.04
SNRNP48-201ENST00000342415 TCOF1Q13428 1488 aaKnown RBP15.29■□□□□ 0.04
SNRNP48-201ENST00000342415 IFT140Q96RY7 1462 aa15.29■□□□□ 0.04
SNRNP48-201ENST00000342415 EIF2S2P20042 333 aaKnown RBP15.29■□□□□ 0.04
SNRNP48-201ENST00000342415 ZRSR1Q15695 479 aaKnown RBP15.29■□□□□ 0.04
SNRNP48-201ENST00000342415 CFAP44Q96MT7 982 aa15.29■□□□□ 0.04
SNRNP48-201ENST00000342415 GNAI1P63096 354 aa15.28■□□□□ 0.04
SNRNP48-201ENST00000342415 RBM10P98175 930 aaKnown RBP15.28■□□□□ 0.04
SNRNP48-201ENST00000342415 R3HCC1Q9Y3T6 440 aaKnown RBP15.28■□□□□ 0.04
SNRNP48-201ENST00000342415 CDC45O75419 566 aa15.28■□□□□ 0.04
SNRNP48-201ENST00000342415 CARD14Q9BXL6 1004 aa15.28■□□□□ 0.04
SNRNP48-201ENST00000342415 NEK4P51957 841 aa15.27■□□□□ 0.04
SNRNP48-201ENST00000342415 FKBP5Q13451 457 aaPredicted RBP15.27■□□□□ 0.04
SNRNP48-201ENST00000342415 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.27■□□□□ 0.04
SNRNP48-201ENST00000342415 RAPGEF3O95398 923 aa15.27■□□□□ 0.03
SNRNP48-201ENST00000342415 PRAG1Q86YV5 1406 aa15.27■□□□□ 0.03
SNRNP48-201ENST00000342415 AAMPQ13685 434 aa15.27■□□□□ 0.03
SNRNP48-201ENST00000342415 GRIN2AQ12879 1464 aa15.26■□□□□ 0.03
SNRNP48-201ENST00000342415 TBC1D32Q96NH3 1257 aa15.26■□□□□ 0.03
SNRNP48-201ENST00000342415 REC8O95072 547 aa15.26■□□□□ 0.03
SNRNP48-201ENST00000342415 RRS1Q15050 365 aaKnown RBP15.26■□□□□ 0.03
SNRNP48-201ENST00000342415 NUTM2GQ5VZR2 741 aa15.26■□□□□ 0.03
SNRNP48-201ENST00000342415 ESPNB1AK53 854 aa15.26■□□□□ 0.03
SNRNP48-201ENST00000342415 INTS3Q68E01 1043 aaKnown RBP15.25■□□□□ 0.03
SNRNP48-201ENST00000342415 SYAP1Q96A49 352 aaPredicted RBP15.25■□□□□ 0.03
SNRNP48-201ENST00000342415 CHAF1AQ13111 956 aaPredicted RBP15.25■□□□□ 0.03
SNRNP48-201ENST00000342415 RBM42Q9BTD8 480 aaKnown RBP15.24■□□□□ 0.03
SNRNP48-201ENST00000342415 MIS18AQ9NYP9 233 aa15.24■□□□□ 0.03
SNRNP48-201ENST00000342415 K7ELQ4 463 aaPredicted RBP15.23■□□□□ 0.03
SNRNP48-201ENST00000342415 HDGFP51858 240 aaKnown RBP15.23■□□□□ 0.03
SNRNP48-201ENST00000342415 OSCARQ8IYS5 282 aa15.23■□□□□ 0.03
SNRNP48-201ENST00000342415 CDK19Q9BWU1 502 aa15.23■□□□□ 0.03
SNRNP48-201ENST00000342415 SMARCA5O60264 1052 aaPredicted RBP15.23■□□□□ 0.03
SNRNP48-201ENST00000342415 XRCC6P12956 609 aaKnown RBP eCLIP15.23■□□□□ 0.03
SNRNP48-201ENST00000342415 NUCB2P80303 420 aa15.23■□□□□ 0.03
SNRNP48-201ENST00000342415 GPRASP1Q5JY77 1395 aa15.23■□□□□ 0.03
SNRNP48-201ENST00000342415 KDM2BQ8NHM5 1336 aa15.23■□□□□ 0.03
SNRNP48-201ENST00000342415 TNPO1Q92973 898 aaKnown RBP15.22■□□□□ 0.03
SNRNP48-201ENST00000342415 SSFA2P28290 1259 aa15.22■□□□□ 0.03
SNRNP48-201ENST00000342415 TSPYL4Q9UJ04 414 aa15.22■□□□□ 0.03
SNRNP48-201ENST00000342415 SULT6B1Q6IMI4 303 aa15.21■□□□□ 0.03
SNRNP48-201ENST00000342415 CTTNBP2Q8WZ74 1663 aa15.21■□□□□ 0.03
SNRNP48-201ENST00000342415 TXNDC2Q86VQ3 553 aa15.21■□□□□ 0.03
SNRNP48-201ENST00000342415 ATP10BO94823 1461 aa15.21■□□□□ 0.03
SNRNP48-201ENST00000342415 SLC4A2P04920 1241 aa15.21■□□□□ 0.02
SNRNP48-201ENST00000342415 WAPLQ7Z5K2 1190 aa15.21■□□□□ 0.02
SNRNP48-201ENST00000342415 CCDC27Q2M243 656 aa15.2■□□□□ 0.02
SNRNP48-201ENST00000342415 LAMC3Q9Y6N6 1575 aa15.2■□□□□ 0.02
SNRNP48-201ENST00000342415 GCC1Q96CN9 775 aa15.19■□□□□ 0.02
SNRNP48-201ENST00000342415 ZNF330Q9Y3S2 320 aaPredicted RBP15.19■□□□□ 0.02
SNRNP48-201ENST00000342415 MAP4K4O95819 1239 aaPredicted RBP15.19■□□□□ 0.02
SNRNP48-201ENST00000342415 VPS37CA5D8V6 355 aaPredicted RBP15.18■□□□□ 0.02
SNRNP48-201ENST00000342415 FAM69CQ0P6D2 419 aa15.18■□□□□ 0.02
SNRNP48-201ENST00000342415 EMILIN1Q9Y6C2 1016 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms