RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 CABP2Q9NPB3 220 aa10.53□□□□□ -0.72
RTN3-202ENST00000339997 TEFQ10587 303 aa10.53□□□□□ -0.72
RTN3-202ENST00000339997 PNISRQ8TF01 805 aaKnown RBP10.53□□□□□ -0.72
RTN3-202ENST00000339997 MTMR7Q9Y216 660 aa10.53□□□□□ -0.72
RTN3-202ENST00000339997 CALRP27797 417 aaKnown RBP10.52□□□□□ -0.72
RTN3-202ENST00000339997 GTF2E1P29083 439 aaPredicted RBP10.52□□□□□ -0.73
RTN3-202ENST00000339997 EIF3AQ14152 1382 aaKnown RBP10.52□□□□□ -0.73
RTN3-202ENST00000339997 KDM5BQ9UGL1 1544 aa10.52□□□□□ -0.73
RTN3-202ENST00000339997 COG3Q96JB2 828 aa10.52□□□□□ -0.73
RTN3-202ENST00000339997 KIF3AQ9Y496 699 aa10.52□□□□□ -0.73
RTN3-202ENST00000339997 TSR1Q2NL82 804 aaKnown RBP10.52□□□□□ -0.73
RTN3-202ENST00000339997 HMGXB3Q12766 1538 aa10.52□□□□□ -0.73
RTN3-202ENST00000339997 MCM4P33991 863 aa10.51□□□□□ -0.73
RTN3-202ENST00000339997 TRERF1Q96PN7 1200 aa10.51□□□□□ -0.73
RTN3-202ENST00000339997 NEUROD6Q96NK8 337 aa10.51□□□□□ -0.73
RTN3-202ENST00000339997 CEP89Q96ST8 783 aa10.51□□□□□ -0.73
RTN3-202ENST00000339997 UQCRHLA0A096LP55 91 aa10.51□□□□□ -0.73
RTN3-202ENST00000339997 UQCRHP07919 91 aa10.51□□□□□ -0.73
RTN3-202ENST00000339997 STK3Q13188 491 aa10.51□□□□□ -0.73
RTN3-202ENST00000339997 ERICH4A6NGS2 130 aa10.5□□□□□ -0.73
RTN3-202ENST00000339997 CNTLNQ9NXG0 1405 aa10.5□□□□□ -0.73
RTN3-202ENST00000339997 CDC45O75419 566 aa10.5□□□□□ -0.73
RTN3-202ENST00000339997 DDX54Q8TDD1 881 aaKnown RBP10.5□□□□□ -0.73
RTN3-202ENST00000339997 HDGFP51858 240 aaKnown RBP10.5□□□□□ -0.73
RTN3-202ENST00000339997 PODXL2Q9NZ53 605 aa10.5□□□□□ -0.73
RTN3-202ENST00000339997 BRPF1P55201 1214 aaPredicted RBP10.5□□□□□ -0.73
RTN3-202ENST00000339997 NOB1Q9ULX3 412 aaKnown RBP10.5□□□□□ -0.73
RTN3-202ENST00000339997 PPP2R1AP30153 589 aa10.49□□□□□ -0.73
RTN3-202ENST00000339997 API5Q9BZZ5 524 aaKnown RBP10.49□□□□□ -0.73
RTN3-202ENST00000339997 CCDC39Q9UFE4 941 aa10.49□□□□□ -0.73
RTN3-202ENST00000339997 TSPYL4Q9UJ04 414 aa10.49□□□□□ -0.73
RTN3-202ENST00000339997 SURF6O75683 361 aaKnown RBP10.49□□□□□ -0.73
RTN3-202ENST00000339997 XPCQ01831 940 aaPredicted RBP10.49□□□□□ -0.73
RTN3-202ENST00000339997 AKAP17AQ02040 695 aaKnown RBP10.49□□□□□ -0.73
RTN3-202ENST00000339997 CFAP70Q5T0N1 1121 aa10.49□□□□□ -0.73
RTN3-202ENST00000339997 CCDC73Q6ZRK6 1079 aa10.49□□□□□ -0.73
RTN3-202ENST00000339997 CHMP4CQ96CF2 233 aa10.49□□□□□ -0.73
RTN3-202ENST00000339997 SLC12A5Q9H2X9 1139 aa10.49□□□□□ -0.73
RTN3-202ENST00000339997 NAP1L1P55209 391 aaKnown RBP10.48□□□□□ -0.73
RTN3-202ENST00000339997 GPS2Q13227 327 aa10.48□□□□□ -0.73
RTN3-202ENST00000339997 TEX35Q5T0J7 233 aa10.48□□□□□ -0.73
RTN3-202ENST00000339997 CBX1P83916 185 aa10.48□□□□□ -0.73
RTN3-202ENST00000339997 SAMD1Q6SPF0 538 aaPredicted RBP10.48□□□□□ -0.73
RTN3-202ENST00000339997 SMC2O95347 1197 aa10.48□□□□□ -0.73
RTN3-202ENST00000339997 RUFY2Q8WXA3 655 aa10.48□□□□□ -0.73
RTN3-202ENST00000339997 ZBTB9Q96C00 473 aa10.47□□□□□ -0.73
RTN3-202ENST00000339997 ZHX1Q9UKY1 873 aaPredicted RBP10.47□□□□□ -0.73
RTN3-202ENST00000339997 ARAP1Q96P48 1450 aa10.47□□□□□ -0.73
RTN3-202ENST00000339997 PRXQ9BXM0 1461 aa10.47□□□□□ -0.73
RTN3-202ENST00000339997 SYCE3A1L190 88 aa10.47□□□□□ -0.73
RTN3-202ENST00000339997 FILIP1Q7Z7B0 1213 aa10.47□□□□□ -0.73
RTN3-202ENST00000339997 LARP6Q9BRS8 491 aaKnown RBP10.47□□□□□ -0.73
RTN3-202ENST00000339997 TPM1P09493 284 aa10.47□□□□□ -0.73
RTN3-202ENST00000339997 NFXL1Q6ZNB6 911 aa10.47□□□□□ -0.73
RTN3-202ENST00000339997 JPH4Q96JJ6 628 aa10.47□□□□□ -0.73
RTN3-202ENST00000339997 EVC2Q86UK5 1308 aa10.47□□□□□ -0.73
RTN3-202ENST00000339997 G3BP1Q13283 466 aaKnown RBP eCLIP10.47□□□□□ -0.73
RTN3-202ENST00000339997 TSPY26PQ9H489 355 aa10.47□□□□□ -0.73
RTN3-202ENST00000339997 IPO7O95373 1038 aaKnown RBP10.46□□□□□ -0.73
RTN3-202ENST00000339997 FYB1O15117 783 aa10.46□□□□□ -0.73
RTN3-202ENST00000339997 FERMT3Q86UX7 667 aa10.46□□□□□ -0.73
RTN3-202ENST00000339997 UPF3BQ9BZI7 483 aaKnown RBP10.46□□□□□ -0.73
RTN3-202ENST00000339997 PRKAR2BP31323 418 aa10.46□□□□□ -0.74
RTN3-202ENST00000339997 SETQ01105 290 aaPredicted RBP10.46□□□□□ -0.74
RTN3-202ENST00000339997 WASHC4Q2M389 1173 aa10.46□□□□□ -0.74
RTN3-202ENST00000339997 ERCC6Q03468 1493 aa10.46□□□□□ -0.74
RTN3-202ENST00000339997 DHX16O60231 1041 aaKnown RBP10.46□□□□□ -0.74
RTN3-202ENST00000339997 SYNE3Q6ZMZ3 975 aa10.46□□□□□ -0.74
RTN3-202ENST00000339997 TRIM29Q14134 588 aa10.45□□□□□ -0.74
RTN3-202ENST00000339997 CCDC173Q0VFZ6 552 aa10.45□□□□□ -0.74
RTN3-202ENST00000339997 SYTL4Q96C24 671 aaPredicted RBP10.45□□□□□ -0.74
RTN3-202ENST00000339997 THUMPD2Q9BTF0 503 aaKnown RBP10.45□□□□□ -0.74
RTN3-202ENST00000339997 CPLX2Q6PUV4 134 aaKnown RBP10.45□□□□□ -0.74
RTN3-202ENST00000339997 GDPD2Q9HCC8 539 aa10.45□□□□□ -0.74
RTN3-202ENST00000339997 TPM2P07951 284 aa10.45□□□□□ -0.74
RTN3-202ENST00000339997 NEXNQ0ZGT2 675 aa10.45□□□□□ -0.74
RTN3-202ENST00000339997 IL1RAPL2Q9NP60 686 aa10.45□□□□□ -0.74
RTN3-202ENST00000339997 HDAC5Q9UQL6 1122 aa10.45□□□□□ -0.74
RTN3-202ENST00000339997 IBSPP21815 317 aaPredicted RBP10.44□□□□□ -0.74
RTN3-202ENST00000339997 HSP90B2PQ58FF3 399 aa10.44□□□□□ -0.74
RTN3-202ENST00000339997 DENND4BO75064 1496 aaPredicted RBP10.44□□□□□ -0.74
RTN3-202ENST00000339997 FAM177BA6PVY3 158 aa10.44□□□□□ -0.74
RTN3-202ENST00000339997 CAMK4Q16566 473 aa10.44□□□□□ -0.74
RTN3-202ENST00000339997 DNAJC2Q99543 621 aaKnown RBP10.44□□□□□ -0.74
RTN3-202ENST00000339997 C1orf141Q5JVX7 400 aa10.44□□□□□ -0.74
RTN3-202ENST00000339997 RNF20Q5VTR2 975 aa10.44□□□□□ -0.74
RTN3-202ENST00000339997 FSD1Q9BTV5 496 aa10.44□□□□□ -0.74
RTN3-202ENST00000339997 UBTFL1P0CB47 393 aaPredicted RBP10.43□□□□□ -0.74
RTN3-202ENST00000339997 PANK2Q9BZ23 570 aa10.43□□□□□ -0.74
RTN3-202ENST00000339997 SIL1Q9H173 461 aa10.43□□□□□ -0.74
RTN3-202ENST00000339997 H0YHG0 523 aa10.43□□□□□ -0.74
RTN3-202ENST00000339997 GNAI1P63096 354 aa10.43□□□□□ -0.74
RTN3-202ENST00000339997 K7ELQ4 463 aaPredicted RBP10.43□□□□□ -0.74
RTN3-202ENST00000339997 ZMYND15Q9H091 742 aa10.43□□□□□ -0.74
RTN3-202ENST00000339997 ARGLU1Q9NWB6 273 aaPredicted RBP10.43□□□□□ -0.74
RTN3-202ENST00000339997 PPFIA3O75145 1194 aa10.42□□□□□ -0.74
RTN3-202ENST00000339997 TRDNQ13061 729 aa10.42□□□□□ -0.74
RTN3-202ENST00000339997 SLC4A2P04920 1241 aa10.42□□□□□ -0.74
RTN3-202ENST00000339997 TWISTNBQ3B726 338 aaPredicted RBP10.42□□□□□ -0.74
RTN3-202ENST00000339997 TMX4Q9H1E5 349 aaPredicted RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms