RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 SLIT3O75094 1523 aa7.9□□□□□ -1.15
CSDE1-202ENST00000339438 LTN1O94822 1766 aa7.9□□□□□ -1.15
CSDE1-202ENST00000339438 ABCC6O95255 1503 aa7.89□□□□□ -1.15
CSDE1-202ENST00000339438 CCDC136Q96JN2 1154 aa7.89□□□□□ -1.15
CSDE1-202ENST00000339438 ZNF831Q5JPB2 1677 aa7.89□□□□□ -1.15
CSDE1-202ENST00000339438 LTKP29376 864 aa7.89□□□□□ -1.15
CSDE1-202ENST00000339438 GLI3P10071 1580 aa7.88□□□□□ -1.15
CSDE1-202ENST00000339438 FBXO31Q5XUX0 539 aaPredicted RBP7.88□□□□□ -1.15
CSDE1-202ENST00000339438 FAM135BQ49AJ0 1406 aa7.88□□□□□ -1.15
CSDE1-202ENST00000339438 LRP6O75581 1613 aa7.87□□□□□ -1.15
CSDE1-202ENST00000339438 RGPD2P0DJD1 1756 aa7.87□□□□□ -1.15
CSDE1-202ENST00000339438 HNRNPUL2Q1KMD3 747 aaKnown RBP7.87□□□□□ -1.15
CSDE1-202ENST00000339438 PAPPAQ13219 1627 aa7.87□□□□□ -1.15
CSDE1-202ENST00000339438 RIMS2Q9UQ26 1411 aa7.86□□□□□ -1.15
CSDE1-202ENST00000339438 RALGAPBQ86X10 1494 aa7.86□□□□□ -1.15
CSDE1-202ENST00000339438 PKD1L3Q7Z443 1732 aa7.86□□□□□ -1.15
CSDE1-202ENST00000339438 IL27Q8NEV9 243 aa7.86□□□□□ -1.15
CSDE1-202ENST00000339438 NFAT5O94916 1531 aa7.86□□□□□ -1.15
CSDE1-202ENST00000339438 NUP155O75694 1391 aa7.86□□□□□ -1.15
CSDE1-202ENST00000339438 METP08581 1390 aa7.86□□□□□ -1.15
CSDE1-202ENST00000339438 ATP7BP35670 1465 aa7.85□□□□□ -1.15
CSDE1-202ENST00000339438 CEBPAP49715 358 aaPredicted RBP7.84□□□□□ -1.15
CSDE1-202ENST00000339438 TUBGCP6Q96RT7 1819 aa7.84□□□□□ -1.15
CSDE1-202ENST00000339438 PAK3O75914 559 aaPredicted RBP7.83□□□□□ -1.16
CSDE1-202ENST00000339438 PPP1R15AO75807 674 aaPredicted RBP7.83□□□□□ -1.16
CSDE1-202ENST00000339438 CASZ1Q86V15 1759 aa7.83□□□□□ -1.16
CSDE1-202ENST00000339438 TOGARAM1Q9Y4F4 1720 aa7.82□□□□□ -1.16
CSDE1-202ENST00000339438 IDI1Q13907 227 aa7.82□□□□□ -1.16
CSDE1-202ENST00000339438 NCAPD2Q15021 1401 aa7.81□□□□□ -1.16
CSDE1-202ENST00000339438 LRRC37A3O60309 1634 aa7.81□□□□□ -1.16
CSDE1-202ENST00000339438 LY75O60449 1722 aa7.81□□□□□ -1.16
CSDE1-202ENST00000339438 ADGRL3Q9HAR2 1447 aa7.81□□□□□ -1.16
CSDE1-202ENST00000339438 PKD2Q13563 968 aa7.8□□□□□ -1.16
CSDE1-202ENST00000339438 ILDR1Q86SU0 546 aaPredicted RBP7.8□□□□□ -1.16
CSDE1-202ENST00000339438 MAP2P11137 1827 aaKnown RBP7.8□□□□□ -1.16
CSDE1-202ENST00000339438 COL14A1Q05707 1796 aaKnown RBP7.8□□□□□ -1.16
CSDE1-202ENST00000339438 WASHC2AQ641Q2 1341 aa7.8□□□□□ -1.16
CSDE1-202ENST00000339438 ROBO2Q9HCK4 1378 aa7.79□□□□□ -1.16
CSDE1-202ENST00000339438 SIRT1Q96EB6 747 aa7.78□□□□□ -1.16
CSDE1-202ENST00000339438 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.78□□□□□ -1.16
CSDE1-202ENST00000339438 KIAA1551Q9HCM1 1747 aa7.78□□□□□ -1.16
CSDE1-202ENST00000339438 SBNO2Q9Y2G9 1366 aa7.78□□□□□ -1.16
CSDE1-202ENST00000339438 NUP188Q5SRE5 1749 aa7.78□□□□□ -1.16
CSDE1-202ENST00000339438 UBR2Q8IWV8 1755 aa7.78□□□□□ -1.16
CSDE1-202ENST00000339438 ABCC11Q96J66 1382 aa7.78□□□□□ -1.16
CSDE1-202ENST00000339438 CCER2I3L3R5 266 aa7.78□□□□□ -1.16
CSDE1-202ENST00000339438 C11orf95C9JLR9 678 aaPredicted RBP7.77□□□□□ -1.17
CSDE1-202ENST00000339438 NOP58Q9Y2X3 529 aaKnown RBP7.77□□□□□ -1.17
CSDE1-202ENST00000339438 RRP7BPQ9NSQ0 103 aa7.76□□□□□ -1.17
CSDE1-202ENST00000339438 TAF1LQ8IZX4 1826 aa7.76□□□□□ -1.17
CSDE1-202ENST00000339438 TRIM52Q96A61 297 aa7.76□□□□□ -1.17
CSDE1-202ENST00000339438 SLC52A1Q9NWF4 448 aa7.76□□□□□ -1.17
CSDE1-202ENST00000339438 WASHC2CQ9Y4E1 1318 aa7.75□□□□□ -1.17
CSDE1-202ENST00000339438 CPSF1Q10570 1443 aaKnown RBP7.75□□□□□ -1.17
CSDE1-202ENST00000339438 COL5A3P25940 1745 aaPredicted RBP7.75□□□□□ -1.17
CSDE1-202ENST00000339438 KIF3BO15066 747 aa7.75□□□□□ -1.17
CSDE1-202ENST00000339438 NEFLP07196 543 aa7.75□□□□□ -1.17
CSDE1-202ENST00000339438 LRPPRCP42704 1394 aaKnown RBP7.75□□□□□ -1.17
CSDE1-202ENST00000339438 NBR1Q14596 966 aa7.74□□□□□ -1.17
CSDE1-202ENST00000339438 YTHDC2Q9H6S0 1430 aaKnown RBP7.74□□□□□ -1.17
CSDE1-202ENST00000339438 POLR3AO14802 1390 aaPredicted RBP7.74□□□□□ -1.17
CSDE1-202ENST00000339438 ANKARQ7Z5J8 1434 aa7.73□□□□□ -1.17
CSDE1-202ENST00000339438 RPGRIP1LQ68CZ1 1315 aa7.73□□□□□ -1.17
CSDE1-202ENST00000339438 NCKAP5LQ9HCH0 1330 aa7.73□□□□□ -1.17
CSDE1-202ENST00000339438 C1orf167Q5SNV9 1468 aa7.73□□□□□ -1.17
CSDE1-202ENST00000339438 RTN4Q9NQC3 1192 aaKnown RBP7.72□□□□□ -1.17
CSDE1-202ENST00000339438 TBX22Q9Y458 520 aa7.72□□□□□ -1.17
CSDE1-202ENST00000339438 NHSQ6T4R5 1651 aa7.72□□□□□ -1.17
CSDE1-202ENST00000339438 DDX10Q13206 875 aaKnown RBP7.71□□□□□ -1.17
CSDE1-202ENST00000339438 ZNF335Q9H4Z2 1342 aaPredicted RBP7.71□□□□□ -1.17
CSDE1-202ENST00000339438 CDK12Q9NYV4 1490 aaPredicted RBP7.71□□□□□ -1.18
CSDE1-202ENST00000339438 PLEKHH1Q9ULM0 1364 aa7.71□□□□□ -1.18
CSDE1-202ENST00000339438 MPHOSPH9Q99550 1183 aa7.71□□□□□ -1.18
CSDE1-202ENST00000339438 SLIT2O94813 1529 aa7.71□□□□□ -1.18
CSDE1-202ENST00000339438 SMG6Q86US8 1419 aaKnown RBP7.71□□□□□ -1.18
CSDE1-202ENST00000339438 ITGB4P16144 1822 aa7.7□□□□□ -1.18
CSDE1-202ENST00000339438 IRX6P78412 446 aaPredicted RBP7.7□□□□□ -1.18
CSDE1-202ENST00000339438 FBXO41Q8TF61 875 aa7.7□□□□□ -1.18
CSDE1-202ENST00000339438 SLC24A1O60721 1099 aa7.7□□□□□ -1.18
CSDE1-202ENST00000339438 PKNOX2Q96KN3 472 aa7.7□□□□□ -1.18
CSDE1-202ENST00000339438 ADGRF5Q8IZF2 1346 aa7.7□□□□□ -1.18
CSDE1-202ENST00000339438 KIF13BQ9NQT8 1826 aa7.69□□□□□ -1.18
CSDE1-202ENST00000339438 C14orf93Q9H972 538 aaKnown RBP7.69□□□□□ -1.18
CSDE1-202ENST00000339438 PPP4R2Q9NY27 417 aa7.69□□□□□ -1.18
CSDE1-202ENST00000339438 ZNF646O15015 1829 aaPredicted RBP7.68□□□□□ -1.18
CSDE1-202ENST00000339438 IPO9Q96P70 1041 aaKnown RBP7.68□□□□□ -1.18
CSDE1-202ENST00000339438 HSPA2P54652 639 aa7.68□□□□□ -1.18
CSDE1-202ENST00000339438 N4BP2Q86UW6 1770 aaPredicted RBP7.67□□□□□ -1.18
CSDE1-202ENST00000339438 SCN11AQ9UI33 1791 aa7.67□□□□□ -1.18
CSDE1-202ENST00000339438 RGS17Q9UGC6 210 aaPredicted RBP7.67□□□□□ -1.18
CSDE1-202ENST00000339438 DLG5Q8TDM6 1919 aa7.66□□□□□ -1.18
CSDE1-202ENST00000339438 COL3A1P02461 1466 aaPredicted RBP7.66□□□□□ -1.18
CSDE1-202ENST00000339438 KANK1Q14678 1352 aa7.66□□□□□ -1.18
CSDE1-202ENST00000339438 KCNA6P17658 529 aa7.66□□□□□ -1.18
CSDE1-202ENST00000339438 BRCA1P38398 1863 aaKnown RBP7.65□□□□□ -1.18
CSDE1-202ENST00000339438 EIF5BO60841 1220 aaKnown RBP7.65□□□□□ -1.18
CSDE1-202ENST00000339438 TSPY4P0CV99 314 aa7.65□□□□□ -1.18
CSDE1-202ENST00000339438 TSPY10P0CW01 314 aa7.65□□□□□ -1.18
CSDE1-202ENST00000339438 LRP5O75197 1615 aa7.65□□□□□ -1.18
CSDE1-202ENST00000339438 BCL9LQ86UU0 1499 aa7.65□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms