RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 IFT57Q9NWB7 429 aa15.28■□□□□ 0.04
SDC3-201ENST00000336798 VGFO15240 615 aaPredicted RBP15.28■□□□□ 0.04
SDC3-201ENST00000336798 SAFBQ15424 915 aaKnown RBP eCLIP15.28■□□□□ 0.04
SDC3-201ENST00000336798 DZIP1LQ8IYY4 767 aaKnown RBP15.28■□□□□ 0.04
SDC3-201ENST00000336798 PAF1Q8N7H5 531 aa15.28■□□□□ 0.04
SDC3-201ENST00000336798 RALYLQ86SE5 291 aaKnown RBP15.27■□□□□ 0.04
SDC3-201ENST00000336798 DDX19BQ9UMR2 479 aa15.27■□□□□ 0.03
SDC3-201ENST00000336798 RAPGEF4Q8WZA2 1011 aa15.27■□□□□ 0.03
SDC3-201ENST00000336798 DNAJC2Q99543 621 aaKnown RBP15.26■□□□□ 0.03
SDC3-201ENST00000336798 OFD1O75665 1012 aa15.25■□□□□ 0.03
SDC3-201ENST00000336798 ATF3P18847 181 aa15.25■□□□□ 0.03
SDC3-201ENST00000336798 CCDC73Q6ZRK6 1079 aa15.25■□□□□ 0.03
SDC3-201ENST00000336798 CAGE1Q8TC20 777 aa15.24■□□□□ 0.03
SDC3-201ENST00000336798 TEX35Q5T0J7 233 aa15.24■□□□□ 0.03
SDC3-201ENST00000336798 RBM42Q9BTD8 480 aaKnown RBP15.24■□□□□ 0.03
SDC3-201ENST00000336798 MNS1Q8NEH6 495 aa15.23■□□□□ 0.03
SDC3-201ENST00000336798 ATP2B2Q01814 1243 aa15.23■□□□□ 0.03
SDC3-201ENST00000336798 INTS3Q68E01 1043 aaKnown RBP15.23■□□□□ 0.03
SDC3-201ENST00000336798 API5Q9BZZ5 524 aaKnown RBP15.23■□□□□ 0.03
SDC3-201ENST00000336798 BRPF1P55201 1214 aaPredicted RBP15.23■□□□□ 0.03
SDC3-201ENST00000336798 CCAR1Q8IX12 1150 aaKnown RBP15.23■□□□□ 0.03
SDC3-201ENST00000336798 GGNBP2Q9H3C7 697 aa15.23■□□□□ 0.03
SDC3-201ENST00000336798 PANK1Q8TE04 598 aa15.22■□□□□ 0.03
SDC3-201ENST00000336798 AK7Q96M32 723 aa15.22■□□□□ 0.03
SDC3-201ENST00000336798 FANCIQ9NVI1 1328 aa15.22■□□□□ 0.03
SDC3-201ENST00000336798 BAZ1AQ9NRL2 1556 aaPredicted RBP15.22■□□□□ 0.03
SDC3-201ENST00000336798 CCDC18Q5T9S5 1454 aa15.22■□□□□ 0.03
SDC3-201ENST00000336798 RNF214Q8ND24 703 aa15.22■□□□□ 0.03
SDC3-201ENST00000336798 JPH4Q96JJ6 628 aa15.22■□□□□ 0.03
SDC3-201ENST00000336798 CABP2Q9NPB3 220 aa15.22■□□□□ 0.03
SDC3-201ENST00000336798 OLFM4Q6UX06 510 aa15.21■□□□□ 0.03
SDC3-201ENST00000336798 ERC2O15083 957 aa15.21■□□□□ 0.03
SDC3-201ENST00000336798 CEBPZQ03701 1054 aaKnown RBP15.21■□□□□ 0.03
SDC3-201ENST00000336798 BRMS1Q9HCU9 246 aa15.21■□□□□ 0.03
SDC3-201ENST00000336798 FSD1Q9BTV5 496 aa15.21■□□□□ 0.03
SDC3-201ENST00000336798 STRN4Q9NRL3 753 aa15.21■□□□□ 0.03
SDC3-201ENST00000336798 USP47Q96K76 1375 aa15.2■□□□□ 0.02
SDC3-201ENST00000336798 IBSPP21815 317 aaPredicted RBP15.2■□□□□ 0.02
SDC3-201ENST00000336798 FMNL2Q96PY5 1086 aa15.2■□□□□ 0.02
SDC3-201ENST00000336798 UBTFL1P0CB47 393 aaPredicted RBP15.2■□□□□ 0.02
SDC3-201ENST00000336798 UACAQ9BZF9 1416 aa15.19■□□□□ 0.02
SDC3-201ENST00000336798 DHX37Q8IY37 1157 aaKnown RBP15.19■□□□□ 0.02
SDC3-201ENST00000336798 CCDC88BA6NC98 1476 aa15.19■□□□□ 0.02
SDC3-201ENST00000336798 SDF4Q9BRK5 362 aa15.18■□□□□ 0.02
SDC3-201ENST00000336798 PRKRIP1Q9H875 184 aaPredicted RBP15.18■□□□□ 0.02
SDC3-201ENST00000336798 DCAF8L1A6NGE4 600 aa15.18■□□□□ 0.02
SDC3-201ENST00000336798 MAPK8IP2Q13387 824 aaPredicted RBP15.18■□□□□ 0.02
SDC3-201ENST00000336798 CHMP5Q9NZZ3 219 aa15.17■□□□□ 0.02
SDC3-201ENST00000336798 BRPF3Q9ULD4 1205 aa15.17■□□□□ 0.02
SDC3-201ENST00000336798 ROCK1Q13464 1354 aa15.17■□□□□ 0.02
SDC3-201ENST00000336798 RSPH4AQ5TD94 716 aa15.17■□□□□ 0.02
SDC3-201ENST00000336798 C1orf115Q9H7X2 142 aa15.17■□□□□ 0.02
SDC3-201ENST00000336798 SMC2O95347 1197 aa15.17■□□□□ 0.02
SDC3-201ENST00000336798 RUNDC1Q96C34 613 aa15.17■□□□□ 0.02
SDC3-201ENST00000336798 CDK5RAP3Q96JB5 506 aa15.17■□□□□ 0.02
SDC3-201ENST00000336798 TMEM132EQ6IEE7 984 aa15.17■□□□□ 0.02
SDC3-201ENST00000336798 NUTM2BA6NNL0 878 aaPredicted RBP15.17■□□□□ 0.02
SDC3-201ENST00000336798 NUTM2EB1AL46 878 aaPredicted RBP15.17■□□□□ 0.02
SDC3-201ENST00000336798 NUTM2AQ8IVF1 878 aaPredicted RBP15.17■□□□□ 0.02
SDC3-201ENST00000336798 OSCARQ8IYS5 282 aa15.16■□□□□ 0.02
SDC3-201ENST00000336798 C22orf23Q9BZE7 217 aa15.16■□□□□ 0.02
SDC3-201ENST00000336798 KRT18P05783 430 aaKnown RBP15.16■□□□□ 0.02
SDC3-201ENST00000336798 MAP4K4O95819 1239 aaPredicted RBP15.16■□□□□ 0.02
SDC3-201ENST00000336798 XBP1P17861 261 aa15.16■□□□□ 0.02
SDC3-201ENST00000336798 NLRP6P59044 892 aa15.16■□□□□ 0.02
SDC3-201ENST00000336798 MAP7D2Q96T17 732 aa15.15■□□□□ 0.02
SDC3-201ENST00000336798 WWC2Q6AWC2 1192 aa15.15■□□□□ 0.02
SDC3-201ENST00000336798 ZHX3Q9H4I2 956 aa15.15■□□□□ 0.02
SDC3-201ENST00000336798 CDR1P51861 262 aa15.15■□□□□ 0.02
SDC3-201ENST00000336798 GNAI1P63096 354 aa15.15■□□□□ 0.02
SDC3-201ENST00000336798 HSP90AB4PQ58FF6 505 aa15.15■□□□□ 0.02
SDC3-201ENST00000336798 STK3Q13188 491 aa15.14■□□□□ 0.01
SDC3-201ENST00000336798 KIF6Q6ZMV9 814 aa15.14■□□□□ 0.01
SDC3-201ENST00000336798 CCDC173Q0VFZ6 552 aa15.14■□□□□ 0.01
SDC3-201ENST00000336798 SURF6O75683 361 aaKnown RBP15.14■□□□□ 0.01
SDC3-201ENST00000336798 CNTROBQ8N137 903 aa15.14■□□□□ 0.01
SDC3-201ENST00000336798 TBC1D2BQ9UPU7 963 aa15.14■□□□□ 0.01
SDC3-201ENST00000336798 ESCO1Q5FWF5 840 aa15.14■□□□□ 0.01
SDC3-201ENST00000336798 HSP90B2PQ58FF3 399 aa15.13■□□□□ 0.01
SDC3-201ENST00000336798 CNNM1Q9NRU3 951 aa15.13■□□□□ 0.01
SDC3-201ENST00000336798 RBM5P52756 815 aaKnown RBP eCLIP15.13■□□□□ 0.01
SDC3-201ENST00000336798 FAM69CQ0P6D2 419 aa15.13■□□□□ 0.01
SDC3-201ENST00000336798 TTC39AQ5SRH9 613 aa15.13■□□□□ 0.01
SDC3-201ENST00000336798 PLCD4Q9BRC7 762 aa15.13■□□□□ 0.01
SDC3-201ENST00000336798 SIL1Q9H173 461 aa15.13■□□□□ 0.01
SDC3-201ENST00000336798 ARGLU1Q9NWB6 273 aaPredicted RBP15.13■□□□□ 0.01
SDC3-201ENST00000336798 ABTB2Q8N961 1025 aa15.12■□□□□ 0.01
SDC3-201ENST00000336798 NINLQ9Y2I6 1382 aa15.12■□□□□ 0.01
SDC3-201ENST00000336798 NAT10Q9H0A0 1025 aaKnown RBP15.12■□□□□ 0.01
SDC3-201ENST00000336798 NUCB2P80303 420 aa15.12■□□□□ 0.01
SDC3-201ENST00000336798 ANKRD62A6NC57 917 aa15.11■□□□□ 0.01
SDC3-201ENST00000336798 SART3Q15020 963 aaKnown RBP15.11■□□□□ 0.01
SDC3-201ENST00000336798 TRIM5Q9C035 493 aa15.11■□□□□ 0.01
SDC3-201ENST00000336798 SPINK5Q9NQ38 1064 aaPredicted RBP15.11■□□□□ 0.01
SDC3-201ENST00000336798 SYCP1Q15431 976 aa15.11■□□□□ 0.01
SDC3-201ENST00000336798 MPNDQ8N594 471 aa15.11■□□□□ 0.01
SDC3-201ENST00000336798 FAM43AQ8N2R8 423 aa15.11■□□□□ 0.01
SDC3-201ENST00000336798 SPC24Q8NBT2 197 aa15.11■□□□□ 0.01
SDC3-201ENST00000336798 ZBED9Q6R2W3 1325 aa15.11■□□□□ 0.01
SDC3-201ENST00000336798 MAGEC2Q9UBF1 373 aaPredicted RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms