RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 PRKAR2AP13861 404 aaKnown RBP3.25□□□□□ -1.89
LINC00643-201ENST00000334389 ILDR2Q71H61 639 aa3.25□□□□□ -1.89
LINC00643-201ENST00000334389 DISP3Q9P2K9 1392 aa3.24□□□□□ -1.89
LINC00643-201ENST00000334389 DLEC1Q9Y238 1755 aa3.24□□□□□ -1.89
LINC00643-201ENST00000334389 BRD4O60885 1362 aaPredicted RBP3.24□□□□□ -1.89
LINC00643-201ENST00000334389 JCADQ9P266 1359 aa3.24□□□□□ -1.89
LINC00643-201ENST00000334389 TECPR2O15040 1411 aa3.24□□□□□ -1.89
LINC00643-201ENST00000334389 PXDNLA1KZ92 1463 aa3.24□□□□□ -1.89
LINC00643-201ENST00000334389 MYOM2P54296 1465 aa3.24□□□□□ -1.89
LINC00643-201ENST00000334389 VIRMAQ69YN4 1812 aaKnown RBP3.24□□□□□ -1.89
LINC00643-201ENST00000334389 KIAA1551Q9HCM1 1747 aa3.23□□□□□ -1.89
LINC00643-201ENST00000334389 RSPH4AQ5TD94 716 aa3.23□□□□□ -1.89
LINC00643-201ENST00000334389 RGS12O14924 1447 aa3.23□□□□□ -1.89
LINC00643-201ENST00000334389 IFFO2Q5TF58 517 aa3.23□□□□□ -1.89
LINC00643-201ENST00000334389 WDR90Q96KV7 1748 aa3.23□□□□□ -1.89
LINC00643-201ENST00000334389 MIA2Q96PC5 1412 aa3.23□□□□□ -1.89
LINC00643-201ENST00000334389 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.23□□□□□ -1.89
LINC00643-201ENST00000334389 PKD1L3Q7Z443 1732 aa3.22□□□□□ -1.89
LINC00643-201ENST00000334389 ATAD2Q6PL18 1390 aa3.22□□□□□ -1.89
LINC00643-201ENST00000334389 SCUBE2Q9NQ36 999 aa3.22□□□□□ -1.89
LINC00643-201ENST00000334389 LY75O60449 1722 aa3.22□□□□□ -1.89
LINC00643-201ENST00000334389 ACIN1Q9UKV3 1341 aaKnown RBP3.21□□□□□ -1.89
LINC00643-201ENST00000334389 CCDC141Q6ZP82 1450 aa3.21□□□□□ -1.9
LINC00643-201ENST00000334389 ARFGEF1Q9Y6D6 1849 aa3.21□□□□□ -1.9
LINC00643-201ENST00000334389 PLEKHG1Q9ULL1 1385 aa3.21□□□□□ -1.9
LINC00643-201ENST00000334389 SCAPERQ9BY12 1400 aa3.21□□□□□ -1.9
LINC00643-201ENST00000334389 SPDYE1Q8NFV5 336 aaPredicted RBP3.21□□□□□ -1.9
LINC00643-201ENST00000334389 C4AP0C0L4 1744 aa3.21□□□□□ -1.9
LINC00643-201ENST00000334389 C4BP0C0L5 1744 aa3.21□□□□□ -1.9
LINC00643-201ENST00000334389 ANKRD26Q9UPS8 1709 aa3.2□□□□□ -1.9
LINC00643-201ENST00000334389 SLC39A7Q92504 469 aa3.2□□□□□ -1.9
LINC00643-201ENST00000334389 DHX29Q7Z478 1369 aaKnown RBP3.2□□□□□ -1.9
LINC00643-201ENST00000334389 SLIT2O94813 1529 aa3.2□□□□□ -1.9
LINC00643-201ENST00000334389 C7P10643 843 aa3.2□□□□□ -1.9
LINC00643-201ENST00000334389 BLMP54132 1417 aaPredicted RBP3.2□□□□□ -1.9
LINC00643-201ENST00000334389 AKAP12Q02952 1782 aa3.2□□□□□ -1.9
LINC00643-201ENST00000334389 ARHGAP5Q13017 1502 aa3.19□□□□□ -1.9
LINC00643-201ENST00000334389 SSC5DA1L4H1 1573 aa3.19□□□□□ -1.9
LINC00643-201ENST00000334389 TMEM121BQ9BXQ6 578 aaPredicted RBP3.19□□□□□ -1.9
LINC00643-201ENST00000334389 BRCA1P38398 1863 aaKnown RBP3.19□□□□□ -1.9
LINC00643-201ENST00000334389 CLTCL1P53675 1640 aa3.19□□□□□ -1.9
LINC00643-201ENST00000334389 SLIT3O75094 1523 aa3.18□□□□□ -1.9
LINC00643-201ENST00000334389 HMGB2P26583 209 aaKnown RBP3.18□□□□□ -1.9
LINC00643-201ENST00000334389 ADGRB1O14514 1584 aa3.18□□□□□ -1.9
LINC00643-201ENST00000334389 PXDNQ92626 1479 aa3.17□□□□□ -1.9
LINC00643-201ENST00000334389 NRXN1Q9ULB1 1477 aa3.17□□□□□ -1.9
LINC00643-201ENST00000334389 ZNF772Q68DY9 489 aaPredicted RBP3.17□□□□□ -1.9
LINC00643-201ENST00000334389 TOM1O60784 492 aa3.17□□□□□ -1.9
LINC00643-201ENST00000334389 LTBP1Q14766 1721 aa3.17□□□□□ -1.9
LINC00643-201ENST00000334389 TNRQ92752 1358 aa3.17□□□□□ -1.9
LINC00643-201ENST00000334389 RGS20O76081 388 aa3.17□□□□□ -1.9
LINC00643-201ENST00000334389 ATP7BP35670 1465 aa3.16□□□□□ -1.9
LINC00643-201ENST00000334389 ZMYM3Q14202 1370 aa3.16□□□□□ -1.9
LINC00643-201ENST00000334389 MYO5BQ9ULV0 1848 aa3.16□□□□□ -1.9
LINC00643-201ENST00000334389 E9PCH4 1651 aa3.16□□□□□ -1.9
LINC00643-201ENST00000334389 ONECUT3O60422 494 aaPredicted RBP3.15□□□□□ -1.9
LINC00643-201ENST00000334389 FAM163AQ96GL9 167 aaPredicted RBP3.15□□□□□ -1.9
LINC00643-201ENST00000334389 MTUS2Q5JR59 1369 aa3.15□□□□□ -1.9
LINC00643-201ENST00000334389 COL18A1P39060 1754 aa3.15□□□□□ -1.9
LINC00643-201ENST00000334389 POTEB2H3BUK9 544 aa3.15□□□□□ -1.91
LINC00643-201ENST00000334389 ANKARQ7Z5J8 1434 aa3.15□□□□□ -1.91
LINC00643-201ENST00000334389 C5P01031 1676 aa3.15□□□□□ -1.91
LINC00643-201ENST00000334389 LRRC37A3O60309 1634 aa3.15□□□□□ -1.91
LINC00643-201ENST00000334389 ADCY9O60503 1353 aa3.15□□□□□ -1.91
LINC00643-201ENST00000334389 NSD3Q9BZ95 1437 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 NRXN2Q9P2S2 1712 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 SPATA31E1Q6ZUB1 1445 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 NRKQ7Z2Y5 1582 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 INSRP06213 1382 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 ADAMTSL1Q8N6G6 1762 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 SIRT1Q96EB6 747 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 TUBGCP6Q96RT7 1819 aa3.13□□□□□ -1.91
LINC00643-201ENST00000334389 ADGRL3Q9HAR2 1447 aa3.13□□□□□ -1.91
LINC00643-201ENST00000334389 RGS17Q9UGC6 210 aaPredicted RBP3.13□□□□□ -1.91
LINC00643-201ENST00000334389 CAPN2P17655 700 aa3.12□□□□□ -1.91
LINC00643-201ENST00000334389 SPDYE2BA6NHP3 402 aa3.12□□□□□ -1.91
LINC00643-201ENST00000334389 SPDYE6P0CI01 402 aa3.12□□□□□ -1.91
LINC00643-201ENST00000334389 CD44P16070 742 aaKnown RBP3.12□□□□□ -1.91
LINC00643-201ENST00000334389 SPDYE2Q495Y8 402 aa3.12□□□□□ -1.91
LINC00643-201ENST00000334389 DICER1Q9UPY3 1922 aaKnown RBP3.12□□□□□ -1.91
LINC00643-201ENST00000334389 SBNO1A3KN83 1393 aa3.11□□□□□ -1.91
LINC00643-201ENST00000334389 PTGER2P43116 358 aa3.11□□□□□ -1.91
LINC00643-201ENST00000334389 UPF1Q92900 1129 aaKnown RBP eCLIP3.11□□□□□ -1.91
LINC00643-201ENST00000334389 FAM9AQ8IZU1 332 aaPredicted RBP3.11□□□□□ -1.91
LINC00643-201ENST00000334389 SCN7AQ01118 1682 aa3.11□□□□□ -1.91
LINC00643-201ENST00000334389 TTBK1Q5TCY1 1321 aaPredicted RBP3.1□□□□□ -1.91
LINC00643-201ENST00000334389 EFCAB2Q5VUJ9 269 aa3.1□□□□□ -1.91
LINC00643-201ENST00000334389 TMEM2Q9UHN6 1383 aa3.1□□□□□ -1.91
LINC00643-201ENST00000334389 BCORQ6W2J9 1755 aa3.1□□□□□ -1.91
LINC00643-201ENST00000334389 ZNF646O15015 1829 aaPredicted RBP3.1□□□□□ -1.91
LINC00643-201ENST00000334389 RAPGEF3O95398 923 aa3.1□□□□□ -1.91
LINC00643-201ENST00000334389 ARIH1Q9Y4X5 557 aaPredicted RBP3.1□□□□□ -1.91
LINC00643-201ENST00000334389 KDM3BQ7LBC6 1761 aa3.1□□□□□ -1.91
LINC00643-201ENST00000334389 ROCK1Q13464 1354 aa3.09□□□□□ -1.91
LINC00643-201ENST00000334389 POLA2Q14181 598 aa3.09□□□□□ -1.91
LINC00643-201ENST00000334389 ADAMTS13Q76LX8 1427 aa3.09□□□□□ -1.91
LINC00643-201ENST00000334389 TAF1LQ8IZX4 1826 aa3.09□□□□□ -1.92
LINC00643-201ENST00000334389 ASTLQ6HA08 431 aaPredicted RBP3.09□□□□□ -1.92
LINC00643-201ENST00000334389 FNBP4Q8N3X1 1017 aaPredicted RBP3.09□□□□□ -1.92
LINC00643-201ENST00000334389 PNPLA6Q8IY17 1366 aa3.09□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms