RNA–Protein interactions for RNA: ENST00000330295.9

CTHRC1-201, Transcript of collagen triple helix repeat containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTHRC1, Length 1,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1-201ENST00000330295 SEPT12Q8IYM1 358 aa23.29■■□□□ 1.32
CTHRC1-201ENST00000330295 SLIT2O94813 1529 aa23.27■■□□□ 1.32
CTHRC1-201ENST00000330295 E9PCH4 1651 aa23.26■■□□□ 1.31
CTHRC1-201ENST00000330295 R3HDM1Q15032 1099 aaKnown RBP23.24■■□□□ 1.31
CTHRC1-201ENST00000330295 ANKRD50Q9ULJ7 1429 aa23.24■■□□□ 1.31
CTHRC1-201ENST00000330295 IQGAP3Q86VI3 1631 aa23.23■■□□□ 1.31
CTHRC1-201ENST00000330295 KRT27Q7Z3Y8 459 aa23.23■■□□□ 1.31
CTHRC1-201ENST00000330295 ADGRL2O95490 1459 aa23.23■■□□□ 1.31
CTHRC1-201ENST00000330295 IFFO2Q5TF58 517 aa23.22■■□□□ 1.31
CTHRC1-201ENST00000330295 NPHP3Q7Z494 1330 aa23.22■■□□□ 1.31
CTHRC1-201ENST00000330295 PXDNQ92626 1479 aa23.22■■□□□ 1.31
CTHRC1-201ENST00000330295 VPS8Q8N3P4 1428 aa23.21■■□□□ 1.31
CTHRC1-201ENST00000330295 ONECUT3O60422 494 aaPredicted RBP23.18■■□□□ 1.3
CTHRC1-201ENST00000330295 EN1Q05925 392 aaPredicted RBP23.17■■□□□ 1.3
CTHRC1-201ENST00000330295 VPS72Q15906 364 aa23.16■■□□□ 1.3
CTHRC1-201ENST00000330295 XPCQ01831 940 aaPredicted RBP23.15■■□□□ 1.3
CTHRC1-201ENST00000330295 USP32Q8NFA0 1604 aa23.14■■□□□ 1.29
CTHRC1-201ENST00000330295 ROBO2Q9HCK4 1378 aa23.14■■□□□ 1.29
CTHRC1-201ENST00000330295 RGPD1P0DJD0 1748 aa23.13■■□□□ 1.29
CTHRC1-201ENST00000330295 ESCO1Q5FWF5 840 aa23.13■■□□□ 1.29
CTHRC1-201ENST00000330295 POTEDQ86YR6 584 aa23.13■■□□□ 1.29
CTHRC1-201ENST00000330295 FOXO3O43524 673 aa23.12■■□□□ 1.29
CTHRC1-201ENST00000330295 ZNF326Q5BKZ1 582 aaKnown RBP23.11■■□□□ 1.29
CTHRC1-201ENST00000330295 CCDC9Q9Y3X0 531 aaKnown RBP23.1■■□□□ 1.29
CTHRC1-201ENST00000330295 DISP2A7MBM2 1401 aa23.09■■□□□ 1.29
CTHRC1-201ENST00000330295 NWD2Q9ULI1 1742 aa23.08■■□□□ 1.29
CTHRC1-201ENST00000330295 LRPPRCP42704 1394 aaKnown RBP23.08■■□□□ 1.29
CTHRC1-201ENST00000330295 PLCH1Q4KWH8 1693 aa23.07■■□□□ 1.28
CTHRC1-201ENST00000330295 A0A0G2JS52 829 aa23.06■■□□□ 1.28
CTHRC1-201ENST00000330295 MYT1Q01538 1121 aa23.06■■□□□ 1.28
CTHRC1-201ENST00000330295 PRAG1Q86YV5 1406 aa23.06■■□□□ 1.28
CTHRC1-201ENST00000330295 CDC42BPGQ6DT37 1551 aa23.06■■□□□ 1.28
CTHRC1-201ENST00000330295 NEXMIFQ5QGS0 1516 aa23.05■■□□□ 1.28
CTHRC1-201ENST00000330295 DCAF8L1A6NGE4 600 aa23.05■■□□□ 1.28
CTHRC1-201ENST00000330295 HFM1A2PYH4 1435 aa23.05■■□□□ 1.28
CTHRC1-201ENST00000330295 SENP3-EIF4A1A0A087X0R7 540 aa23.04■■□□□ 1.28
CTHRC1-201ENST00000330295 TNS1Q9HBL0 1735 aaKnown RBP23.04■■□□□ 1.28
CTHRC1-201ENST00000330295 SPATA31A3Q5VYP0 1347 aa23.04■■□□□ 1.28
CTHRC1-201ENST00000330295 EZH2Q15910 746 aaKnown RBP23.03■■□□□ 1.28
CTHRC1-201ENST00000330295 ADRA2BP18089 450 aa23.01■■□□□ 1.27
CTHRC1-201ENST00000330295 PIAS4Q8N2W9 510 aaPredicted RBP23.01■■□□□ 1.27
CTHRC1-201ENST00000330295 HAP1P54257 671 aaPredicted RBP23■■□□□ 1.27
CTHRC1-201ENST00000330295 FAM98CQ17RN3 349 aaKnown RBP23■■□□□ 1.27
CTHRC1-201ENST00000330295 MSH5O43196 834 aa22.99■■□□□ 1.27
CTHRC1-201ENST00000330295 FAM182BQ5T319 152 aa22.98■■□□□ 1.27
CTHRC1-201ENST00000330295 ZNF784Q8NCA9 323 aaPredicted RBP22.98■■□□□ 1.27
CTHRC1-201ENST00000330295 CAMKK2Q96RR4 588 aa22.97■■□□□ 1.27
CTHRC1-201ENST00000330295 NINLQ9Y2I6 1382 aa22.97■■□□□ 1.27
CTHRC1-201ENST00000330295 ADGRB2O60241 1585 aa22.97■■□□□ 1.27
CTHRC1-201ENST00000330295 PPP1R1BQ9UD71 204 aaPredicted RBP22.96■■□□□ 1.27
CTHRC1-201ENST00000330295 CCDC144AA2RUR9 1427 aa22.95■■□□□ 1.26
CTHRC1-201ENST00000330295 NUP155O75694 1391 aa22.95■■□□□ 1.26
CTHRC1-201ENST00000330295 CABLES1Q8TDN4 633 aa22.94■■□□□ 1.26
CTHRC1-201ENST00000330295 NUTM2FA1L443 756 aa22.93■■□□□ 1.26
CTHRC1-201ENST00000330295 CAMTA1Q9Y6Y1 1673 aa22.93■■□□□ 1.26
CTHRC1-201ENST00000330295 PARD3Q8TEW0 1356 aa22.92■■□□□ 1.26
CTHRC1-201ENST00000330295 NRAPQ86VF7 1730 aa22.92■■□□□ 1.26
CTHRC1-201ENST00000330295 ABCA3Q99758 1704 aa22.92■■□□□ 1.26
CTHRC1-201ENST00000330295 FAM50AQ14320 339 aaKnown RBP22.92■■□□□ 1.26
CTHRC1-201ENST00000330295 NAIPQ13075 1403 aa22.91■■□□□ 1.26
CTHRC1-201ENST00000330295 KIF1AQ12756 1690 aa22.91■■□□□ 1.26
CTHRC1-201ENST00000330295 SPON1Q9HCB6 807 aa22.91■■□□□ 1.26
CTHRC1-201ENST00000330295 TNS3Q68CZ2 1445 aa22.91■■□□□ 1.26
CTHRC1-201ENST00000330295 C1QTNF8P60827 252 aa22.9■■□□□ 1.26
CTHRC1-201ENST00000330295 KRT28Q7Z3Y7 464 aa22.9■■□□□ 1.26
CTHRC1-201ENST00000330295 FAM83GA6ND36 823 aa22.89■■□□□ 1.25
CTHRC1-201ENST00000330295 PLEKHG5O94827 1062 aa22.89■■□□□ 1.25
CTHRC1-201ENST00000330295 RREB1Q92766 1687 aa22.89■■□□□ 1.25
CTHRC1-201ENST00000330295 CLTCL1P53675 1640 aa22.89■■□□□ 1.25
CTHRC1-201ENST00000330295 VGFO15240 615 aaPredicted RBP22.87■■□□□ 1.25
CTHRC1-201ENST00000330295 NUP188Q5SRE5 1749 aa22.87■■□□□ 1.25
CTHRC1-201ENST00000330295 KCNQ2O43526 872 aa22.86■■□□□ 1.25
CTHRC1-201ENST00000330295 TRIM37O94972 964 aa22.86■■□□□ 1.25
CTHRC1-201ENST00000330295 APLP2Q06481 763 aa22.86■■□□□ 1.25
CTHRC1-201ENST00000330295 THSD7AQ9UPZ6 1657 aa22.86■■□□□ 1.25
CTHRC1-201ENST00000330295 KIF1BO60333 1816 aa22.85■■□□□ 1.25
CTHRC1-201ENST00000330295 NBPF8Q3BBV2 869 aa22.85■■□□□ 1.25
CTHRC1-201ENST00000330295 NBPF14Q5TI25 921 aa22.85■■□□□ 1.25
CTHRC1-201ENST00000330295 APBA3O96018 575 aa22.84■■□□□ 1.25
CTHRC1-201ENST00000330295 FMN2Q9NZ56 1722 aa22.83■■□□□ 1.25
CTHRC1-201ENST00000330295 BTG4Q9NY30 223 aa22.83■■□□□ 1.25
CTHRC1-201ENST00000330295 PSME1Q06323 249 aa22.82■■□□□ 1.24
CTHRC1-201ENST00000330295 FAM196AQ6ZSG2 479 aa22.82■■□□□ 1.24
CTHRC1-201ENST00000330295 SPATA31A5Q5VU36 1347 aa22.82■■□□□ 1.24
CTHRC1-201ENST00000330295 SPATA31A7Q8IWB4 1347 aa22.82■■□□□ 1.24
CTHRC1-201ENST00000330295 ARHGEF10O15013 1369 aa22.81■■□□□ 1.24
CTHRC1-201ENST00000330295 ROCK1Q13464 1354 aa22.8■■□□□ 1.24
CTHRC1-201ENST00000330295 LMOD2Q6P5Q4 547 aa22.8■■□□□ 1.24
CTHRC1-201ENST00000330295 SBNO1A3KN83 1393 aa22.79■■□□□ 1.24
CTHRC1-201ENST00000330295 UTRNP46939 3433 aa22.79■■□□□ 1.24
CTHRC1-201ENST00000330295 COL14A1Q05707 1796 aaKnown RBP22.78■■□□□ 1.24
CTHRC1-201ENST00000330295 WAPLQ7Z5K2 1190 aa22.78■■□□□ 1.24
CTHRC1-201ENST00000330295 PHF8Q9UPP1 1060 aa22.75■■□□□ 1.23
CTHRC1-201ENST00000330295 TECPR2O15040 1411 aa22.74■■□□□ 1.23
CTHRC1-201ENST00000330295 CHD4Q14839 1912 aa22.74■■□□□ 1.23
CTHRC1-201ENST00000330295 RGPD8O14715 1765 aaPredicted RBP22.73■■□□□ 1.23
CTHRC1-201ENST00000330295 RRBP1Q9P2E9 1410 aaKnown RBP22.73■■□□□ 1.23
CTHRC1-201ENST00000330295 RPGRIP1LQ68CZ1 1315 aa22.72■■□□□ 1.23
CTHRC1-201ENST00000330295 PLEKHH1Q9ULM0 1364 aa22.72■■□□□ 1.23
CTHRC1-201ENST00000330295 NRKQ7Z2Y5 1582 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms