RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 ADGRB3O60242 1522 aa28.41■■■□□ 2.14
SHMT1-201ENST00000316694 POGZQ7Z3K3 1410 aa28.41■■■□□ 2.14
SHMT1-201ENST00000316694 PDE3AQ14432 1141 aa28.41■■■□□ 2.14
SHMT1-201ENST00000316694 COG6Q9Y2V7 657 aa28.41■■■□□ 2.14
SHMT1-201ENST00000316694 FRMPD1Q5SYB0 1578 aa28.41■■■□□ 2.14
SHMT1-201ENST00000316694 TMEM132EQ6IEE7 984 aa28.41■■■□□ 2.14
SHMT1-201ENST00000316694 OSCARQ8IYS5 282 aa28.41■■■□□ 2.14
SHMT1-201ENST00000316694 FRAT1Q92837 279 aaPredicted RBP28.4■■■□□ 2.14
SHMT1-201ENST00000316694 NFKBIBQ15653 356 aa28.38■■■□□ 2.13
SHMT1-201ENST00000316694 SETBP1Q9Y6X0 1596 aa28.38■■■□□ 2.13
SHMT1-201ENST00000316694 CLUAP1Q96AJ1 413 aa28.37■■■□□ 2.13
SHMT1-201ENST00000316694 RUNDC1Q96C34 613 aa28.37■■■□□ 2.13
SHMT1-201ENST00000316694 SHPRHQ149N8 1683 aa28.37■■■□□ 2.13
SHMT1-201ENST00000316694 QRICH2Q9H0J4 1663 aa28.36■■■□□ 2.13
SHMT1-201ENST00000316694 C14orf93Q9H972 538 aaKnown RBP28.36■■■□□ 2.13
SHMT1-201ENST00000316694 MLH3Q9UHC1 1453 aa28.36■■■□□ 2.13
SHMT1-201ENST00000316694 RAPGEF3O95398 923 aa28.35■■■□□ 2.13
SHMT1-201ENST00000316694 NUTM2DQ5VT03 806 aaPredicted RBP28.35■■■□□ 2.13
SHMT1-201ENST00000316694 TCP11L2Q8N4U5 519 aa28.35■■■□□ 2.13
SHMT1-201ENST00000316694 NINLQ9Y2I6 1382 aa28.34■■■□□ 2.13
SHMT1-201ENST00000316694 PPLO60437 1756 aa28.34■■■□□ 2.13
SHMT1-201ENST00000316694 HECW2Q9P2P5 1572 aa28.33■■■□□ 2.13
SHMT1-201ENST00000316694 ZC3H13Q5T200 1668 aaKnown RBP28.32■■■□□ 2.12
SHMT1-201ENST00000316694 MTHFSP49914 203 aa28.32■■■□□ 2.12
SHMT1-201ENST00000316694 CFAP74Q9C0B2 1584 aa28.3■■■□□ 2.12
SHMT1-201ENST00000316694 RARSP54136 660 aaKnown RBP28.3■■■□□ 2.12
SHMT1-201ENST00000316694 ADGRB1O14514 1584 aa28.29■■■□□ 2.12
SHMT1-201ENST00000316694 BCL2L13Q9BXK5 485 aa28.28■■■□□ 2.12
SHMT1-201ENST00000316694 ABCC3O15438 1527 aa28.28■■■□□ 2.12
SHMT1-201ENST00000316694 CFAP53Q96M91 514 aa28.28■■■□□ 2.12
SHMT1-201ENST00000316694 IQSEC2Q5JU85 1478 aa28.27■■■□□ 2.12
SHMT1-201ENST00000316694 IL27Q8NEV9 243 aa28.27■■■□□ 2.12
SHMT1-201ENST00000316694 MAPK8IP3Q9UPT6 1336 aa28.27■■■□□ 2.12
SHMT1-201ENST00000316694 GSE1Q14687 1217 aa28.25■■■□□ 2.11
SHMT1-201ENST00000316694 SENP3Q9H4L4 574 aaPredicted RBP28.25■■■□□ 2.11
SHMT1-201ENST00000316694 VIRMAQ69YN4 1812 aaKnown RBP28.25■■■□□ 2.11
SHMT1-201ENST00000316694 TNNQ9UQP3 1299 aa28.25■■■□□ 2.11
SHMT1-201ENST00000316694 SIGLEC1Q9BZZ2 1709 aa28.24■■■□□ 2.11
SHMT1-201ENST00000316694 WDR63Q8IWG1 891 aa28.24■■■□□ 2.11
SHMT1-201ENST00000316694 PHF23Q9BUL5 403 aaPredicted RBP28.24■■■□□ 2.11
SHMT1-201ENST00000316694 RPGRIP1LQ68CZ1 1315 aa28.23■■■□□ 2.11
SHMT1-201ENST00000316694 RLBP1P12271 317 aa28.23■■■□□ 2.11
SHMT1-201ENST00000316694 SEC24BO95487 1268 aa28.21■■■□□ 2.11
SHMT1-201ENST00000316694 CAMSAP1Q5T5Y3 1602 aa28.21■■■□□ 2.11
SHMT1-201ENST00000316694 USP19O94966 1318 aa28.21■■■□□ 2.11
SHMT1-201ENST00000316694 EVC2Q86UK5 1308 aa28.21■■■□□ 2.11
SHMT1-201ENST00000316694 U2AF1L5P0DN76 240 aaPredicted RBP28.2■■■□□ 2.11
SHMT1-201ENST00000316694 U2AF1Q01081 240 aaKnown RBP eCLIP28.2■■■□□ 2.11
SHMT1-201ENST00000316694 USP32Q8NFA0 1604 aa28.2■■■□□ 2.11
SHMT1-201ENST00000316694 PMFBP1Q8TBY8 1022 aa28.19■■■□□ 2.1
SHMT1-201ENST00000316694 PCDHB15Q9Y5E8 787 aa28.19■■■□□ 2.1
SHMT1-201ENST00000316694 SAFB2Q14151 953 aaKnown RBP eCLIP28.18■■■□□ 2.1
SHMT1-201ENST00000316694 FRAT2O75474 233 aaPredicted RBP28.18■■■□□ 2.1
SHMT1-201ENST00000316694 GLI2P10070 1586 aa28.18■■■□□ 2.1
SHMT1-201ENST00000316694 CABP2Q9NPB3 220 aa28.17■■■□□ 2.1
SHMT1-201ENST00000316694 CCDC27Q2M243 656 aa28.17■■■□□ 2.1
SHMT1-201ENST00000316694 MYH16Q9H6N6 1097 aa28.16■■■□□ 2.1
SHMT1-201ENST00000316694 ANKRD36BQ8N2N9 1353 aa28.16■■■□□ 2.1
SHMT1-201ENST00000316694 VGFO15240 615 aaPredicted RBP28.16■■■□□ 2.1
SHMT1-201ENST00000316694 RTN4Q9NQC3 1192 aaKnown RBP28.16■■■□□ 2.1
SHMT1-201ENST00000316694 IDI1Q13907 227 aa28.15■■■□□ 2.1
SHMT1-201ENST00000316694 TULP4Q9NRJ4 1543 aa28.15■■■□□ 2.1
SHMT1-201ENST00000316694 AAMPQ13685 434 aa28.14■■■□□ 2.09
SHMT1-201ENST00000316694 NEO1Q92859 1461 aa28.13■■■□□ 2.09
SHMT1-201ENST00000316694 DIP2CQ9Y2E4 1556 aa28.13■■■□□ 2.09
SHMT1-201ENST00000316694 NEXMIFQ5QGS0 1516 aa28.12■■■□□ 2.09
SHMT1-201ENST00000316694 PIK3C2BO00750 1634 aa28.12■■■□□ 2.09
SHMT1-201ENST00000316694 ARHGEF28Q8N1W1 1705 aaKnown RBP28.12■■■□□ 2.09
SHMT1-201ENST00000316694 NSD2O96028 1365 aa28.11■■■□□ 2.09
SHMT1-201ENST00000316694 PDZRN3Q9UPQ7 1066 aa28.11■■■□□ 2.09
SHMT1-201ENST00000316694 STK26Q9P289 416 aa28.1■■■□□ 2.09
SHMT1-201ENST00000316694 PUS7Q96PZ0 661 aaKnown RBP28.09■■■□□ 2.09
SHMT1-201ENST00000316694 RWDD1Q9H446 243 aaPredicted RBP28.09■■■□□ 2.09
SHMT1-201ENST00000316694 TSR2Q969E8 191 aaKnown RBP28.08■■■□□ 2.09
SHMT1-201ENST00000316694 U2SURPO15042 1029 aaKnown RBP28.08■■■□□ 2.09
SHMT1-201ENST00000316694 YEATS2Q9ULM3 1422 aa28.07■■■□□ 2.08
SHMT1-201ENST00000316694 BECN1Q14457 450 aa28.07■■■□□ 2.08
SHMT1-201ENST00000316694 FTSJ3Q8IY81 847 aaKnown RBP28.07■■■□□ 2.08
SHMT1-201ENST00000316694 SRPK2P78362 688 aaKnown RBP28.07■■■□□ 2.08
SHMT1-201ENST00000316694 MVPQ14764 893 aaKnown RBP28.06■■■□□ 2.08
SHMT1-201ENST00000316694 BRPF3Q9ULD4 1205 aa28.06■■■□□ 2.08
SHMT1-201ENST00000316694 ZKSCAN2Q63HK3 967 aa28.05■■■□□ 2.08
SHMT1-201ENST00000316694 UPF2Q9HAU5 1272 aaKnown RBP28.05■■■□□ 2.08
SHMT1-201ENST00000316694 NLRP1Q9C000 1473 aa28.05■■■□□ 2.08
SHMT1-201ENST00000316694 GGNBP2Q9H3C7 697 aa28.04■■■□□ 2.08
SHMT1-201ENST00000316694 A0A1W2PP64 1363 aa28.04■■■□□ 2.08
SHMT1-201ENST00000316694 RICTORQ6R327 1708 aa28.04■■■□□ 2.08
SHMT1-201ENST00000316694 DZIP1LQ8IYY4 767 aaKnown RBP28.03■■■□□ 2.08
SHMT1-201ENST00000316694 ADGRB2O60241 1585 aa28.02■■■□□ 2.08
SHMT1-201ENST00000316694 SLKQ9H2G2 1235 aaPredicted RBP28.02■■■□□ 2.08
SHMT1-201ENST00000316694 ARHGAP31Q2M1Z3 1444 aa28.02■■■□□ 2.08
SHMT1-201ENST00000316694 SMC4Q9NTJ3 1288 aa28.02■■■□□ 2.08
SHMT1-201ENST00000316694 MYO5BQ9ULV0 1848 aa28.02■■■□□ 2.08
SHMT1-201ENST00000316694 NCBP3Q53F19 620 aaKnown RBP28.01■■■□□ 2.08
SHMT1-201ENST00000316694 EXOSC9Q06265 439 aaKnown RBP28■■■□□ 2.07
SHMT1-201ENST00000316694 SLC52A1Q9NWF4 448 aa28■■■□□ 2.07
SHMT1-201ENST00000316694 ABCC11Q96J66 1382 aa28■■■□□ 2.07
SHMT1-201ENST00000316694 TMPOP42166 694 aaKnown RBP27.99■■■□□ 2.07
SHMT1-201ENST00000316694 PLEKHF1Q96S99 279 aa27.98■■■□□ 2.07
SHMT1-201ENST00000316694 MINK1Q8N4C8 1332 aaPredicted RBP27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms