RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 FAM135BQ49AJ0 1406 aa25.51■■□□□ 1.67
HMGA1-201ENST00000311487 NKTRP30414 1462 aaKnown RBP25.51■■□□□ 1.67
HMGA1-201ENST00000311487 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.51■■□□□ 1.67
HMGA1-201ENST00000311487 SIRT1Q96EB6 747 aa25.49■■□□□ 1.67
HMGA1-201ENST00000311487 POLR3GLQ9BT43 218 aa25.49■■□□□ 1.67
HMGA1-201ENST00000311487 QRICH2Q9H0J4 1663 aa25.49■■□□□ 1.67
HMGA1-201ENST00000311487 C11orf95C9JLR9 678 aaPredicted RBP25.46■■□□□ 1.67
HMGA1-201ENST00000311487 XIRP1Q702N8 1843 aaKnown RBP25.45■■□□□ 1.67
HMGA1-201ENST00000311487 CABP2Q9NPB3 220 aa25.45■■□□□ 1.67
HMGA1-201ENST00000311487 CDK19Q9BWU1 502 aa25.44■■□□□ 1.66
HMGA1-201ENST00000311487 NALCNQ8IZF0 1738 aa25.44■■□□□ 1.66
HMGA1-201ENST00000311487 DISP3Q9P2K9 1392 aa25.43■■□□□ 1.66
HMGA1-201ENST00000311487 C19orf44Q9H6X5 657 aa25.43■■□□□ 1.66
HMGA1-201ENST00000311487 SRPK2P78362 688 aaKnown RBP25.42■■□□□ 1.66
HMGA1-201ENST00000311487 WASLO00401 505 aaPredicted RBP25.41■■□□□ 1.66
HMGA1-201ENST00000311487 ADGRL3Q9HAR2 1447 aa25.41■■□□□ 1.66
HMGA1-201ENST00000311487 MSH6P52701 1360 aa25.39■■□□□ 1.66
HMGA1-201ENST00000311487 ATF3P18847 181 aa25.39■■□□□ 1.65
HMGA1-201ENST00000311487 TMF1P82094 1093 aa25.38■■□□□ 1.65
HMGA1-201ENST00000311487 EVC2Q86UK5 1308 aa25.38■■□□□ 1.65
HMGA1-201ENST00000311487 TULP4Q9NRJ4 1543 aa25.38■■□□□ 1.65
HMGA1-201ENST00000311487 CERKQ8TCT0 537 aa25.37■■□□□ 1.65
HMGA1-201ENST00000311487 PRR36Q9H6K5 1346 aa25.33■■□□□ 1.65
HMGA1-201ENST00000311487 SBNO2Q9Y2G9 1366 aa25.32■■□□□ 1.64
HMGA1-201ENST00000311487 NUDT16Q96DE0 195 aaKnown RBP25.31■■□□□ 1.64
HMGA1-201ENST00000311487 TMC1Q8TDI8 760 aa25.31■■□□□ 1.64
HMGA1-201ENST00000311487 ORAI2Q96SN7 254 aa25.31■■□□□ 1.64
HMGA1-201ENST00000311487 NCOA3Q9Y6Q9 1424 aa25.3■■□□□ 1.64
HMGA1-201ENST00000311487 KIF7Q2M1P5 1343 aa25.3■■□□□ 1.64
HMGA1-201ENST00000311487 CADPS2Q86UW7 1296 aa25.3■■□□□ 1.64
HMGA1-201ENST00000311487 WASHC2AQ641Q2 1341 aa25.3■■□□□ 1.64
HMGA1-201ENST00000311487 PIP4K2BP78356 416 aa25.29■■□□□ 1.64
HMGA1-201ENST00000311487 ESCO1Q5FWF5 840 aa25.29■■□□□ 1.64
HMGA1-201ENST00000311487 PMFBP1Q8TBY8 1022 aa25.29■■□□□ 1.64
HMGA1-201ENST00000311487 SCAF1Q9H7N4 1312 aaKnown RBP25.29■■□□□ 1.64
HMGA1-201ENST00000311487 SLAIN2Q9P270 581 aa25.29■■□□□ 1.64
HMGA1-201ENST00000311487 ADGRB2O60241 1585 aa25.28■■□□□ 1.64
HMGA1-201ENST00000311487 RGPD8O14715 1765 aaPredicted RBP25.28■■□□□ 1.64
HMGA1-201ENST00000311487 UBAP1LF5GYI3 381 aa25.27■■□□□ 1.64
HMGA1-201ENST00000311487 CDC42BPGQ6DT37 1551 aa25.27■■□□□ 1.64
HMGA1-201ENST00000311487 ZNF316A6NFI3 1004 aaPredicted RBP25.27■■□□□ 1.64
HMGA1-201ENST00000311487 CABP1Q9NZU7 370 aa25.27■■□□□ 1.64
HMGA1-201ENST00000311487 DDX17Q92841 729 aaKnown RBP25.26■■□□□ 1.63
HMGA1-201ENST00000311487 SLC12A5Q9H2X9 1139 aa25.26■■□□□ 1.63
HMGA1-201ENST00000311487 MST1RQ04912 1400 aa25.25■■□□□ 1.63
HMGA1-201ENST00000311487 FMN2Q9NZ56 1722 aa25.24■■□□□ 1.63
HMGA1-201ENST00000311487 USP32Q8NFA0 1604 aa25.24■■□□□ 1.63
HMGA1-201ENST00000311487 ATP7BP35670 1465 aa25.23■■□□□ 1.63
HMGA1-201ENST00000311487 C1orf167Q5SNV9 1468 aa25.23■■□□□ 1.63
HMGA1-201ENST00000311487 CCDC7Q96M83 1385 aa25.22■■□□□ 1.63
HMGA1-201ENST00000311487 CCDC61Q9Y6R9 512 aa25.22■■□□□ 1.63
HMGA1-201ENST00000311487 XPCQ01831 940 aaPredicted RBP25.22■■□□□ 1.63
HMGA1-201ENST00000311487 DCCP43146 1447 aa25.21■■□□□ 1.63
HMGA1-201ENST00000311487 CDCA8Q53HL2 280 aa25.21■■□□□ 1.63
HMGA1-201ENST00000311487 PPIP5K1Q6PFW1 1433 aa25.2■■□□□ 1.63
HMGA1-201ENST00000311487 SLC24A1O60721 1099 aa25.2■■□□□ 1.62
HMGA1-201ENST00000311487 FOXO3O43524 673 aa25.2■■□□□ 1.62
HMGA1-201ENST00000311487 TOM1O60784 492 aa25.2■■□□□ 1.62
HMGA1-201ENST00000311487 BRINP3Q76B58 766 aa25.18■■□□□ 1.62
HMGA1-201ENST00000311487 PHF8Q9UPP1 1060 aa25.18■■□□□ 1.62
HMGA1-201ENST00000311487 NGDNQ8NEJ9 315 aaKnown RBP25.17■■□□□ 1.62
HMGA1-201ENST00000311487 ATAD2Q6PL18 1390 aa25.16■■□□□ 1.62
HMGA1-201ENST00000311487 DDX10Q13206 875 aaKnown RBP25.16■■□□□ 1.62
HMGA1-201ENST00000311487 ACEP12821 1306 aa25.15■■□□□ 1.62
HMGA1-201ENST00000311487 ANKARQ7Z5J8 1434 aa25.14■■□□□ 1.62
HMGA1-201ENST00000311487 CNGB1Q14028 1251 aaPredicted RBP25.14■■□□□ 1.61
HMGA1-201ENST00000311487 PANK3Q9H999 370 aa25.12■■□□□ 1.61
HMGA1-201ENST00000311487 PLEKHG5O94827 1062 aa25.11■■□□□ 1.61
HMGA1-201ENST00000311487 PUS7Q96PZ0 661 aaKnown RBP25.1■■□□□ 1.61
HMGA1-201ENST00000311487 MYOM1P52179 1685 aa25.1■■□□□ 1.61
HMGA1-201ENST00000311487 PLEKHG3A1L390 1219 aa25.1■■□□□ 1.61
HMGA1-201ENST00000311487 PSME1Q06323 249 aa25.1■■□□□ 1.61
HMGA1-201ENST00000311487 TOPAZ1Q8N9V7 1692 aa25.09■■□□□ 1.61
HMGA1-201ENST00000311487 IQSEC2Q5JU85 1478 aa25.08■■□□□ 1.61
HMGA1-201ENST00000311487 ROBO1Q9Y6N7 1651 aa25.08■■□□□ 1.61
HMGA1-201ENST00000311487 A0A1W2PP64 1363 aa25.08■■□□□ 1.6
HMGA1-201ENST00000311487 CARD14Q9BXL6 1004 aa25.08■■□□□ 1.6
HMGA1-201ENST00000311487 CD163L1Q9NR16 1453 aa25.07■■□□□ 1.6
HMGA1-201ENST00000311487 PAK3O75914 559 aaPredicted RBP25.07■■□□□ 1.6
HMGA1-201ENST00000311487 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.07■■□□□ 1.6
HMGA1-201ENST00000311487 ITSN1Q15811 1721 aa25.06■■□□□ 1.6
HMGA1-201ENST00000311487 HDGFL2Q7Z4V5 671 aaPredicted RBP25.05■■□□□ 1.6
HMGA1-201ENST00000311487 TERF2IPQ9NYB0 399 aa25.05■■□□□ 1.6
HMGA1-201ENST00000311487 KTN1Q86UP2 1357 aaKnown RBP25.05■■□□□ 1.6
HMGA1-201ENST00000311487 KRT28Q7Z3Y7 464 aa25.04■■□□□ 1.6
HMGA1-201ENST00000311487 LMOD2Q6P5Q4 547 aa25.04■■□□□ 1.6
HMGA1-201ENST00000311487 NUTM2GQ5VZR2 741 aa25.03■■□□□ 1.6
HMGA1-201ENST00000311487 POLR3AO14802 1390 aaPredicted RBP25.02■■□□□ 1.6
HMGA1-201ENST00000311487 ANKRD36BQ8N2N9 1353 aa25.01■■□□□ 1.59
HMGA1-201ENST00000311487 CPSF1Q10570 1443 aaKnown RBP25.01■■□□□ 1.59
HMGA1-201ENST00000311487 NPHP3Q7Z494 1330 aa25■■□□□ 1.59
HMGA1-201ENST00000311487 NINLQ9Y2I6 1382 aa24.99■■□□□ 1.59
HMGA1-201ENST00000311487 ZRANB1Q9UGI0 708 aa24.99■■□□□ 1.59
HMGA1-201ENST00000311487 NSD3Q9BZ95 1437 aa24.98■■□□□ 1.59
HMGA1-201ENST00000311487 DIEXFQ68CQ4 756 aaKnown RBP24.98■■□□□ 1.59
HMGA1-201ENST00000311487 ZNF692Q9BU19 519 aaPredicted RBP24.98■■□□□ 1.59
HMGA1-201ENST00000311487 USP6P35125 1406 aa24.97■■□□□ 1.59
HMGA1-201ENST00000311487 KIF1AQ12756 1690 aa24.97■■□□□ 1.59
HMGA1-201ENST00000311487 NME9Q86XW9 330 aa24.96■■□□□ 1.59
HMGA1-201ENST00000311487 HSPA1LP34931 641 aa24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms