RNA–Protein interactions for RNA: ENST00000303531.11

PRKCB-201, Transcript of protein kinase C beta, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PRKCB, Length 7,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-201ENST00000303531 CCDC70Q6NSX1 233 aa16.88■□□□□ 0.29
PRKCB-201ENST00000303531 RAD21O60216 631 aa16.88■□□□□ 0.29
PRKCB-201ENST00000303531 UBTFL1P0CB47 393 aaPredicted RBP16.88■□□□□ 0.29
PRKCB-201ENST00000303531 VSIG10Q8N0Z9 540 aa16.88■□□□□ 0.29
PRKCB-201ENST00000303531 SYTL4Q96C24 671 aaPredicted RBP16.88■□□□□ 0.29
PRKCB-201ENST00000303531 HOOK1Q9UJC3 728 aaKnown RBP16.88■□□□□ 0.29
PRKCB-201ENST00000303531 FAM43AQ8N2R8 423 aa16.88■□□□□ 0.29
PRKCB-201ENST00000303531 VPS37DQ86XT2 251 aa16.88■□□□□ 0.29
PRKCB-201ENST00000303531 ANKRD20A12PQ8NF67 263 aa16.88■□□□□ 0.29
PRKCB-201ENST00000303531 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.87■□□□□ 0.29
PRKCB-201ENST00000303531 IPO7O95373 1038 aaKnown RBP16.87■□□□□ 0.29
PRKCB-201ENST00000303531 AIMP1Q12904 312 aaKnown RBP16.87■□□□□ 0.29
PRKCB-201ENST00000303531 ANO8Q9HCE9 1232 aaPredicted RBP16.87■□□□□ 0.29
PRKCB-201ENST00000303531 RIC3Q7Z5B4 369 aa16.87■□□□□ 0.29
PRKCB-201ENST00000303531 CCDC73Q6ZRK6 1079 aa16.86■□□□□ 0.29
PRKCB-201ENST00000303531 CCDC47Q96A33 483 aaKnown RBP16.86■□□□□ 0.29
PRKCB-201ENST00000303531 CFAP70Q5T0N1 1121 aa16.86■□□□□ 0.29
PRKCB-201ENST00000303531 NEUROD6Q96NK8 337 aa16.86■□□□□ 0.29
PRKCB-201ENST00000303531 ERICH2A1L162 156 aa16.85■□□□□ 0.29
PRKCB-201ENST00000303531 RAPGEF4Q8WZA2 1011 aa16.85■□□□□ 0.29
PRKCB-201ENST00000303531 NUTM2GQ5VZR2 741 aa16.85■□□□□ 0.29
PRKCB-201ENST00000303531 DHX16O60231 1041 aaKnown RBP16.85■□□□□ 0.29
PRKCB-201ENST00000303531 ZNF771Q7L3S4 317 aaPredicted RBP16.85■□□□□ 0.29
PRKCB-201ENST00000303531 PRM3Q9NNZ6 103 aa16.85■□□□□ 0.29
PRKCB-201ENST00000303531 RRBP1Q9P2E9 1410 aaKnown RBP16.85■□□□□ 0.29
PRKCB-201ENST00000303531 PDZRN3Q9UPQ7 1066 aa16.84■□□□□ 0.29
PRKCB-201ENST00000303531 AQRO60306 1485 aaKnown RBP eCLIP16.84■□□□□ 0.291e-6■■■■■ 28
PRKCB-201ENST00000303531 MRE11P49959 708 aa16.84■□□□□ 0.29
PRKCB-201ENST00000303531 EXOSC9Q06265 439 aaKnown RBP16.84■□□□□ 0.29
PRKCB-201ENST00000303531 ARAP1Q96P48 1450 aa16.84■□□□□ 0.29
PRKCB-201ENST00000303531 NINLQ9Y2I6 1382 aa16.84■□□□□ 0.29
PRKCB-201ENST00000303531 ARHGAP5Q13017 1502 aa16.84■□□□□ 0.29
PRKCB-201ENST00000303531 NASPP49321 788 aaPredicted RBP16.83■□□□□ 0.29
PRKCB-201ENST00000303531 IFT57Q9NWB7 429 aa16.83■□□□□ 0.29
PRKCB-201ENST00000303531 RALYLQ86SE5 291 aaKnown RBP16.83■□□□□ 0.28
PRKCB-201ENST00000303531 TRIM34Q9BYJ4 488 aa16.83■□□□□ 0.28
PRKCB-201ENST00000303531 CFTRP13569 1480 aa16.83■□□□□ 0.28
PRKCB-201ENST00000303531 CNTROBQ8N137 903 aa16.83■□□□□ 0.28
PRKCB-201ENST00000303531 WASHC4Q2M389 1173 aa16.82■□□□□ 0.28
PRKCB-201ENST00000303531 OSCARQ8IYS5 282 aa16.82■□□□□ 0.28
PRKCB-201ENST00000303531 NBPF1Q3BBV0 1214 aa16.82■□□□□ 0.28
PRKCB-201ENST00000303531 PRKAR2BP31323 418 aa16.82■□□□□ 0.28
PRKCB-201ENST00000303531 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.82■□□□□ 0.28
PRKCB-201ENST00000303531 AKNAQ7Z591 1439 aa16.82■□□□□ 0.28
PRKCB-201ENST00000303531 MSH5O43196 834 aa16.82■□□□□ 0.28
PRKCB-201ENST00000303531 SAFBQ15424 915 aaKnown RBP eCLIP16.82■□□□□ 0.283e-6■■■□□ 15
PRKCB-201ENST00000303531 TRAK2O60296 914 aa16.82■□□□□ 0.28
PRKCB-201ENST00000303531 NLRP6P59044 892 aa16.81■□□□□ 0.28
PRKCB-201ENST00000303531 RNF214Q8ND24 703 aa16.81■□□□□ 0.28
PRKCB-201ENST00000303531 C1orf115Q9H7X2 142 aa16.81■□□□□ 0.28
PRKCB-201ENST00000303531 GNAI3P08754 354 aa16.8■□□□□ 0.28
PRKCB-201ENST00000303531 TCEAL9Q9UHQ7 104 aa16.8■□□□□ 0.28
PRKCB-201ENST00000303531 FSD1Q9BTV5 496 aa16.8■□□□□ 0.28
PRKCB-201ENST00000303531 NLRP2Q9NX02 1062 aa16.8■□□□□ 0.28
PRKCB-201ENST00000303531 SURF6O75683 361 aaKnown RBP16.8■□□□□ 0.28
PRKCB-201ENST00000303531 PSMA5P28066 241 aa16.8■□□□□ 0.28
PRKCB-201ENST00000303531 AFAP1Q8N556 730 aa16.8■□□□□ 0.28
PRKCB-201ENST00000303531 SETQ01105 290 aaPredicted RBP16.8■□□□□ 0.28
PRKCB-201ENST00000303531 BCAR3O75815 825 aa16.8■□□□□ 0.28
PRKCB-201ENST00000303531 CCDC30Q5VVM6 783 aa16.8■□□□□ 0.28
PRKCB-201ENST00000303531 ERICH3Q5RHP9 1530 aa16.8■□□□□ 0.28
PRKCB-201ENST00000303531 PDE3AQ14432 1141 aa16.79■□□□□ 0.28
PRKCB-201ENST00000303531 FAM69CQ0P6D2 419 aa16.79■□□□□ 0.28
PRKCB-201ENST00000303531 CLASRPQ8N2M8 674 aaKnown RBP16.79■□□□□ 0.28
PRKCB-201ENST00000303531 TWISTNBQ3B726 338 aaPredicted RBP16.79■□□□□ 0.28
PRKCB-201ENST00000303531 CAVIN1Q6NZI2 390 aaKnown RBP16.79■□□□□ 0.28
PRKCB-201ENST00000303531 NEK4P51957 841 aa16.79■□□□□ 0.28
PRKCB-201ENST00000303531 CCDC27Q2M243 656 aa16.79■□□□□ 0.28
PRKCB-201ENST00000303531 TSR2Q969E8 191 aaKnown RBP16.79■□□□□ 0.28
PRKCB-201ENST00000303531 CCDC39Q9UFE4 941 aa16.79■□□□□ 0.28
PRKCB-201ENST00000303531 NOB1Q9ULX3 412 aaKnown RBP16.79■□□□□ 0.28
PRKCB-201ENST00000303531 NBPF8Q3BBV2 869 aa16.78■□□□□ 0.28
PRKCB-201ENST00000303531 WWC1Q8IX03 1113 aa16.78■□□□□ 0.28
PRKCB-201ENST00000303531 GAS2L2Q8NHY3 880 aa16.77■□□□□ 0.28
PRKCB-201ENST00000303531 GCC1Q96CN9 775 aa16.77■□□□□ 0.27
PRKCB-201ENST00000303531 TEX35Q5T0J7 233 aa16.77■□□□□ 0.27
PRKCB-201ENST00000303531 SDF4Q9BRK5 362 aa16.76■□□□□ 0.27
PRKCB-201ENST00000303531 NAT10Q9H0A0 1025 aaKnown RBP16.76■□□□□ 0.27
PRKCB-201ENST00000303531 R3HCC1Q9Y3T6 440 aaKnown RBP16.76■□□□□ 0.27
PRKCB-201ENST00000303531 MNS1Q8NEH6 495 aa16.76■□□□□ 0.27
PRKCB-201ENST00000303531 SCAPERQ9BY12 1400 aa16.76■□□□□ 0.27
PRKCB-201ENST00000303531 RABEP1Q15276 862 aa16.76■□□□□ 0.27
PRKCB-201ENST00000303531 KIAA1107Q9UPP5 1409 aa16.75■□□□□ 0.27
PRKCB-201ENST00000303531 CTDP1Q9Y5B0 961 aaPredicted RBP16.75■□□□□ 0.27
PRKCB-201ENST00000303531 HFM1A2PYH4 1435 aa16.75■□□□□ 0.27
PRKCB-201ENST00000303531 PRPF40AO75400 957 aaKnown RBP16.75■□□□□ 0.27
PRKCB-201ENST00000303531 PNISRQ8TF01 805 aaKnown RBP16.75■□□□□ 0.27
PRKCB-201ENST00000303531 FYB1O15117 783 aa16.75■□□□□ 0.27
PRKCB-201ENST00000303531 PRAM1Q96QH2 718 aa16.75■□□□□ 0.27
PRKCB-201ENST00000303531 SLC12A5Q9H2X9 1139 aa16.75■□□□□ 0.27
PRKCB-201ENST00000303531 MBD3O95983 291 aa16.74■□□□□ 0.27
PRKCB-201ENST00000303531 OLFM4Q6UX06 510 aa16.74■□□□□ 0.27
PRKCB-201ENST00000303531 BCL11BQ9C0K0 894 aaPredicted RBP16.74■□□□□ 0.27
PRKCB-201ENST00000303531 ATF3P18847 181 aa16.74■□□□□ 0.27
PRKCB-201ENST00000303531 DNAJC2Q99543 621 aaKnown RBP16.74■□□□□ 0.27
PRKCB-201ENST00000303531 MCM2P49736 904 aa16.73■□□□□ 0.27
PRKCB-201ENST00000303531 GNAI2P04899 355 aa16.73■□□□□ 0.27
PRKCB-201ENST00000303531 ABTB2Q8N961 1025 aa16.73■□□□□ 0.27
PRKCB-201ENST00000303531 ARGLU1Q9NWB6 273 aaPredicted RBP16.73■□□□□ 0.27
PRKCB-201ENST00000303531 KDM4AO75164 1064 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 250 ms