RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 E9PSI1 815 aa13.38□□□□□ -0.27
HDGFL3-201ENST00000299633 FRAT2O75474 233 aaPredicted RBP13.38□□□□□ -0.27
HDGFL3-201ENST00000299633 CHMP4AQ9BY43 222 aa13.38□□□□□ -0.27
HDGFL3-201ENST00000299633 NUP155O75694 1391 aa13.38□□□□□ -0.27
HDGFL3-201ENST00000299633 ZMYND15Q9H091 742 aa13.38□□□□□ -0.27
HDGFL3-201ENST00000299633 TOMM22Q9NS69 142 aa13.38□□□□□ -0.27
HDGFL3-201ENST00000299633 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.38□□□□□ -0.27
HDGFL3-201ENST00000299633 CCDC43Q96MW1 224 aaKnown RBP13.38□□□□□ -0.27
HDGFL3-201ENST00000299633 CRBNQ96SW2 442 aa13.38□□□□□ -0.27
HDGFL3-201ENST00000299633 CFAP45Q9UL16 551 aa13.38□□□□□ -0.27
HDGFL3-201ENST00000299633 FEZ1Q99689 392 aa13.38□□□□□ -0.27
HDGFL3-201ENST00000299633 SWAP70Q9UH65 585 aa13.38□□□□□ -0.27
HDGFL3-201ENST00000299633 STAMBPO95630 424 aa13.37□□□□□ -0.27
HDGFL3-201ENST00000299633 ZHX1Q9UKY1 873 aaPredicted RBP13.37□□□□□ -0.27
HDGFL3-201ENST00000299633 FHOD3Q2V2M9 1422 aa13.37□□□□□ -0.27
HDGFL3-201ENST00000299633 SMC4Q9NTJ3 1288 aa13.37□□□□□ -0.27
HDGFL3-201ENST00000299633 MRE11P49959 708 aa13.37□□□□□ -0.27
HDGFL3-201ENST00000299633 KIF15Q9NS87 1388 aa13.36□□□□□ -0.27
HDGFL3-201ENST00000299633 FYB1O15117 783 aa13.36□□□□□ -0.27
HDGFL3-201ENST00000299633 SYNE3Q6ZMZ3 975 aa13.36□□□□□ -0.27
HDGFL3-201ENST00000299633 TMCO5BA8MYB1 307 aa13.36□□□□□ -0.27
HDGFL3-201ENST00000299633 MAP2K1Q02750 393 aaPredicted RBP13.36□□□□□ -0.27
HDGFL3-201ENST00000299633 SHTN1A0MZ66 631 aa13.36□□□□□ -0.27
HDGFL3-201ENST00000299633 KIF3BO15066 747 aa13.36□□□□□ -0.27
HDGFL3-201ENST00000299633 ERLIN1O75477 346 aa13.35□□□□□ -0.27
HDGFL3-201ENST00000299633 RNF20Q5VTR2 975 aa13.35□□□□□ -0.27
HDGFL3-201ENST00000299633 CLUAP1Q96AJ1 413 aa13.35□□□□□ -0.27
HDGFL3-201ENST00000299633 SMC2O95347 1197 aa13.35□□□□□ -0.27
HDGFL3-201ENST00000299633 KAT6AQ92794 2004 aa13.35□□□□□ -0.27
HDGFL3-201ENST00000299633 CCDC73Q6ZRK6 1079 aa13.35□□□□□ -0.27
HDGFL3-201ENST00000299633 LUZP1Q86V48 1076 aa13.35□□□□□ -0.27
HDGFL3-201ENST00000299633 CCDC18Q5T9S5 1454 aa13.35□□□□□ -0.27
HDGFL3-201ENST00000299633 DDX23Q9BUQ8 820 aaKnown RBP13.35□□□□□ -0.27
HDGFL3-201ENST00000299633 HDAC5Q9UQL6 1122 aa13.35□□□□□ -0.27
HDGFL3-201ENST00000299633 MICALCLQ6ZW33 695 aa13.34□□□□□ -0.27
HDGFL3-201ENST00000299633 CPSF2Q9P2I0 782 aaKnown RBP13.34□□□□□ -0.27
HDGFL3-201ENST00000299633 CENPJQ9HC77 1338 aaPredicted RBP13.34□□□□□ -0.27
HDGFL3-201ENST00000299633 MSH5O43196 834 aa13.34□□□□□ -0.27
HDGFL3-201ENST00000299633 RRP1P56182 461 aaKnown RBP13.34□□□□□ -0.27
HDGFL3-201ENST00000299633 AK9Q5TCS8 1911 aa13.33□□□□□ -0.27
HDGFL3-201ENST00000299633 PAIP2Q9BPZ3 127 aaKnown RBP13.33□□□□□ -0.28
HDGFL3-201ENST00000299633 HDGFL2Q7Z4V5 671 aaPredicted RBP13.33□□□□□ -0.28
HDGFL3-201ENST00000299633 CAVIN1Q6NZI2 390 aaKnown RBP13.33□□□□□ -0.28
HDGFL3-201ENST00000299633 CCDC112Q8NEF3 446 aa13.33□□□□□ -0.28
HDGFL3-201ENST00000299633 CENPQQ7L2Z9 268 aaPredicted RBP13.33□□□□□ -0.28
HDGFL3-201ENST00000299633 ANKRD30AQ9BXX3 1397 aa13.33□□□□□ -0.28
HDGFL3-201ENST00000299633 DHX8Q14562 1220 aaKnown RBP13.33□□□□□ -0.28
HDGFL3-201ENST00000299633 IBSPP21815 317 aaPredicted RBP13.32□□□□□ -0.28
HDGFL3-201ENST00000299633 TRIM34Q9BYJ4 488 aa13.32□□□□□ -0.28
HDGFL3-201ENST00000299633 NUCB2P80303 420 aa13.32□□□□□ -0.28
HDGFL3-201ENST00000299633 ZWINTO95229 277 aa13.32□□□□□ -0.28
HDGFL3-201ENST00000299633 FAM114A1Q8IWE2 563 aa13.32□□□□□ -0.28
HDGFL3-201ENST00000299633 MPNDQ8N594 471 aa13.32□□□□□ -0.28
HDGFL3-201ENST00000299633 STK31Q9BXU1 1019 aa13.32□□□□□ -0.28
HDGFL3-201ENST00000299633 TRIM5Q9C035 493 aa13.31□□□□□ -0.28
HDGFL3-201ENST00000299633 MLECQ14165 292 aa13.31□□□□□ -0.28
HDGFL3-201ENST00000299633 PAF1Q8N7H5 531 aa13.31□□□□□ -0.28
HDGFL3-201ENST00000299633 TXLNBQ8N3L3 684 aa13.31□□□□□ -0.28
HDGFL3-201ENST00000299633 LETM1O95202 739 aaPredicted RBP13.31□□□□□ -0.28
HDGFL3-201ENST00000299633 KIAA1328Q86T90 577 aa13.31□□□□□ -0.28
HDGFL3-201ENST00000299633 CPLX2Q6PUV4 134 aaKnown RBP13.31□□□□□ -0.28
HDGFL3-201ENST00000299633 CGNQ9P2M7 1197 aaKnown RBP13.3□□□□□ -0.28
HDGFL3-201ENST00000299633 SETD1BQ9UPS6 1966 aaKnown RBP13.3□□□□□ -0.28
HDGFL3-201ENST00000299633 G3V3G9 751 aa13.3□□□□□ -0.28
HDGFL3-201ENST00000299633 DCAF8Q5TAQ9 597 aa13.3□□□□□ -0.28
HDGFL3-201ENST00000299633 TMCO3Q6UWJ1 677 aa13.3□□□□□ -0.28
HDGFL3-201ENST00000299633 KIF7Q2M1P5 1343 aa13.3□□□□□ -0.28
HDGFL3-201ENST00000299633 RNF214Q8ND24 703 aa13.3□□□□□ -0.28
HDGFL3-201ENST00000299633 DHX57Q6P158 1386 aaKnown RBP13.3□□□□□ -0.28
HDGFL3-201ENST00000299633 LUC7LQ9NQ29 371 aaKnown RBP13.3□□□□□ -0.28
HDGFL3-201ENST00000299633 L3MBTL2Q969R5 705 aa13.3□□□□□ -0.28
HDGFL3-201ENST00000299633 PHLDB1Q86UU1 1377 aa13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 CCDC102AQ96A19 550 aa13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 ZBED9Q6R2W3 1325 aa13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 RILPL2Q969X0 211 aa13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 MAGEC2Q9UBF1 373 aaPredicted RBP13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 NLRP13Q86W25 1043 aa13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 CPLX1O14810 134 aa13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 KIF3CO14782 793 aa13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 NAP1L3Q99457 506 aaPredicted RBP13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 CCDC181Q5TID7 509 aa13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 RRP7AQ9Y3A4 280 aaKnown RBP13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 CHMP5Q9NZZ3 219 aa13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 DNAJC2Q99543 621 aaKnown RBP13.29□□□□□ -0.28
HDGFL3-201ENST00000299633 ZNHIT6Q9NWK9 470 aaKnown RBP13.28□□□□□ -0.28
HDGFL3-201ENST00000299633 SPAG9O60271 1321 aaKnown RBP13.28□□□□□ -0.28
HDGFL3-201ENST00000299633 MNAT1P51948 309 aa13.28□□□□□ -0.28
HDGFL3-201ENST00000299633 POLR3GO15318 223 aaPredicted RBP13.28□□□□□ -0.28
HDGFL3-201ENST00000299633 MYH11P35749 1972 aa13.28□□□□□ -0.28
HDGFL3-201ENST00000299633 BBXQ8WY36 941 aaPredicted RBP13.28□□□□□ -0.28
HDGFL3-201ENST00000299633 MYBBP1AQ9BQG0 1328 aaKnown RBP13.28□□□□□ -0.28
HDGFL3-201ENST00000299633 TSPY26PQ9H489 355 aa13.28□□□□□ -0.28
HDGFL3-201ENST00000299633 SYCP1Q15431 976 aa13.27□□□□□ -0.28
HDGFL3-201ENST00000299633 LRRFIP1Q32MZ4 808 aaKnown RBP13.27□□□□□ -0.28
HDGFL3-201ENST00000299633 SOGA3Q5TF21 947 aa13.27□□□□□ -0.28
HDGFL3-201ENST00000299633 REC8O95072 547 aa13.27□□□□□ -0.29
HDGFL3-201ENST00000299633 PDCL2Q8N4E4 241 aa13.27□□□□□ -0.29
HDGFL3-201ENST00000299633 MAP9Q49MG5 647 aa13.27□□□□□ -0.29
HDGFL3-201ENST00000299633 ANO2Q9NQ90 1003 aa13.27□□□□□ -0.29
HDGFL3-201ENST00000299633 VGFO15240 615 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms