RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 KIF1BO60333 1816 aa31.5■■■□□ 2.63
SPTSSA-201ENST00000298130 USP35Q9P2H5 1018 aa31.5■■■□□ 2.63
SPTSSA-201ENST00000298130 RUNDC1Q96C34 613 aa31.49■■■□□ 2.63
SPTSSA-201ENST00000298130 KIAA1210Q9ULL0 1709 aa31.48■■■□□ 2.63
SPTSSA-201ENST00000298130 SLC24A1O60721 1099 aa31.48■■■□□ 2.63
SPTSSA-201ENST00000298130 CABP2Q9NPB3 220 aa31.48■■■□□ 2.63
SPTSSA-201ENST00000298130 NPATQ14207 1427 aa31.47■■■□□ 2.63
SPTSSA-201ENST00000298130 RARSP54136 660 aaKnown RBP31.46■■■□□ 2.63
SPTSSA-201ENST00000298130 STK26Q9P289 416 aa31.46■■■□□ 2.63
SPTSSA-201ENST00000298130 CGNL1Q0VF96 1302 aa31.45■■■□□ 2.62
SPTSSA-201ENST00000298130 KIDINS220Q9ULH0 1771 aa31.45■■■□□ 2.62
SPTSSA-201ENST00000298130 PDE3AQ14432 1141 aa31.45■■■□□ 2.62
SPTSSA-201ENST00000298130 U2AF1L5P0DN76 240 aaPredicted RBP31.44■■■□□ 2.62
SPTSSA-201ENST00000298130 U2AF1Q01081 240 aaKnown RBP eCLIP31.44■■■□□ 2.62
SPTSSA-201ENST00000298130 PCDHB15Q9Y5E8 787 aa31.43■■■□□ 2.62
SPTSSA-201ENST00000298130 RAPGEF3O95398 923 aa31.42■■■□□ 2.62
SPTSSA-201ENST00000298130 NRXN1Q9ULB1 1477 aa31.4■■■□□ 2.62
SPTSSA-201ENST00000298130 FRAT2O75474 233 aaPredicted RBP31.4■■■□□ 2.62
SPTSSA-201ENST00000298130 SBNO2Q9Y2G9 1366 aa31.39■■■□□ 2.62
SPTSSA-201ENST00000298130 NPM1P06748 294 aaKnown RBP eCLIP31.38■■■□□ 2.61
SPTSSA-201ENST00000298130 TSR2Q969E8 191 aaKnown RBP31.38■■■□□ 2.61
SPTSSA-201ENST00000298130 USP19O94966 1318 aa31.37■■■□□ 2.61
SPTSSA-201ENST00000298130 IFT172Q9UG01 1749 aa31.37■■■□□ 2.61
SPTSSA-201ENST00000298130 ADGRB3O60242 1522 aa31.36■■■□□ 2.61
SPTSSA-201ENST00000298130 ZNF518AQ6AHZ1 1483 aa31.36■■■□□ 2.61
SPTSSA-201ENST00000298130 U2SURPO15042 1029 aaKnown RBP31.35■■■□□ 2.61
SPTSSA-201ENST00000298130 CFAP53Q96M91 514 aa31.35■■■□□ 2.61
SPTSSA-201ENST00000298130 GGNBP2Q9H3C7 697 aa31.34■■■□□ 2.61
SPTSSA-201ENST00000298130 NGEFQ8N5V2 710 aa31.34■■■□□ 2.61
SPTSSA-201ENST00000298130 GSE1Q14687 1217 aa31.33■■■□□ 2.61
SPTSSA-201ENST00000298130 SHPRHQ149N8 1683 aa31.32■■■□□ 2.6
SPTSSA-201ENST00000298130 NEURL4Q96JN8 1562 aa31.31■■■□□ 2.6
SPTSSA-201ENST00000298130 ADGRB1O14514 1584 aa31.31■■■□□ 2.6
SPTSSA-201ENST00000298130 QRICH2Q9H0J4 1663 aa31.31■■■□□ 2.6
SPTSSA-201ENST00000298130 SRPK2P78362 688 aaKnown RBP31.3■■■□□ 2.6
SPTSSA-201ENST00000298130 BRPF3Q9ULD4 1205 aa31.3■■■□□ 2.6
SPTSSA-201ENST00000298130 EVC2Q86UK5 1308 aa31.3■■■□□ 2.6
SPTSSA-201ENST00000298130 PHF23Q9BUL5 403 aaPredicted RBP31.29■■■□□ 2.6
SPTSSA-201ENST00000298130 CD109Q6YHK3 1445 aa31.29■■■□□ 2.6
SPTSSA-201ENST00000298130 PDZRN3Q9UPQ7 1066 aa31.29■■■□□ 2.6
SPTSSA-201ENST00000298130 SLKQ9H2G2 1235 aaPredicted RBP31.28■■■□□ 2.6
SPTSSA-201ENST00000298130 MYO3AQ8NEV4 1616 aa31.28■■■□□ 2.6
SPTSSA-201ENST00000298130 WDR63Q8IWG1 891 aa31.28■■■□□ 2.6
SPTSSA-201ENST00000298130 IDI1Q13907 227 aa31.26■■■□□ 2.59
SPTSSA-201ENST00000298130 MINK1Q8N4C8 1332 aaPredicted RBP31.25■■■□□ 2.59
SPTSSA-201ENST00000298130 IQSEC2Q5JU85 1478 aa31.25■■■□□ 2.59
SPTSSA-201ENST00000298130 FRMPD1Q5SYB0 1578 aa31.25■■■□□ 2.59
SPTSSA-201ENST00000298130 LMTK2Q8IWU2 1503 aa31.24■■■□□ 2.59
SPTSSA-201ENST00000298130 MAPK8IP3Q9UPT6 1336 aa31.24■■■□□ 2.59
SPTSSA-201ENST00000298130 SETBP1Q9Y6X0 1596 aa31.23■■■□□ 2.59
SPTSSA-201ENST00000298130 VGFO15240 615 aaPredicted RBP31.22■■■□□ 2.59
SPTSSA-201ENST00000298130 FBLN1P23142 703 aa31.22■■■□□ 2.59
SPTSSA-201ENST00000298130 POGZQ7Z3K3 1410 aa31.22■■■□□ 2.59
SPTSSA-201ENST00000298130 EXOSC9Q06265 439 aaKnown RBP31.22■■■□□ 2.59
SPTSSA-201ENST00000298130 PMFBP1Q8TBY8 1022 aa31.21■■■□□ 2.59
SPTSSA-201ENST00000298130 PPLO60437 1756 aa31.21■■■□□ 2.59
SPTSSA-201ENST00000298130 FTSJ3Q8IY81 847 aaKnown RBP31.21■■■□□ 2.59
SPTSSA-201ENST00000298130 MYH16Q9H6N6 1097 aa31.21■■■□□ 2.59
SPTSSA-201ENST00000298130 TULP4Q9NRJ4 1543 aa31.2■■■□□ 2.58
SPTSSA-201ENST00000298130 ANKRD36BQ8N2N9 1353 aa31.2■■■□□ 2.58
SPTSSA-201ENST00000298130 SPRYD3Q8NCJ5 442 aa31.19■■■□□ 2.58
SPTSSA-201ENST00000298130 NINLQ9Y2I6 1382 aa31.19■■■□□ 2.58
SPTSSA-201ENST00000298130 SMC4Q9NTJ3 1288 aa31.18■■■□□ 2.58
SPTSSA-201ENST00000298130 RPGRIP1LQ68CZ1 1315 aa31.18■■■□□ 2.58
SPTSSA-201ENST00000298130 A0A1W2PP64 1363 aa31.18■■■□□ 2.58
SPTSSA-201ENST00000298130 GLI2P10070 1586 aa31.16■■■□□ 2.58
SPTSSA-201ENST00000298130 ABCC3O15438 1527 aa31.16■■■□□ 2.58
SPTSSA-201ENST00000298130 MVPQ14764 893 aaKnown RBP31.16■■■□□ 2.58
SPTSSA-201ENST00000298130 CCDC27Q2M243 656 aa31.15■■■□□ 2.58
SPTSSA-201ENST00000298130 ZC3H13Q5T200 1668 aaKnown RBP31.15■■■□□ 2.58
SPTSSA-201ENST00000298130 ZKSCAN2Q63HK3 967 aa31.15■■■□□ 2.58
SPTSSA-201ENST00000298130 DZIP1LQ8IYY4 767 aaKnown RBP31.14■■■□□ 2.58
SPTSSA-201ENST00000298130 PRAM1Q96QH2 718 aa31.14■■■□□ 2.58
SPTSSA-201ENST00000298130 RWDD1Q9H446 243 aaPredicted RBP31.14■■■□□ 2.58
SPTSSA-201ENST00000298130 TMPOP42166 694 aaKnown RBP31.13■■■□□ 2.57
SPTSSA-201ENST00000298130 SSH1Q8WYL5 1049 aa31.13■■■□□ 2.57
SPTSSA-201ENST00000298130 TRIM35Q9UPQ4 493 aa31.13■■■□□ 2.57
SPTSSA-201ENST00000298130 ITPRIPQ8IWB1 547 aa31.12■■■□□ 2.57
SPTSSA-201ENST00000298130 POGKQ9P215 609 aa31.11■■■□□ 2.57
SPTSSA-201ENST00000298130 SIGLEC1Q9BZZ2 1709 aa31.11■■■□□ 2.57
SPTSSA-201ENST00000298130 TRIM27P14373 513 aa31.11■■■□□ 2.57
SPTSSA-201ENST00000298130 FYB1O15117 783 aa31.11■■■□□ 2.57
SPTSSA-201ENST00000298130 PLEKHF1Q96S99 279 aa31.1■■■□□ 2.57
SPTSSA-201ENST00000298130 MLH3Q9UHC1 1453 aa31.1■■■□□ 2.57
SPTSSA-201ENST00000298130 FBXO31Q5XUX0 539 aaPredicted RBP31.09■■■□□ 2.57
SPTSSA-201ENST00000298130 RIPK4P57078 832 aa31.08■■■□□ 2.57
SPTSSA-201ENST00000298130 NOB1Q9ULX3 412 aaKnown RBP31.08■■■□□ 2.57
SPTSSA-201ENST00000298130 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.06■■■□□ 2.56
SPTSSA-201ENST00000298130 NLRP1Q9C000 1473 aa31.06■■■□□ 2.56
SPTSSA-201ENST00000298130 HECW2Q9P2P5 1572 aa31.06■■■□□ 2.56
SPTSSA-201ENST00000298130 BECN1Q14457 450 aa31.05■■■□□ 2.56
SPTSSA-201ENST00000298130 UPF2Q9HAU5 1272 aaKnown RBP31.05■■■□□ 2.56
SPTSSA-201ENST00000298130 CAMSAP1Q5T5Y3 1602 aa31.05■■■□□ 2.56
SPTSSA-201ENST00000298130 NEXMIFQ5QGS0 1516 aa31.04■■■□□ 2.56
SPTSSA-201ENST00000298130 MFAP1P55081 439 aaKnown RBP31.03■■■□□ 2.56
SPTSSA-201ENST00000298130 CABP1Q9NZU7 370 aa31.03■■■□□ 2.56
SPTSSA-201ENST00000298130 ARHGEF28Q8N1W1 1705 aaKnown RBP31.03■■■□□ 2.56
SPTSSA-201ENST00000298130 TBC1D32Q96NH3 1257 aa31.02■■■□□ 2.56
SPTSSA-201ENST00000298130 TBC1D2Q9BYX2 928 aa31.02■■■□□ 2.56
SPTSSA-201ENST00000298130 OSCARQ8IYS5 282 aa31.02■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms