RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 SHPRHQ149N8 1683 aa31.64■■■□□ 2.66
TRIM54-201ENST00000296098 EXOC6Q8TAG9 804 aa31.63■■■□□ 2.65
TRIM54-201ENST00000296098 CGNL1Q0VF96 1302 aa31.63■■■□□ 2.65
TRIM54-201ENST00000296098 ALKQ9UM73 1620 aa31.63■■■□□ 2.65
TRIM54-201ENST00000296098 CCDC146Q8IYE0 955 aa31.63■■■□□ 2.65
TRIM54-201ENST00000296098 YTHDC2Q9H6S0 1430 aaKnown RBP31.62■■■□□ 2.65
TRIM54-201ENST00000296098 GOLGA2Q08379 1002 aa31.61■■■□□ 2.65
TRIM54-201ENST00000296098 STK26Q9P289 416 aa31.61■■■□□ 2.65
TRIM54-201ENST00000296098 NSD2O96028 1365 aa31.6■■■□□ 2.65
TRIM54-201ENST00000296098 NINLQ9Y2I6 1382 aa31.6■■■□□ 2.65
TRIM54-201ENST00000296098 DUSP27Q5VZP5 1158 aa31.59■■■□□ 2.65
TRIM54-201ENST00000296098 STAG3Q9UJ98 1225 aa31.59■■■□□ 2.65
TRIM54-201ENST00000296098 SAFB2Q14151 953 aaKnown RBP eCLIP31.58■■■□□ 2.65
TRIM54-201ENST00000296098 CABP2Q9NPB3 220 aa31.58■■■□□ 2.65
TRIM54-201ENST00000296098 SENP3Q9H4L4 574 aaPredicted RBP31.57■■■□□ 2.64
TRIM54-201ENST00000296098 A2ML1A8K2U0 1454 aa31.56■■■□□ 2.64
TRIM54-201ENST00000296098 APAF1O14727 1248 aa31.56■■■□□ 2.64
TRIM54-201ENST00000296098 NGEFQ8N5V2 710 aa31.54■■■□□ 2.64
TRIM54-201ENST00000296098 FANCIQ9NVI1 1328 aa31.54■■■□□ 2.64
TRIM54-201ENST00000296098 TNNT2P45379 298 aaPredicted RBP31.53■■■□□ 2.64
TRIM54-201ENST00000296098 SLFN5Q08AF3 891 aa31.53■■■□□ 2.64
TRIM54-201ENST00000296098 PLIN1O60240 522 aa31.52■■■□□ 2.64
TRIM54-201ENST00000296098 ATAD2Q6PL18 1390 aa31.52■■■□□ 2.64
TRIM54-201ENST00000296098 PRAM1Q96QH2 718 aa31.51■■■□□ 2.64
TRIM54-201ENST00000296098 SRPK2P78362 688 aaKnown RBP31.51■■■□□ 2.63
TRIM54-201ENST00000296098 A0A1W2PP64 1363 aa31.5■■■□□ 2.63
TRIM54-201ENST00000296098 POGKQ9P215 609 aa31.49■■■□□ 2.63
TRIM54-201ENST00000296098 SETD1AO15047 1707 aaKnown RBP31.49■■■□□ 2.63
TRIM54-201ENST00000296098 MLECQ14165 292 aa31.49■■■□□ 2.63
TRIM54-201ENST00000296098 RIMS2Q9UQ26 1411 aa31.49■■■□□ 2.63
TRIM54-201ENST00000296098 TRMT2AQ8IZ69 625 aaKnown RBP31.48■■■□□ 2.63
TRIM54-201ENST00000296098 ABCC11Q96J66 1382 aa31.48■■■□□ 2.63
TRIM54-201ENST00000296098 MINK1Q8N4C8 1332 aaPredicted RBP31.47■■■□□ 2.63
TRIM54-201ENST00000296098 DLC1Q96QB1 1528 aa31.47■■■□□ 2.63
TRIM54-201ENST00000296098 NKTRP30414 1462 aaKnown RBP31.46■■■□□ 2.63
TRIM54-201ENST00000296098 ANKRD26Q9UPS8 1709 aa31.45■■■□□ 2.63
TRIM54-201ENST00000296098 CFAP53Q96M91 514 aa31.45■■■□□ 2.63
TRIM54-201ENST00000296098 CRBNQ96SW2 442 aa31.44■■■□□ 2.62
TRIM54-201ENST00000296098 IQSEC2Q5JU85 1478 aa31.44■■■□□ 2.62
TRIM54-201ENST00000296098 E9PSI1 815 aa31.43■■■□□ 2.62
TRIM54-201ENST00000296098 MTHFSP49914 203 aa31.43■■■□□ 2.62
TRIM54-201ENST00000296098 CD163L1Q9NR16 1453 aa31.4■■■□□ 2.62
TRIM54-201ENST00000296098 SPINK5Q9NQ38 1064 aaPredicted RBP31.4■■■□□ 2.62
TRIM54-201ENST00000296098 TERF2IPQ9NYB0 399 aa31.39■■■□□ 2.62
TRIM54-201ENST00000296098 RUNDC1Q96C34 613 aa31.39■■■□□ 2.62
TRIM54-201ENST00000296098 GOLGA6L2Q8N9W4 650 aaPredicted RBP31.38■■■□□ 2.61
TRIM54-201ENST00000296098 NRXN3Q9Y4C0 1643 aa31.38■■■□□ 2.61
TRIM54-201ENST00000296098 ESF1Q9H501 851 aaKnown RBP31.37■■■□□ 2.61
TRIM54-201ENST00000296098 MED14O60244 1454 aa31.37■■■□□ 2.61
TRIM54-201ENST00000296098 MYT1Q01538 1121 aa31.36■■■□□ 2.61
TRIM54-201ENST00000296098 C20orf194Q5TEA3 1177 aa31.36■■■□□ 2.61
TRIM54-201ENST00000296098 ZMYM3Q14202 1370 aa31.36■■■□□ 2.61
TRIM54-201ENST00000296098 WWC1Q8IX03 1113 aa31.34■■■□□ 2.61
TRIM54-201ENST00000296098 KIF20BQ96Q89 1820 aa31.34■■■□□ 2.61
TRIM54-201ENST00000296098 ANP32EQ9BTT0 268 aa31.34■■■□□ 2.61
TRIM54-201ENST00000296098 CDK19Q9BWU1 502 aa31.34■■■□□ 2.61
TRIM54-201ENST00000296098 DMRT2Q9Y5R5 561 aa31.34■■■□□ 2.61
TRIM54-201ENST00000296098 NLRP1Q9C000 1473 aa31.33■■■□□ 2.61
TRIM54-201ENST00000296098 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.31■■■□□ 2.6
TRIM54-201ENST00000296098 HDGFL2Q7Z4V5 671 aaPredicted RBP31.31■■■□□ 2.6
TRIM54-201ENST00000296098 MSH5O43196 834 aa31.3■■■□□ 2.6
TRIM54-201ENST00000296098 TCP11L2Q8N4U5 519 aa31.29■■■□□ 2.6
TRIM54-201ENST00000296098 GGNBP2Q9H3C7 697 aa31.29■■■□□ 2.6
TRIM54-201ENST00000296098 ADGRB2O60241 1585 aa31.29■■■□□ 2.6
TRIM54-201ENST00000296098 KNDC1Q76NI1 1749 aa31.27■■■□□ 2.6
TRIM54-201ENST00000296098 COL3A1P02461 1466 aaPredicted RBP31.27■■■□□ 2.6
TRIM54-201ENST00000296098 TNRQ92752 1358 aa31.26■■■□□ 2.6
TRIM54-201ENST00000296098 ATP7BP35670 1465 aa31.26■■■□□ 2.6
TRIM54-201ENST00000296098 PHF23Q9BUL5 403 aaPredicted RBP31.26■■■□□ 2.59
TRIM54-201ENST00000296098 TCERG1O14776 1098 aaKnown RBP31.25■■■□□ 2.59
TRIM54-201ENST00000296098 FYB1O15117 783 aa31.25■■■□□ 2.59
TRIM54-201ENST00000296098 RRP7AQ9Y3A4 280 aaKnown RBP31.25■■■□□ 2.59
TRIM54-201ENST00000296098 WAPLQ7Z5K2 1190 aa31.24■■■□□ 2.59
TRIM54-201ENST00000296098 NEUROD2Q15784 382 aa31.24■■■□□ 2.59
TRIM54-201ENST00000296098 CABP1Q9NZU7 370 aa31.24■■■□□ 2.59
TRIM54-201ENST00000296098 UBR1Q8IWV7 1749 aa31.23■■■□□ 2.59
TRIM54-201ENST00000296098 U2AF1L5P0DN76 240 aaPredicted RBP31.23■■■□□ 2.59
TRIM54-201ENST00000296098 U2AF1Q01081 240 aaKnown RBP eCLIP31.23■■■□□ 2.59
TRIM54-201ENST00000296098 CCDC27Q2M243 656 aa31.22■■■□□ 2.59
TRIM54-201ENST00000296098 NCBP3Q53F19 620 aaKnown RBP31.22■■■□□ 2.59
TRIM54-201ENST00000296098 METP08581 1390 aa31.21■■■□□ 2.59
TRIM54-201ENST00000296098 WDR63Q8IWG1 891 aa31.21■■■□□ 2.59
TRIM54-201ENST00000296098 BCAR3O75815 825 aa31.19■■■□□ 2.58
TRIM54-201ENST00000296098 HDGFP51858 240 aaKnown RBP31.19■■■□□ 2.58
TRIM54-201ENST00000296098 CPS1P31327 1500 aa31.18■■■□□ 2.58
TRIM54-201ENST00000296098 TECPR2O15040 1411 aa31.17■■■□□ 2.58
TRIM54-201ENST00000296098 MS4A1P11836 297 aa31.16■■■□□ 2.58
TRIM54-201ENST00000296098 KDM2BQ8NHM5 1336 aa31.16■■■□□ 2.58
TRIM54-201ENST00000296098 FAM135BQ49AJ0 1406 aa31.16■■■□□ 2.58
TRIM54-201ENST00000296098 TMEM2Q9UHN6 1383 aa31.14■■■□□ 2.58
TRIM54-201ENST00000296098 CENPQQ7L2Z9 268 aaPredicted RBP31.12■■■□□ 2.57
TRIM54-201ENST00000296098 WASLO00401 505 aaPredicted RBP31.12■■■□□ 2.57
TRIM54-201ENST00000296098 U2SURPO15042 1029 aaKnown RBP31.12■■■□□ 2.57
TRIM54-201ENST00000296098 PPIP5K1Q6PFW1 1433 aa31.11■■■□□ 2.57
TRIM54-201ENST00000296098 PNPLA6Q8IY17 1366 aa31.11■■■□□ 2.57
TRIM54-201ENST00000296098 SIRT1Q96EB6 747 aa31.1■■■□□ 2.57
TRIM54-201ENST00000296098 CDC42BPGQ6DT37 1551 aa31.09■■■□□ 2.57
TRIM54-201ENST00000296098 CPSF1Q10570 1443 aaKnown RBP31.09■■■□□ 2.57
TRIM54-201ENST00000296098 EDC4Q6P2E9 1401 aaKnown RBP31.09■■■□□ 2.57
TRIM54-201ENST00000296098 ERICH6Q7L0X2 663 aa31.08■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms