RNA–Protein interactions for RNA: ENST00000291547.9

PKNOX1-201, Transcript of PBX/knotted 1 homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PKNOX1, Length 5,003 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-201ENST00000291547 RAPGEF3O95398 923 aa13.12□□□□□ -0.31
PKNOX1-201ENST00000291547 BCL2L13Q9BXK5 485 aa13.12□□□□□ -0.31
PKNOX1-201ENST00000291547 CHMP5Q9NZZ3 219 aa13.12□□□□□ -0.31
PKNOX1-201ENST00000291547 RRP12Q5JTH9 1297 aaKnown RBP13.12□□□□□ -0.31
PKNOX1-201ENST00000291547 CHMP4CQ96CF2 233 aa13.12□□□□□ -0.31
PKNOX1-201ENST00000291547 ASXL2Q76L83 1435 aa13.11□□□□□ -0.31
PKNOX1-201ENST00000291547 CHD1O14646 1710 aa13.11□□□□□ -0.31
PKNOX1-201ENST00000291547 LMOD3Q0VAK6 560 aa13.11□□□□□ -0.31
PKNOX1-201ENST00000291547 ADGRL1O94910 1474 aa13.1□□□□□ -0.31
PKNOX1-201ENST00000291547 RRP7AQ9Y3A4 280 aaKnown RBP13.1□□□□□ -0.31
PKNOX1-201ENST00000291547 FRAT2O75474 233 aaPredicted RBP13.09□□□□□ -0.31
PKNOX1-201ENST00000291547 AKAP17AQ02040 695 aaKnown RBP13.09□□□□□ -0.31
PKNOX1-201ENST00000291547 PCMTD1Q96MG8 357 aaPredicted RBP13.09□□□□□ -0.31
PKNOX1-201ENST00000291547 PDCL3Q9H2J4 239 aa13.09□□□□□ -0.31
PKNOX1-201ENST00000291547 AKNAQ7Z591 1439 aa13.09□□□□□ -0.31
PKNOX1-201ENST00000291547 ELL2O00472 640 aaPredicted RBP13.09□□□□□ -0.31
PKNOX1-201ENST00000291547 CRBNQ96SW2 442 aa13.09□□□□□ -0.31
PKNOX1-201ENST00000291547 ARGLU1Q9NWB6 273 aaPredicted RBP13.09□□□□□ -0.31
PKNOX1-201ENST00000291547 WDR7Q9Y4E6 1490 aa13.09□□□□□ -0.31
PKNOX1-201ENST00000291547 NOM1Q5C9Z4 860 aaKnown RBP13.08□□□□□ -0.31
PKNOX1-201ENST00000291547 TAF3Q5VWG9 929 aa13.08□□□□□ -0.31
PKNOX1-201ENST00000291547 BICD2Q8TD16 824 aa13.08□□□□□ -0.31
PKNOX1-201ENST00000291547 TMX4Q9H1E5 349 aaPredicted RBP13.08□□□□□ -0.31
PKNOX1-201ENST00000291547 RRP1P56182 461 aaKnown RBP13.08□□□□□ -0.32
PKNOX1-201ENST00000291547 CPLX2Q6PUV4 134 aaKnown RBP13.08□□□□□ -0.32
PKNOX1-201ENST00000291547 MNS1Q8NEH6 495 aa13.08□□□□□ -0.32
PKNOX1-201ENST00000291547 FANCAO15360 1455 aa13.08□□□□□ -0.32
PKNOX1-201ENST00000291547 COG6Q9Y2V7 657 aa13.08□□□□□ -0.32
PKNOX1-201ENST00000291547 ITSN2Q9NZM3 1697 aa13.08□□□□□ -0.32
PKNOX1-201ENST00000291547 IFT57Q9NWB7 429 aa13.08□□□□□ -0.32
PKNOX1-201ENST00000291547 TERF2IPQ9NYB0 399 aa13.08□□□□□ -0.32
PKNOX1-201ENST00000291547 FBXO3Q9UK99 471 aa13.08□□□□□ -0.32
PKNOX1-201ENST00000291547 ANKRD20A12PQ8NF67 263 aa13.07□□□□□ -0.32
PKNOX1-201ENST00000291547 CCDC9Q9Y3X0 531 aaKnown RBP13.07□□□□□ -0.32
PKNOX1-201ENST00000291547 ZBED9Q6R2W3 1325 aa13.07□□□□□ -0.32
PKNOX1-201ENST00000291547 REC8O95072 547 aa13.07□□□□□ -0.32
PKNOX1-201ENST00000291547 HSP90B2PQ58FF3 399 aa13.07□□□□□ -0.32
PKNOX1-201ENST00000291547 ZKSCAN2Q63HK3 967 aa13.07□□□□□ -0.32
PKNOX1-201ENST00000291547 WASHC2AQ641Q2 1341 aa13.07□□□□□ -0.32
PKNOX1-201ENST00000291547 DIAPH3Q9NSV4 1193 aa13.07□□□□□ -0.32
PKNOX1-201ENST00000291547 R3HCC1Q9Y3T6 440 aaKnown RBP13.07□□□□□ -0.32
PKNOX1-201ENST00000291547 PLCH2O75038 1416 aa13.07□□□□□ -0.32
PKNOX1-201ENST00000291547 CGNL1Q0VF96 1302 aa13.07□□□□□ -0.32
PKNOX1-201ENST00000291547 PDIA4P13667 645 aaKnown RBP13.06□□□□□ -0.32
PKNOX1-201ENST00000291547 RUFY1Q96T51 708 aa13.06□□□□□ -0.32
PKNOX1-201ENST00000291547 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.06□□□□□ -0.32
PKNOX1-201ENST00000291547 ZKSCAN1P17029 563 aaPredicted RBP13.05□□□□□ -0.32
PKNOX1-201ENST00000291547 SYNE3Q6ZMZ3 975 aa13.05□□□□□ -0.32
PKNOX1-201ENST00000291547 ACBD3Q9H3P7 528 aa13.05□□□□□ -0.32
PKNOX1-201ENST00000291547 CDR1P51861 262 aa13.05□□□□□ -0.32
PKNOX1-201ENST00000291547 NCOA1Q15788 1441 aa13.05□□□□□ -0.32
PKNOX1-201ENST00000291547 NUTM2DQ5VT03 806 aaPredicted RBP13.04□□□□□ -0.32
PKNOX1-201ENST00000291547 AK7Q96M32 723 aa13.04□□□□□ -0.32
PKNOX1-201ENST00000291547 KIAA1107Q9UPP5 1409 aa13.04□□□□□ -0.32
PKNOX1-201ENST00000291547 VPS37CA5D8V6 355 aaPredicted RBP13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 BCL11BQ9C0K0 894 aaPredicted RBP13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 TRIM29Q14134 588 aa13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 SASS6Q6UVJ0 657 aa13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 MYBBP1AQ9BQG0 1328 aaKnown RBP13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 G3V3G9 751 aa13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 DCAF8Q5TAQ9 597 aa13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 RUFY2Q8WXA3 655 aa13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 EIF3AQ14152 1382 aaKnown RBP13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 E9PSI1 815 aa13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 CPLX1O14810 134 aa13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 NUCB2P80303 420 aa13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 RBM10P98175 930 aaKnown RBP13.03□□□□□ -0.32
PKNOX1-201ENST00000291547 CCDC47Q96A33 483 aaKnown RBP13.02□□□□□ -0.32
PKNOX1-201ENST00000291547 GTF2E1P29083 439 aaPredicted RBP13.02□□□□□ -0.32
PKNOX1-201ENST00000291547 H0YHG0 523 aa13.02□□□□□ -0.33
PKNOX1-201ENST00000291547 MRE11P49959 708 aa13.02□□□□□ -0.33
PKNOX1-201ENST00000291547 FBXW7Q969H0 707 aa13.02□□□□□ -0.33
PKNOX1-201ENST00000291547 AMPHP49418 695 aa13.02□□□□□ -0.33
PKNOX1-201ENST00000291547 EID1Q9Y6B2 187 aa13.02□□□□□ -0.33
PKNOX1-201ENST00000291547 VGFO15240 615 aaPredicted RBP13.01□□□□□ -0.33
PKNOX1-201ENST00000291547 LTV1Q96GA3 475 aaPredicted RBP13.01□□□□□ -0.33
PKNOX1-201ENST00000291547 TCOF1Q13428 1488 aaKnown RBP13.01□□□□□ -0.33
PKNOX1-201ENST00000291547 ANO2Q9NQ90 1003 aa13.01□□□□□ -0.33
PKNOX1-201ENST00000291547 HOOK1Q9UJC3 728 aaKnown RBP13.01□□□□□ -0.33
PKNOX1-201ENST00000291547 DENND4BO75064 1496 aaPredicted RBP13.01□□□□□ -0.33
PKNOX1-201ENST00000291547 NASPP49321 788 aaPredicted RBP13□□□□□ -0.33
PKNOX1-201ENST00000291547 SMC3Q9UQE7 1217 aa13□□□□□ -0.33
PKNOX1-201ENST00000291547 ABCA8O94911 1581 aa13□□□□□ -0.33
PKNOX1-201ENST00000291547 CCDC66A2RUB6 948 aa13□□□□□ -0.33
PKNOX1-201ENST00000291547 APPP05067 770 aa13□□□□□ -0.33
PKNOX1-201ENST00000291547 CCDC73Q6ZRK6 1079 aa13□□□□□ -0.33
PKNOX1-201ENST00000291547 CCDC191Q8NCU4 936 aa13□□□□□ -0.33
PKNOX1-201ENST00000291547 PTPRKQ15262 1439 aa12.99□□□□□ -0.33
PKNOX1-201ENST00000291547 RNF214Q8ND24 703 aa12.99□□□□□ -0.33
PKNOX1-201ENST00000291547 CWC15Q9P013 229 aaKnown RBP12.99□□□□□ -0.33
PKNOX1-201ENST00000291547 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.99□□□□□ -0.33
PKNOX1-201ENST00000291547 PRKRIP1Q9H875 184 aaPredicted RBP12.99□□□□□ -0.33
PKNOX1-201ENST00000291547 NAP1L1P55209 391 aaKnown RBP12.99□□□□□ -0.33
PKNOX1-201ENST00000291547 CCDC39Q9UFE4 941 aa12.99□□□□□ -0.33
PKNOX1-201ENST00000291547 STAC3Q96MF2 364 aa12.98□□□□□ -0.33
PKNOX1-201ENST00000291547 LRRFIP1Q32MZ4 808 aaKnown RBP12.98□□□□□ -0.33
PKNOX1-201ENST00000291547 DDX19BQ9UMR2 479 aa12.98□□□□□ -0.33
PKNOX1-201ENST00000291547 SYCP2Q9BX26 1530 aa12.98□□□□□ -0.33
PKNOX1-201ENST00000291547 PANK3Q9H999 370 aa12.98□□□□□ -0.33
PKNOX1-201ENST00000291547 NGDNQ8NEJ9 315 aaKnown RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms