RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 MYO15BQ96JP2 1530 aa7.54□□□□□ -1.2
CD44-202ENST00000278385 NUTM2BA6NNL0 878 aaPredicted RBP7.54□□□□□ -1.2
CD44-202ENST00000278385 NUTM2EB1AL46 878 aaPredicted RBP7.54□□□□□ -1.2
CD44-202ENST00000278385 C6orf229H3BNL8 230 aa7.54□□□□□ -1.2
CD44-202ENST00000278385 GJA5P36382 358 aa7.54□□□□□ -1.2
CD44-202ENST00000278385 TJAP1Q5JTD0 557 aa7.54□□□□□ -1.2
CD44-202ENST00000278385 NUTM2DQ5VT03 806 aaPredicted RBP7.54□□□□□ -1.2
CD44-202ENST00000278385 RIC3Q7Z5B4 369 aa7.54□□□□□ -1.2
CD44-202ENST00000278385 NUTM2AQ8IVF1 878 aaPredicted RBP7.54□□□□□ -1.2
CD44-202ENST00000278385 PCMTD1Q96MG8 357 aaPredicted RBP7.54□□□□□ -1.2
CD44-202ENST00000278385 SPSB2Q99619 263 aa7.54□□□□□ -1.2
CD44-202ENST00000278385 SLC27A5Q9Y2P5 690 aa7.54□□□□□ -1.2
CD44-202ENST00000278385 SPDYE5A6NIY4 337 aa7.53□□□□□ -1.2
CD44-202ENST00000278385 SALL2Q9Y467 1007 aaPredicted RBP7.53□□□□□ -1.2
CD44-202ENST00000278385 MOXD2PA6NHM9 499 aa7.52□□□□□ -1.21
CD44-202ENST00000278385 CLK2P49760 499 aaKnown RBP7.52□□□□□ -1.21
CD44-202ENST00000278385 SKIV2LQ15477 1246 aaKnown RBP7.52□□□□□ -1.21
CD44-202ENST00000278385 POLR3EQ9NVU0 708 aa7.52□□□□□ -1.21
CD44-202ENST00000278385 ADH1BP00325 375 aa7.51□□□□□ -1.21
CD44-202ENST00000278385 NDUFV2P19404 249 aa7.51□□□□□ -1.21
CD44-202ENST00000278385 CSPP1Q1MSJ5 1256 aa7.51□□□□□ -1.21
CD44-202ENST00000278385 IFFO2Q5TF58 517 aa7.51□□□□□ -1.21
CD44-202ENST00000278385 MYSM1Q5VVJ2 828 aa7.51□□□□□ -1.21
CD44-202ENST00000278385 ZNF516Q92618 1163 aa7.51□□□□□ -1.21
CD44-202ENST00000278385 USB1Q9BQ65 265 aaKnown RBP7.51□□□□□ -1.21
CD44-202ENST00000278385 SLC6A16Q9GZN6 736 aa7.51□□□□□ -1.21
CD44-202ENST00000278385 ZBTB3Q9H5J0 574 aa7.51□□□□□ -1.21
CD44-202ENST00000278385 SPTLC1O15269 473 aa7.5□□□□□ -1.21
CD44-202ENST00000278385 MTMR2Q13614 643 aa7.5□□□□□ -1.21
CD44-202ENST00000278385 SH3D19Q5HYK7 790 aa7.5□□□□□ -1.21
CD44-202ENST00000278385 RSBN1LQ6PCB5 846 aaPredicted RBP7.5□□□□□ -1.21
CD44-202ENST00000278385 RETREG3Q86VR2 466 aa7.49□□□□□ -1.21
CD44-202ENST00000278385 GOPCQ9HD26 462 aa7.49□□□□□ -1.21
CD44-202ENST00000278385 GUCA2AQ02747 115 aa7.48□□□□□ -1.21
CD44-202ENST00000278385 PRPF38BQ5VTL8 546 aaKnown RBP7.48□□□□□ -1.21
CD44-202ENST00000278385 BRICD5Q6PL45 260 aa7.48□□□□□ -1.21
CD44-202ENST00000278385 TSC1Q92574 1164 aa7.48□□□□□ -1.21
CD44-202ENST00000278385 TLL1O43897 1013 aa7.47□□□□□ -1.21
CD44-202ENST00000278385 HELBQ8NG08 1087 aaPredicted RBP7.47□□□□□ -1.21
CD44-202ENST00000278385 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.47□□□□□ -1.21
CD44-202ENST00000278385 ZCCHC6Q5VYS8 1495 aaKnown RBP7.47□□□□□ -1.21
CD44-202ENST00000278385 TUSC1Q2TAM9 212 aa7.46□□□□□ -1.22
CD44-202ENST00000278385 NKX2-3Q8TAU0 364 aa7.46□□□□□ -1.22
CD44-202ENST00000278385 HLA-CQ95604 372 aa7.46□□□□□ -1.22
CD44-202ENST00000278385 DCAF1Q9Y4B6 1507 aa7.46□□□□□ -1.22
CD44-202ENST00000278385 PLEKHG3A1L390 1219 aa7.45□□□□□ -1.22
CD44-202ENST00000278385 ZBTB24O43167 697 aaPredicted RBP7.45□□□□□ -1.22
CD44-202ENST00000278385 MSS51Q4VC12 460 aa7.45□□□□□ -1.22
CD44-202ENST00000278385 RNF19BQ6ZMZ0 732 aa7.45□□□□□ -1.22
CD44-202ENST00000278385 S1PR4O95977 384 aa7.44□□□□□ -1.22
CD44-202ENST00000278385 PPP1R18Q6NYC8 613 aa7.44□□□□□ -1.22
CD44-202ENST00000278385 PRR7Q8TB68 274 aa7.44□□□□□ -1.22
CD44-202ENST00000278385 SYMPKQ92797 1274 aaKnown RBP7.44□□□□□ -1.22
CD44-202ENST00000278385 THAP11Q96EK4 314 aa7.44□□□□□ -1.22
CD44-202ENST00000278385 LIMD1Q9UGP4 676 aa7.44□□□□□ -1.22
CD44-202ENST00000278385 PCDHGC3Q9UN70 934 aa7.44□□□□□ -1.22
CD44-202ENST00000278385 A0A0G2JS52 829 aa7.43□□□□□ -1.22
CD44-202ENST00000278385 CCDC24Q8N4L8 307 aa7.43□□□□□ -1.22
CD44-202ENST00000278385 JUNDP17535 347 aa7.42□□□□□ -1.22
CD44-202ENST00000278385 CCDC9Q9Y3X0 531 aaKnown RBP7.42□□□□□ -1.22
CD44-202ENST00000278385 PCDHB15Q9Y5E8 787 aa7.42□□□□□ -1.22
CD44-202ENST00000278385 ANKLE1Q8NAG6 615 aa7.41□□□□□ -1.22
CD44-202ENST00000278385 PROCA1Q8NCQ7 364 aaPredicted RBP7.41□□□□□ -1.22
CD44-202ENST00000278385 CABLES1Q8TDN4 633 aa7.41□□□□□ -1.22
CD44-202ENST00000278385 LILRB3O75022 631 aa7.4□□□□□ -1.22
CD44-202ENST00000278385 RGS20O76081 388 aa7.4□□□□□ -1.22
CD44-202ENST00000278385 TMEM259Q4ZIN3 620 aa7.4□□□□□ -1.22
CD44-202ENST00000278385 DESI1Q6ICB0 168 aa7.4□□□□□ -1.22
CD44-202ENST00000278385 FAM160A2Q8N612 972 aaPredicted RBP7.4□□□□□ -1.22
CD44-202ENST00000278385 LOC105371045A0A1W2PR82 267 aa7.39□□□□□ -1.23
CD44-202ENST00000278385 RNF223E7ERA6 249 aa7.39□□□□□ -1.23
CD44-202ENST00000278385 EIF5BO60841 1220 aaKnown RBP7.39□□□□□ -1.23
CD44-202ENST00000278385 MMP16P51512 607 aa7.39□□□□□ -1.23
CD44-202ENST00000278385 QPCTQ16769 361 aa7.39□□□□□ -1.23
CD44-202ENST00000278385 PNMA1Q8ND90 353 aa7.39□□□□□ -1.23
CD44-202ENST00000278385 FCF1Q9Y324 198 aaKnown RBP7.39□□□□□ -1.23
CD44-202ENST00000278385 APBB1O00213 710 aa7.38□□□□□ -1.23
CD44-202ENST00000278385 AP1G2O75843 785 aa7.38□□□□□ -1.23
CD44-202ENST00000278385 DXOO77932 396 aaKnown RBP7.38□□□□□ -1.23
CD44-202ENST00000278385 CD2BP2O95400 341 aaKnown RBP7.38□□□□□ -1.23
CD44-202ENST00000278385 CTHP32929 405 aa7.38□□□□□ -1.23
CD44-202ENST00000278385 NUDT12Q9BQG2 462 aa7.38□□□□□ -1.23
CD44-202ENST00000278385 ZMYND15Q9H091 742 aa7.38□□□□□ -1.23
CD44-202ENST00000278385 CCNYL3P0C7X3 344 aa7.37□□□□□ -1.23
CD44-202ENST00000278385 PTPRNQ16849 979 aa7.37□□□□□ -1.23
CD44-202ENST00000278385 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.37□□□□□ -1.23
CD44-202ENST00000278385 PRDM9Q9NQV7 894 aa7.37□□□□□ -1.23
CD44-202ENST00000278385 PPEF1O14829 653 aaPredicted RBP7.36□□□□□ -1.23
CD44-202ENST00000278385 RTL5Q5HYW3 569 aaPredicted RBP7.36□□□□□ -1.23
CD44-202ENST00000278385 PPP2R2DQ66LE6 453 aa7.36□□□□□ -1.23
CD44-202ENST00000278385 PRM3Q9NNZ6 103 aa7.36□□□□□ -1.23
CD44-202ENST00000278385 CFAP99D6REC4 459 aa7.35□□□□□ -1.23
CD44-202ENST00000278385 RFC5P40937 340 aa7.35□□□□□ -1.23
CD44-202ENST00000278385 SLC19A1P41440 591 aa7.35□□□□□ -1.23
CD44-202ENST00000278385 PRKD2Q9BZL6 878 aa7.35□□□□□ -1.23
CD44-202ENST00000278385 BICRAQ9NZM4 1560 aa7.34□□□□□ -1.23
CD44-202ENST00000278385 ZBTB7CA1YPR0 619 aa7.34□□□□□ -1.23
CD44-202ENST00000278385 LYPD8Q6UX82 237 aa7.34□□□□□ -1.23
CD44-202ENST00000278385 ARMC2Q8NEN0 867 aa7.34□□□□□ -1.23
CD44-202ENST00000278385 V9GY48 417 aaPredicted RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms