RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 ABCC11Q96J66 1382 aa12.81□□□□□ -0.36
TRIM55-201ENST00000276573 SRPK2P78362 688 aaKnown RBP12.81□□□□□ -0.36
TRIM55-201ENST00000276573 PDE3BQ13370 1112 aa12.81□□□□□ -0.36
TRIM55-201ENST00000276573 ERICH6BQ5W0A0 696 aa12.81□□□□□ -0.36
TRIM55-201ENST00000276573 CEBPAP49715 358 aaPredicted RBP12.8□□□□□ -0.36
TRIM55-201ENST00000276573 WDR43Q15061 677 aaKnown RBP eCLIP12.8□□□□□ -0.36
TRIM55-201ENST00000276573 MORC1Q86VD1 984 aa12.8□□□□□ -0.36
TRIM55-201ENST00000276573 DLC1Q96QB1 1528 aa12.8□□□□□ -0.36
TRIM55-201ENST00000276573 CDK19Q9BWU1 502 aa12.8□□□□□ -0.36
TRIM55-201ENST00000276573 SALL2Q9Y467 1007 aaPredicted RBP12.8□□□□□ -0.36
TRIM55-201ENST00000276573 TMEM2Q9UHN6 1383 aa12.79□□□□□ -0.36
TRIM55-201ENST00000276573 NINLQ9Y2I6 1382 aa12.79□□□□□ -0.36
TRIM55-201ENST00000276573 IRX6P78412 446 aaPredicted RBP12.79□□□□□ -0.36
TRIM55-201ENST00000276573 SETD1AO15047 1707 aaKnown RBP12.79□□□□□ -0.36
TRIM55-201ENST00000276573 ATAD2Q6PL18 1390 aa12.79□□□□□ -0.36
TRIM55-201ENST00000276573 CGNL1Q0VF96 1302 aa12.78□□□□□ -0.36
TRIM55-201ENST00000276573 WAPLQ7Z5K2 1190 aa12.78□□□□□ -0.36
TRIM55-201ENST00000276573 PELP1Q8IZL8 1130 aaKnown RBP12.78□□□□□ -0.36
TRIM55-201ENST00000276573 SIRT1Q96EB6 747 aa12.78□□□□□ -0.36
TRIM55-201ENST00000276573 METP08581 1390 aa12.77□□□□□ -0.36
TRIM55-201ENST00000276573 NRXN3Q9Y4C0 1643 aa12.77□□□□□ -0.36
TRIM55-201ENST00000276573 UBR1Q8IWV7 1749 aa12.77□□□□□ -0.36
TRIM55-201ENST00000276573 NLRP1Q9C000 1473 aa12.77□□□□□ -0.36
TRIM55-201ENST00000276573 USP32Q8NFA0 1604 aa12.77□□□□□ -0.37
TRIM55-201ENST00000276573 RNF123Q5XPI4 1314 aa12.77□□□□□ -0.37
TRIM55-201ENST00000276573 POLR3AO14802 1390 aaPredicted RBP12.76□□□□□ -0.37
TRIM55-201ENST00000276573 PLEKHH1Q9ULM0 1364 aa12.76□□□□□ -0.37
TRIM55-201ENST00000276573 TERF2IPQ9NYB0 399 aa12.76□□□□□ -0.37
TRIM55-201ENST00000276573 NSD2O96028 1365 aa12.75□□□□□ -0.37
TRIM55-201ENST00000276573 LTKP29376 864 aa12.75□□□□□ -0.37
TRIM55-201ENST00000276573 A0A1W2PP64 1363 aa12.74□□□□□ -0.37
TRIM55-201ENST00000276573 TXNDC2Q86VQ3 553 aa12.74□□□□□ -0.37
TRIM55-201ENST00000276573 C3P01024 1663 aa12.74□□□□□ -0.37
TRIM55-201ENST00000276573 TNNT2P45379 298 aaPredicted RBP12.74□□□□□ -0.37
TRIM55-201ENST00000276573 CDCA7LQ96GN5 454 aa12.74□□□□□ -0.37
TRIM55-201ENST00000276573 HDGFL2Q7Z4V5 671 aaPredicted RBP12.73□□□□□ -0.37
TRIM55-201ENST00000276573 CABP1Q9NZU7 370 aa12.73□□□□□ -0.37
TRIM55-201ENST00000276573 FAM135BQ49AJ0 1406 aa12.72□□□□□ -0.37
TRIM55-201ENST00000276573 PPP4R2Q9NY27 417 aa12.72□□□□□ -0.37
TRIM55-201ENST00000276573 CD163L1Q9NR16 1453 aa12.72□□□□□ -0.37
TRIM55-201ENST00000276573 PLEKHG1Q9ULL1 1385 aa12.72□□□□□ -0.37
TRIM55-201ENST00000276573 TECPR2O15040 1411 aa12.72□□□□□ -0.37
TRIM55-201ENST00000276573 ADAMTS13Q76LX8 1427 aa12.72□□□□□ -0.37
TRIM55-201ENST00000276573 WASLO00401 505 aaPredicted RBP12.72□□□□□ -0.37
TRIM55-201ENST00000276573 MTHFSP49914 203 aa12.72□□□□□ -0.37
TRIM55-201ENST00000276573 EID1Q9Y6B2 187 aa12.72□□□□□ -0.37
TRIM55-201ENST00000276573 PLPPR3Q6T4P5 718 aa12.71□□□□□ -0.37
TRIM55-201ENST00000276573 FER1L4A9Z1Z3 1794 aa12.71□□□□□ -0.37
TRIM55-201ENST00000276573 FYB1O15117 783 aa12.7□□□□□ -0.38
TRIM55-201ENST00000276573 THEMISQ8N1K5 641 aaPredicted RBP12.7□□□□□ -0.38
TRIM55-201ENST00000276573 CCDC146Q8IYE0 955 aa12.7□□□□□ -0.38
TRIM55-201ENST00000276573 CFAP53Q96M91 514 aa12.69□□□□□ -0.38
TRIM55-201ENST00000276573 GGNBP2Q9H3C7 697 aa12.69□□□□□ -0.38
TRIM55-201ENST00000276573 RCAN3Q9UKA8 241 aa12.69□□□□□ -0.38
TRIM55-201ENST00000276573 ZNF521Q96K83 1311 aa12.69□□□□□ -0.38
TRIM55-201ENST00000276573 ARHGAP23Q9P227 1491 aa12.69□□□□□ -0.38
TRIM55-201ENST00000276573 KNDC1Q76NI1 1749 aa12.69□□□□□ -0.38
TRIM55-201ENST00000276573 APAF1O14727 1248 aa12.69□□□□□ -0.38
TRIM55-201ENST00000276573 MED14O60244 1454 aa12.68□□□□□ -0.38
TRIM55-201ENST00000276573 SLIT1O75093 1534 aa12.68□□□□□ -0.38
TRIM55-201ENST00000276573 NGEFQ8N5V2 710 aa12.68□□□□□ -0.38
TRIM55-201ENST00000276573 CPS1P31327 1500 aa12.67□□□□□ -0.38
TRIM55-201ENST00000276573 NUDT16Q96DE0 195 aaKnown RBP12.67□□□□□ -0.38
TRIM55-201ENST00000276573 SLC26A8Q96RN1 970 aa12.67□□□□□ -0.38
TRIM55-201ENST00000276573 TBX22Q9Y458 520 aa12.67□□□□□ -0.38
TRIM55-201ENST00000276573 ROBO2Q9HCK4 1378 aa12.67□□□□□ -0.38
TRIM55-201ENST00000276573 GOLGA2Q08379 1002 aa12.67□□□□□ -0.38
TRIM55-201ENST00000276573 ATP7BP35670 1465 aa12.66□□□□□ -0.38
TRIM55-201ENST00000276573 SHPRHQ149N8 1683 aa12.65□□□□□ -0.38
TRIM55-201ENST00000276573 RRP1P56182 461 aaKnown RBP12.65□□□□□ -0.38
TRIM55-201ENST00000276573 CCDC61Q9Y6R9 512 aa12.65□□□□□ -0.38
TRIM55-201ENST00000276573 SLFN5Q08AF3 891 aa12.65□□□□□ -0.38
TRIM55-201ENST00000276573 DUSP27Q5VZP5 1158 aa12.65□□□□□ -0.38
TRIM55-201ENST00000276573 RUNDC1Q96C34 613 aa12.65□□□□□ -0.38
TRIM55-201ENST00000276573 CPSF1Q10570 1443 aaKnown RBP12.64□□□□□ -0.39
TRIM55-201ENST00000276573 PPIP5K1Q6PFW1 1433 aa12.64□□□□□ -0.39
TRIM55-201ENST00000276573 PTPRUQ92729 1446 aa12.64□□□□□ -0.39
TRIM55-201ENST00000276573 TRMT2AQ8IZ69 625 aaKnown RBP12.64□□□□□ -0.39
TRIM55-201ENST00000276573 AMOTL2Q9Y2J4 779 aa12.63□□□□□ -0.39
TRIM55-201ENST00000276573 ANKRD26Q9UPS8 1709 aa12.63□□□□□ -0.39
TRIM55-201ENST00000276573 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.63□□□□□ -0.39
TRIM55-201ENST00000276573 NCKAP5LQ9HCH0 1330 aa12.62□□□□□ -0.39
TRIM55-201ENST00000276573 ZNF692Q9BU19 519 aaPredicted RBP12.62□□□□□ -0.39
TRIM55-201ENST00000276573 PRR36Q9H6K5 1346 aa12.62□□□□□ -0.39
TRIM55-201ENST00000276573 B4GALNT3Q6L9W6 998 aa12.61□□□□□ -0.39
TRIM55-201ENST00000276573 TSHZ2Q9NRE2 1034 aa12.61□□□□□ -0.39
TRIM55-201ENST00000276573 EDC4Q6P2E9 1401 aaKnown RBP12.61□□□□□ -0.39
TRIM55-201ENST00000276573 TCP11L2Q8N4U5 519 aa12.61□□□□□ -0.39
TRIM55-201ENST00000276573 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.61□□□□□ -0.39
TRIM55-201ENST00000276573 U2AF1L5P0DN76 240 aaPredicted RBP12.6□□□□□ -0.39
TRIM55-201ENST00000276573 U2AF1Q01081 240 aaKnown RBP eCLIP12.6□□□□□ -0.39
TRIM55-201ENST00000276573 NCBP3Q53F19 620 aaKnown RBP12.6□□□□□ -0.39
TRIM55-201ENST00000276573 WWC1Q8IX03 1113 aa12.6□□□□□ -0.39
TRIM55-201ENST00000276573 SPINK5Q9NQ38 1064 aaPredicted RBP12.6□□□□□ -0.39
TRIM55-201ENST00000276573 RIMS1Q86UR5 1692 aaKnown RBP12.6□□□□□ -0.39
TRIM55-201ENST00000276573 KIF20BQ96Q89 1820 aa12.6□□□□□ -0.39
TRIM55-201ENST00000276573 E9PSI1 815 aa12.6□□□□□ -0.39
TRIM55-201ENST00000276573 ADGRB2O60241 1585 aa12.59□□□□□ -0.39
TRIM55-201ENST00000276573 PNPLA6Q8IY17 1366 aa12.59□□□□□ -0.39
TRIM55-201ENST00000276573 PLEKHG3A1L390 1219 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms