RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 CTDP1Q9Y5B0 961 aaPredicted RBP9.62□□□□□ -0.87
LIMD1-201ENST00000273317 ERICH3Q5RHP9 1530 aa9.62□□□□□ -0.87
LIMD1-201ENST00000273317 PDCP20941 246 aa9.61□□□□□ -0.87
LIMD1-201ENST00000273317 NFXL1Q6ZNB6 911 aa9.61□□□□□ -0.87
LIMD1-201ENST00000273317 TEFQ10587 303 aa9.61□□□□□ -0.87
LIMD1-201ENST00000273317 APPP05067 770 aa9.61□□□□□ -0.87
LIMD1-201ENST00000273317 PIP4K2AP48426 406 aaPredicted RBP9.61□□□□□ -0.87
LIMD1-201ENST00000273317 HECW1Q76N89 1606 aa9.61□□□□□ -0.87
LIMD1-201ENST00000273317 FOXD4L6Q3SYB3 417 aaPredicted RBP9.61□□□□□ -0.87
LIMD1-201ENST00000273317 FOXD4L3Q6VB84 417 aaPredicted RBP9.61□□□□□ -0.87
LIMD1-201ENST00000273317 CCDC43Q96MW1 224 aaKnown RBP9.61□□□□□ -0.87
LIMD1-201ENST00000273317 MCM2P49736 904 aa9.61□□□□□ -0.87
LIMD1-201ENST00000273317 TXLNBQ8N3L3 684 aa9.61□□□□□ -0.87
LIMD1-201ENST00000273317 GNAI1P63096 354 aa9.61□□□□□ -0.87
LIMD1-201ENST00000273317 FBXW7Q969H0 707 aa9.6□□□□□ -0.87
LIMD1-201ENST00000273317 KAT6BQ8WYB5 2073 aa9.6□□□□□ -0.87
LIMD1-201ENST00000273317 CAGE1Q8TC20 777 aa9.6□□□□□ -0.87
LIMD1-201ENST00000273317 EPS15P42566 896 aa9.6□□□□□ -0.87
LIMD1-201ENST00000273317 HIP1O00291 1037 aa9.6□□□□□ -0.87
LIMD1-201ENST00000273317 XBP1P17861 261 aa9.6□□□□□ -0.87
LIMD1-201ENST00000273317 FGD6Q6ZV73 1430 aa9.6□□□□□ -0.87
LIMD1-201ENST00000273317 VPS37CA5D8V6 355 aaPredicted RBP9.6□□□□□ -0.87
LIMD1-201ENST00000273317 DIAPH1O60610 1272 aaKnown RBP9.6□□□□□ -0.87
LIMD1-201ENST00000273317 PLCD4Q9BRC7 762 aa9.6□□□□□ -0.87
LIMD1-201ENST00000273317 CT47A1Q5JQC4 288 aaPredicted RBP9.59□□□□□ -0.87
LIMD1-201ENST00000273317 COG6Q9Y2V7 657 aa9.59□□□□□ -0.87
LIMD1-201ENST00000273317 VPS37DQ86XT2 251 aa9.59□□□□□ -0.87
LIMD1-201ENST00000273317 EFCAB5A4FU69 1503 aa9.59□□□□□ -0.87
LIMD1-201ENST00000273317 NAP1L1P55209 391 aaKnown RBP9.59□□□□□ -0.87
LIMD1-201ENST00000273317 CCDC7Q96M83 1385 aa9.59□□□□□ -0.87
LIMD1-201ENST00000273317 EHBP1L1Q8N3D4 1523 aa9.58□□□□□ -0.88
LIMD1-201ENST00000273317 HNRNPMP52272 730 aaKnown RBP eCLIP9.58□□□□□ -0.88
LIMD1-201ENST00000273317 SMARCE1Q969G3 411 aa9.58□□□□□ -0.88
LIMD1-201ENST00000273317 RALYLQ86SE5 291 aaKnown RBP9.58□□□□□ -0.88
LIMD1-201ENST00000273317 TSPY26PQ9H489 355 aa9.58□□□□□ -0.88
LIMD1-201ENST00000273317 LTV1Q96GA3 475 aaPredicted RBP9.58□□□□□ -0.88
LIMD1-201ENST00000273317 CADPSQ9ULU8 1353 aa9.58□□□□□ -0.88
LIMD1-201ENST00000273317 RABEP1Q15276 862 aa9.58□□□□□ -0.88
LIMD1-201ENST00000273317 PKNOX2Q96KN3 472 aa9.58□□□□□ -0.88
LIMD1-201ENST00000273317 WASHC2AQ641Q2 1341 aa9.58□□□□□ -0.88
LIMD1-201ENST00000273317 CAVIN1Q6NZI2 390 aaKnown RBP9.58□□□□□ -0.88
LIMD1-201ENST00000273317 TDRD9Q8NDG6 1382 aaKnown RBP9.58□□□□□ -0.88
LIMD1-201ENST00000273317 ODF2Q5BJF6 829 aa9.58□□□□□ -0.88
LIMD1-201ENST00000273317 CCDC9Q9Y3X0 531 aaKnown RBP9.58□□□□□ -0.88
LIMD1-201ENST00000273317 ZNF526Q8TF50 670 aaPredicted RBP9.58□□□□□ -0.88
LIMD1-201ENST00000273317 ZNF396Q96N95 335 aaPredicted RBP9.58□□□□□ -0.88
LIMD1-201ENST00000273317 DHX16O60231 1041 aaKnown RBP9.57□□□□□ -0.88
LIMD1-201ENST00000273317 CNTROBQ8N137 903 aa9.57□□□□□ -0.88
LIMD1-201ENST00000273317 PLIN1O60240 522 aa9.57□□□□□ -0.88
LIMD1-201ENST00000273317 TRHP20396 242 aaPredicted RBP9.57□□□□□ -0.88
LIMD1-201ENST00000273317 SLC4A3P48751 1232 aa9.57□□□□□ -0.88
LIMD1-201ENST00000273317 KINO60870 393 aaKnown RBP9.57□□□□□ -0.88
LIMD1-201ENST00000273317 ZRSR2Q15696 482 aaKnown RBP9.57□□□□□ -0.88
LIMD1-201ENST00000273317 SART3Q15020 963 aaKnown RBP9.57□□□□□ -0.88
LIMD1-201ENST00000273317 TRAK1Q9UPV9 953 aa9.57□□□□□ -0.88
LIMD1-201ENST00000273317 RIPK4P57078 832 aa9.56□□□□□ -0.88
LIMD1-201ENST00000273317 ERLIN2O94905 339 aa9.56□□□□□ -0.88
LIMD1-201ENST00000273317 H0YHG0 523 aa9.56□□□□□ -0.88
LIMD1-201ENST00000273317 IQCEQ6IPM2 695 aa9.56□□□□□ -0.88
LIMD1-201ENST00000273317 LEKR1Q6ZMV7 388 aa9.56□□□□□ -0.88
LIMD1-201ENST00000273317 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.55□□□□□ -0.88
LIMD1-201ENST00000273317 LUC7LQ9NQ29 371 aaKnown RBP9.55□□□□□ -0.88
LIMD1-201ENST00000273317 FANCD2Q9BXW9 1451 aa9.55□□□□□ -0.88
LIMD1-201ENST00000273317 RBM25P49756 843 aaKnown RBP9.55□□□□□ -0.88
LIMD1-201ENST00000273317 BCL2L13Q9BXK5 485 aa9.55□□□□□ -0.88
LIMD1-201ENST00000273317 JMYQ8N9B5 988 aa9.55□□□□□ -0.88
LIMD1-201ENST00000273317 TXLNAP40222 546 aa9.55□□□□□ -0.88
LIMD1-201ENST00000273317 TAF3Q5VWG9 929 aa9.55□□□□□ -0.88
LIMD1-201ENST00000273317 LRRC9Q6ZRR7 1453 aa9.55□□□□□ -0.88
LIMD1-201ENST00000273317 OFD1O75665 1012 aa9.54□□□□□ -0.88
LIMD1-201ENST00000273317 ERC1Q8IUD2 1116 aa9.54□□□□□ -0.88
LIMD1-201ENST00000273317 GOLGA6L10A6NI86 522 aa9.54□□□□□ -0.88
LIMD1-201ENST00000273317 SLC3A2P08195 630 aaKnown RBP9.54□□□□□ -0.88
LIMD1-201ENST00000273317 MAGEC2Q9UBF1 373 aaPredicted RBP9.54□□□□□ -0.88
LIMD1-201ENST00000273317 CASKIN1Q8WXD9 1431 aa9.54□□□□□ -0.88
LIMD1-201ENST00000273317 FKBP5Q13451 457 aaPredicted RBP9.54□□□□□ -0.88
LIMD1-201ENST00000273317 SMG6Q86US8 1419 aaKnown RBP9.54□□□□□ -0.88
LIMD1-201ENST00000273317 CT47B1P0C2W7 299 aaPredicted RBP9.54□□□□□ -0.88
LIMD1-201ENST00000273317 FILIP1LQ4L180 1135 aa9.54□□□□□ -0.88
LIMD1-201ENST00000273317 HSP90AB2PQ58FF8 381 aa9.54□□□□□ -0.88
LIMD1-201ENST00000273317 PLEKHH2Q8IVE3 1493 aa9.54□□□□□ -0.88
LIMD1-201ENST00000273317 APAF1O14727 1248 aa9.54□□□□□ -0.88
LIMD1-201ENST00000273317 TRIM5Q9C035 493 aa9.54□□□□□ -0.88
LIMD1-201ENST00000273317 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.54□□□□□ -0.882e-6■■■■■ 129
LIMD1-201ENST00000273317 ARHGAP5Q13017 1502 aa9.54□□□□□ -0.88
LIMD1-201ENST00000273317 CWC22Q9HCG8 908 aaKnown RBP9.54□□□□□ -0.88
LIMD1-201ENST00000273317 PDIA4P13667 645 aaKnown RBP9.53□□□□□ -0.88
LIMD1-201ENST00000273317 NFKBIBQ15653 356 aa9.53□□□□□ -0.88
LIMD1-201ENST00000273317 GAPVD1Q14C86 1478 aa9.53□□□□□ -0.88
LIMD1-201ENST00000273317 PDILTQ8N807 584 aa9.53□□□□□ -0.88
LIMD1-201ENST00000273317 GOLGA6L7A0A1B0GV03 622 aa9.53□□□□□ -0.88
LIMD1-201ENST00000273317 PRKCSHP14314 528 aaPredicted RBP9.53□□□□□ -0.88
LIMD1-201ENST00000273317 SDF4Q9BRK5 362 aa9.53□□□□□ -0.88
LIMD1-201ENST00000273317 UBTFL1P0CB47 393 aaPredicted RBP9.53□□□□□ -0.88
LIMD1-201ENST00000273317 AEBP1Q8IUX7 1158 aa9.53□□□□□ -0.88
LIMD1-201ENST00000273317 PTPRGP23470 1445 aa9.52□□□□□ -0.88
LIMD1-201ENST00000273317 SMC2O95347 1197 aa9.52□□□□□ -0.89
LIMD1-201ENST00000273317 DACH1Q9UI36 760 aa9.52□□□□□ -0.89
LIMD1-201ENST00000273317 ERLIN1O75477 346 aa9.52□□□□□ -0.89
LIMD1-201ENST00000273317 GNAI3P08754 354 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 575.1 ms