RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 DEPDC5O75140 1603 aa35.18■■■■□ 3.22
CBX4-201ENST00000269397 PMFBP1Q8TBY8 1022 aa35.17■■■■□ 3.22
CBX4-201ENST00000269397 MTHFSP49914 203 aa35.15■■■■□ 3.22
CBX4-201ENST00000269397 SPRYD3Q8NCJ5 442 aa35.14■■■■□ 3.22
CBX4-201ENST00000269397 SHPRHQ149N8 1683 aa35.12■■■■□ 3.21
CBX4-201ENST00000269397 MYOM2P54296 1465 aa35.12■■■■□ 3.21
CBX4-201ENST00000269397 UPF2Q9HAU5 1272 aaKnown RBP35.12■■■■□ 3.21
CBX4-201ENST00000269397 TMEM132EQ6IEE7 984 aa35.11■■■■□ 3.21
CBX4-201ENST00000269397 ATP7AQ04656 1500 aa35.1■■■■□ 3.21
CBX4-201ENST00000269397 TBC1D32Q96NH3 1257 aa35.09■■■■□ 3.21
CBX4-201ENST00000269397 TBC1D2Q9BYX2 928 aa35.09■■■■□ 3.21
CBX4-201ENST00000269397 ANTXR1Q9H6X2 564 aa35.09■■■■□ 3.21
CBX4-201ENST00000269397 NOS1P29475 1434 aa35.09■■■■□ 3.21
CBX4-201ENST00000269397 VWDEQ8N2E2 1590 aa35.08■■■■□ 3.21
CBX4-201ENST00000269397 ARXQ96QS3 562 aa35.08■■■■□ 3.21
CBX4-201ENST00000269397 PHF23Q9BUL5 403 aaPredicted RBP35.08■■■■□ 3.21
CBX4-201ENST00000269397 WDR63Q8IWG1 891 aa35.07■■■■□ 3.2
CBX4-201ENST00000269397 IQSEC2Q5JU85 1478 aa35.05■■■■□ 3.2
CBX4-201ENST00000269397 KIF1BO60333 1816 aa35.05■■■■□ 3.2
CBX4-201ENST00000269397 RWDD1Q9H446 243 aaPredicted RBP35.05■■■■□ 3.2
CBX4-201ENST00000269397 MROH2AA6NES4 1674 aa35.04■■■■□ 3.2
CBX4-201ENST00000269397 EIF5BO60841 1220 aaKnown RBP35.04■■■■□ 3.2
CBX4-201ENST00000269397 FANCAO15360 1455 aa35.02■■■■□ 3.2
CBX4-201ENST00000269397 U2AF1L5P0DN76 240 aaPredicted RBP35.02■■■■□ 3.2
CBX4-201ENST00000269397 U2AF1Q01081 240 aaKnown RBP eCLIP35.02■■■■□ 3.23e-8■■■■□ 20
CBX4-201ENST00000269397 SBNO2Q9Y2G9 1366 aa35.02■■■■□ 3.2
CBX4-201ENST00000269397 TSR2Q969E8 191 aaKnown RBP35.01■■■■□ 3.19
CBX4-201ENST00000269397 MROH1Q8NDA8 1641 aa35■■■■□ 3.19
CBX4-201ENST00000269397 CFAP53Q96M91 514 aa34.99■■■■□ 3.19
CBX4-201ENST00000269397 MVPQ14764 893 aaKnown RBP34.99■■■■□ 3.19
CBX4-201ENST00000269397 INO80Q9ULG1 1556 aaPredicted RBP34.98■■■■□ 3.19
CBX4-201ENST00000269397 FTSJ3Q8IY81 847 aaKnown RBP34.98■■■■□ 3.19
CBX4-201ENST00000269397 FAM43AQ8N2R8 423 aa34.97■■■■□ 3.19
CBX4-201ENST00000269397 UHRF1BP1LA0JNW5 1464 aa34.97■■■■□ 3.19
CBX4-201ENST00000269397 CFAP65Q6ZU64 1925 aaKnown RBP34.97■■■■□ 3.19
CBX4-201ENST00000269397 AAMPQ13685 434 aa34.97■■■■□ 3.19
CBX4-201ENST00000269397 NUTM2DQ5VT03 806 aaPredicted RBP34.97■■■■□ 3.19
CBX4-201ENST00000269397 MYH16Q9H6N6 1097 aa34.97■■■■□ 3.19
CBX4-201ENST00000269397 MYO3AQ8NEV4 1616 aa34.96■■■■□ 3.19
CBX4-201ENST00000269397 IFT172Q9UG01 1749 aa34.96■■■■□ 3.19
CBX4-201ENST00000269397 ZNF518AQ6AHZ1 1483 aa34.95■■■■□ 3.19
CBX4-201ENST00000269397 NEURL4Q96JN8 1562 aa34.95■■■■□ 3.19
CBX4-201ENST00000269397 SENP3Q9H4L4 574 aaPredicted RBP34.94■■■■□ 3.18
CBX4-201ENST00000269397 NRXN1Q9ULB1 1477 aa34.94■■■■□ 3.18
CBX4-201ENST00000269397 MFAP1P55081 439 aaKnown RBP34.94■■■■□ 3.18
CBX4-201ENST00000269397 ZKSCAN2Q63HK3 967 aa34.94■■■■□ 3.18
CBX4-201ENST00000269397 ADGRL1O94910 1474 aa34.93■■■■□ 3.18
CBX4-201ENST00000269397 CCDC27Q2M243 656 aa34.93■■■■□ 3.18
CBX4-201ENST00000269397 DZIP1LQ8IYY4 767 aaKnown RBP34.93■■■■□ 3.18
CBX4-201ENST00000269397 EFCAB6Q5THR3 1501 aa34.92■■■■□ 3.18
CBX4-201ENST00000269397 C14orf93Q9H972 538 aaKnown RBP34.92■■■■□ 3.18
CBX4-201ENST00000269397 GZF1Q9H116 711 aaPredicted RBP34.9■■■■□ 3.18
CBX4-201ENST00000269397 PPRC1Q5VV67 1664 aaKnown RBP34.9■■■■□ 3.18
CBX4-201ENST00000269397 ARAP3Q8WWN8 1544 aa34.9■■■■□ 3.18
CBX4-201ENST00000269397 QRICH2Q9H0J4 1663 aa34.9■■■■□ 3.18
CBX4-201ENST00000269397 SMC4Q9NTJ3 1288 aa34.89■■■■□ 3.18
CBX4-201ENST00000269397 SAFB2Q14151 953 aaKnown RBP eCLIP34.89■■■■□ 3.18
CBX4-201ENST00000269397 EXOSC9Q06265 439 aaKnown RBP34.88■■■■□ 3.17
CBX4-201ENST00000269397 C22orf23Q9BZE7 217 aa34.87■■■■□ 3.17
CBX4-201ENST00000269397 U2SURPO15042 1029 aaKnown RBP34.87■■■■□ 3.17
CBX4-201ENST00000269397 ITPRIPQ8IWB1 547 aa34.86■■■■□ 3.17
CBX4-201ENST00000269397 TRIM27P14373 513 aa34.85■■■■□ 3.17
CBX4-201ENST00000269397 CABP2Q9NPB3 220 aa34.85■■■■□ 3.17
CBX4-201ENST00000269397 GGT6Q6P531 493 aa34.85■■■■□ 3.17
CBX4-201ENST00000269397 ZMYM3Q14202 1370 aa34.83■■■■□ 3.17
CBX4-201ENST00000269397 L1TD1Q5T7N2 865 aaKnown RBP34.83■■■■□ 3.17
CBX4-201ENST00000269397 RRAGDQ9NQL2 400 aaPredicted RBP34.83■■■■□ 3.17
CBX4-201ENST00000269397 ABCA9Q8IUA7 1624 aa34.82■■■■□ 3.17
CBX4-201ENST00000269397 SSH1Q8WYL5 1049 aa34.82■■■■□ 3.17
CBX4-201ENST00000269397 SETBP1Q9Y6X0 1596 aa34.82■■■■□ 3.16
CBX4-201ENST00000269397 ADGRB3O60242 1522 aa34.82■■■■□ 3.16
CBX4-201ENST00000269397 MCM4P33991 863 aa34.81■■■■□ 3.16
CBX4-201ENST00000269397 ZC3H13Q5T200 1668 aaKnown RBP34.8■■■■□ 3.16
CBX4-201ENST00000269397 ADGRB1O14514 1584 aa34.8■■■■□ 3.16
CBX4-201ENST00000269397 XRCC6P12956 609 aaKnown RBP eCLIP34.77■■■■□ 3.165e-8■□□□□ 10.6
CBX4-201ENST00000269397 GGNBP2Q9H3C7 697 aa34.77■■■■□ 3.16
CBX4-201ENST00000269397 NOB1Q9ULX3 412 aaKnown RBP34.77■■■■□ 3.16
CBX4-201ENST00000269397 EVC2Q86UK5 1308 aa34.76■■■■□ 3.16
CBX4-201ENST00000269397 NPATQ14207 1427 aa34.75■■■■□ 3.15
CBX4-201ENST00000269397 TMPOP42166 694 aaKnown RBP34.75■■■■□ 3.15
CBX4-201ENST00000269397 PANK2Q9BZ23 570 aa34.75■■■■□ 3.15
CBX4-201ENST00000269397 TRIM35Q9UPQ4 493 aa34.75■■■■□ 3.15
CBX4-201ENST00000269397 GOLGA6L3A6NEY3 463 aa34.74■■■■□ 3.15
CBX4-201ENST00000269397 CD109Q6YHK3 1445 aa34.74■■■■□ 3.15
CBX4-201ENST00000269397 ANKRD36BQ8N2N9 1353 aa34.73■■■■□ 3.15
CBX4-201ENST00000269397 ATF7IPQ6VMQ6 1270 aa34.73■■■■□ 3.15
CBX4-201ENST00000269397 TMEM57Q8N5G2 664 aa34.73■■■■□ 3.15
CBX4-201ENST00000269397 KIDINS220Q9ULH0 1771 aa34.72■■■■□ 3.15
CBX4-201ENST00000269397 DDX19BQ9UMR2 479 aa34.72■■■■□ 3.15
CBX4-201ENST00000269397 PLEKHF1Q96S99 279 aa34.72■■■■□ 3.15
CBX4-201ENST00000269397 CHMP5Q9NZZ3 219 aa34.72■■■■□ 3.15
CBX4-201ENST00000269397 HDAC1Q13547 482 aaPredicted RBP34.71■■■■□ 3.15
CBX4-201ENST00000269397 RSPH6AQ9H0K4 717 aa34.71■■■■□ 3.15
CBX4-201ENST00000269397 PPLO60437 1756 aa34.71■■■■□ 3.15
CBX4-201ENST00000269397 USP32Q8NFA0 1604 aa34.7■■■■□ 3.15
CBX4-201ENST00000269397 STK26Q9P289 416 aa34.69■■■■□ 3.14
CBX4-201ENST00000269397 TULP4Q9NRJ4 1543 aa34.69■■■■□ 3.14
CBX4-201ENST00000269397 TRAK2O60296 914 aa34.68■■■■□ 3.14
CBX4-201ENST00000269397 ADGRB2O60241 1585 aa34.67■■■■□ 3.14
CBX4-201ENST00000269397 CT47B1P0C2W7 299 aaPredicted RBP34.67■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms