RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 ANTXR1Q9H6X2 564 aa16.79■□□□□ 0.28
NUP54-201ENST00000264883 WDR43Q15061 677 aaKnown RBP eCLIP16.78■□□□□ 0.28
NUP54-201ENST00000264883 ZNF521Q96K83 1311 aa16.78■□□□□ 0.28
NUP54-201ENST00000264883 PDCL3Q9H2J4 239 aa16.78■□□□□ 0.28
NUP54-201ENST00000264883 REREQ9P2R6 1566 aa16.77■□□□□ 0.28
NUP54-201ENST00000264883 CENPJQ9HC77 1338 aaPredicted RBP16.77■□□□□ 0.27
NUP54-201ENST00000264883 TPM2P07951 284 aa16.77■□□□□ 0.27
NUP54-201ENST00000264883 RGL3Q3MIN7 710 aa16.77■□□□□ 0.27
NUP54-201ENST00000264883 NGEFQ8N5V2 710 aa16.77■□□□□ 0.27
NUP54-201ENST00000264883 ABCC3O15438 1527 aa16.76■□□□□ 0.27
NUP54-201ENST00000264883 ESPNB1AK53 854 aa16.76■□□□□ 0.27
NUP54-201ENST00000264883 GOLGA2Q08379 1002 aa16.76■□□□□ 0.27
NUP54-201ENST00000264883 DUSP27Q5VZP5 1158 aa16.76■□□□□ 0.27
NUP54-201ENST00000264883 GZF1Q9H116 711 aaPredicted RBP16.76■□□□□ 0.27
NUP54-201ENST00000264883 KNSTRNQ9Y448 316 aa16.76■□□□□ 0.27
NUP54-201ENST00000264883 CLTCL1P53675 1640 aa16.76■□□□□ 0.27
NUP54-201ENST00000264883 MADDQ8WXG6 1647 aa16.76■□□□□ 0.27
NUP54-201ENST00000264883 ASXL1Q8IXJ9 1541 aa16.76■□□□□ 0.27
NUP54-201ENST00000264883 ADAMTS8Q9UP79 889 aa16.75■□□□□ 0.27
NUP54-201ENST00000264883 MRE11P49959 708 aa16.75■□□□□ 0.27
NUP54-201ENST00000264883 PPP2R1AP30153 589 aa16.74■□□□□ 0.27
NUP54-201ENST00000264883 SLC24A1O60721 1099 aa16.73■□□□□ 0.27
NUP54-201ENST00000264883 NEURL4Q96JN8 1562 aa16.73■□□□□ 0.27
NUP54-201ENST00000264883 SEC24BO95487 1268 aa16.73■□□□□ 0.27
NUP54-201ENST00000264883 CALD1Q05682 793 aaKnown RBP16.73■□□□□ 0.27
NUP54-201ENST00000264883 MYH16Q9H6N6 1097 aa16.73■□□□□ 0.27
NUP54-201ENST00000264883 PLEKHH1Q9ULM0 1364 aa16.73■□□□□ 0.27
NUP54-201ENST00000264883 NINLQ9Y2I6 1382 aa16.73■□□□□ 0.27
NUP54-201ENST00000264883 NPATQ14207 1427 aa16.73■□□□□ 0.27
NUP54-201ENST00000264883 GGT6Q6P531 493 aa16.72■□□□□ 0.27
NUP54-201ENST00000264883 SCAF11Q99590 1463 aaKnown RBP16.72■□□□□ 0.27
NUP54-201ENST00000264883 ZC3H13Q5T200 1668 aaKnown RBP16.72■□□□□ 0.27
NUP54-201ENST00000264883 MCM4P33991 863 aa16.72■□□□□ 0.27
NUP54-201ENST00000264883 AGLP35573 1532 aa16.71■□□□□ 0.27
NUP54-201ENST00000264883 CAMSAP1Q5T5Y3 1602 aa16.71■□□□□ 0.27
NUP54-201ENST00000264883 ERBB4Q15303 1308 aa16.71■□□□□ 0.26
NUP54-201ENST00000264883 KIAA1210Q9ULL0 1709 aa16.71■□□□□ 0.26
NUP54-201ENST00000264883 NKTRP30414 1462 aaKnown RBP16.7■□□□□ 0.26
NUP54-201ENST00000264883 SLFN5Q08AF3 891 aa16.7■□□□□ 0.26
NUP54-201ENST00000264883 AMER1Q5JTC6 1135 aaPredicted RBP16.7■□□□□ 0.26
NUP54-201ENST00000264883 TRMT2AQ8IZ69 625 aaKnown RBP16.7■□□□□ 0.26
NUP54-201ENST00000264883 ARHGEF40Q8TER5 1519 aa16.7■□□□□ 0.26
NUP54-201ENST00000264883 GRPEL1Q9HAV7 217 aa16.69■□□□□ 0.26
NUP54-201ENST00000264883 NLRP1Q9C000 1473 aa16.69■□□□□ 0.26
NUP54-201ENST00000264883 UGGT1Q9NYU2 1555 aa16.68■□□□□ 0.26
NUP54-201ENST00000264883 ARHGAP31Q2M1Z3 1444 aa16.68■□□□□ 0.26
NUP54-201ENST00000264883 SIGLEC1Q9BZZ2 1709 aa16.68■□□□□ 0.26
NUP54-201ENST00000264883 TRAK2O60296 914 aa16.68■□□□□ 0.26
NUP54-201ENST00000264883 TRIM44Q96DX7 344 aaPredicted RBP16.68■□□□□ 0.26
NUP54-201ENST00000264883 MYOM1P52179 1685 aa16.68■□□□□ 0.26
NUP54-201ENST00000264883 PRDM4Q9UKN5 801 aa16.67■□□□□ 0.26
NUP54-201ENST00000264883 TBC1D2Q9BYX2 928 aa16.67■□□□□ 0.26
NUP54-201ENST00000264883 KDM5AP29375 1690 aaKnown RBP16.67■□□□□ 0.26
NUP54-201ENST00000264883 RBM10P98175 930 aaKnown RBP16.66■□□□□ 0.26
NUP54-201ENST00000264883 MAPK8IP3Q9UPT6 1336 aa16.66■□□□□ 0.26
NUP54-201ENST00000264883 NOS1P29475 1434 aa16.66■□□□□ 0.26
NUP54-201ENST00000264883 KIF1BO60333 1816 aa16.65■□□□□ 0.26
NUP54-201ENST00000264883 E9PSI1 815 aa16.65■□□□□ 0.26
NUP54-201ENST00000264883 UPF2Q9HAU5 1272 aaKnown RBP16.65■□□□□ 0.26
NUP54-201ENST00000264883 CGNL1Q0VF96 1302 aa16.64■□□□□ 0.26
NUP54-201ENST00000264883 AAMPQ13685 434 aa16.64■□□□□ 0.25
NUP54-201ENST00000264883 ISY1Q9ULR0 285 aaKnown RBP16.64■□□□□ 0.25
NUP54-201ENST00000264883 IGHDP01880 384 aa16.64■□□□□ 0.25
NUP54-201ENST00000264883 ZMYM3Q14202 1370 aa16.64■□□□□ 0.25
NUP54-201ENST00000264883 CFAP65Q6ZU64 1925 aaKnown RBP16.63■□□□□ 0.25
NUP54-201ENST00000264883 PDE3AQ14432 1141 aa16.63■□□□□ 0.25
NUP54-201ENST00000264883 KIAA1211Q6ZU35 1233 aa16.63■□□□□ 0.25
NUP54-201ENST00000264883 ADGRB3O60242 1522 aa16.62■□□□□ 0.25
NUP54-201ENST00000264883 PIK3C2BO00750 1634 aa16.62■□□□□ 0.25
NUP54-201ENST00000264883 A0A0U1RQG5 324 aaPredicted RBP16.62■□□□□ 0.25
NUP54-201ENST00000264883 SPRYD3Q8NCJ5 442 aa16.62■□□□□ 0.25
NUP54-201ENST00000264883 MROH2AA6NES4 1674 aa16.62■□□□□ 0.25
NUP54-201ENST00000264883 TBC1D32Q96NH3 1257 aa16.62■□□□□ 0.25
NUP54-201ENST00000264883 IFT172Q9UG01 1749 aa16.61■□□□□ 0.25
NUP54-201ENST00000264883 CHMP5Q9NZZ3 219 aa16.6■□□□□ 0.25
NUP54-201ENST00000264883 PPP6R1Q9UPN7 881 aa16.6■□□□□ 0.25
NUP54-201ENST00000264883 MYOM2P54296 1465 aa16.59■□□□□ 0.25
NUP54-201ENST00000264883 DDX11L8A8MPP1 907 aa16.58■□□□□ 0.24
NUP54-201ENST00000264883 PREX1Q8TCU6 1659 aa16.57■□□□□ 0.24
NUP54-201ENST00000264883 NRXN1Q9ULB1 1477 aa16.55■□□□□ 0.24
NUP54-201ENST00000264883 POLR3AO14802 1390 aaPredicted RBP16.55■□□□□ 0.24
NUP54-201ENST00000264883 MAP7D2Q96T17 732 aa16.55■□□□□ 0.24
NUP54-201ENST00000264883 MYO3AQ8NEV4 1616 aa16.55■□□□□ 0.24
NUP54-201ENST00000264883 CLTCQ00610 1675 aaKnown RBP16.55■□□□□ 0.24
NUP54-201ENST00000264883 SBNO2Q9Y2G9 1366 aa16.54■□□□□ 0.24
NUP54-201ENST00000264883 PPLO60437 1756 aa16.54■□□□□ 0.24
NUP54-201ENST00000264883 APAF1O14727 1248 aa16.53■□□□□ 0.24
NUP54-201ENST00000264883 OFD1O75665 1012 aa16.53■□□□□ 0.24
NUP54-201ENST00000264883 BCAR3O75815 825 aa16.53■□□□□ 0.24
NUP54-201ENST00000264883 CLUAP1Q96AJ1 413 aa16.53■□□□□ 0.24
NUP54-201ENST00000264883 TERF1P54274 439 aa16.52■□□□□ 0.24
NUP54-201ENST00000264883 RIPK4P57078 832 aa16.52■□□□□ 0.24
NUP54-201ENST00000264883 ERVK-7P63135 1459 aa16.52■□□□□ 0.24
NUP54-201ENST00000264883 PMFBP1Q8TBY8 1022 aa16.52■□□□□ 0.23
NUP54-201ENST00000264883 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.51■□□□□ 0.23
NUP54-201ENST00000264883 SLC52A1Q9NWF4 448 aa16.51■□□□□ 0.23
NUP54-201ENST00000264883 NCBP3Q53F19 620 aaKnown RBP16.51■□□□□ 0.23
NUP54-201ENST00000264883 GAS2L3Q86XJ1 694 aa16.51■□□□□ 0.23
NUP54-201ENST00000264883 ZSCAN30Q86W11 494 aa16.5■□□□□ 0.23
NUP54-201ENST00000264883 CCDC146Q8IYE0 955 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms