RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 IFT140Q96RY7 1462 aa13.09□□□□□ -0.31
CD44-201ENST00000263398 ZNF608Q9ULD9 1512 aaPredicted RBP13.09□□□□□ -0.31
CD44-201ENST00000263398 ERC2O15083 957 aa13.08□□□□□ -0.32
CD44-201ENST00000263398 MRE11P49959 708 aa13.08□□□□□ -0.32
CD44-201ENST00000263398 BIVM-ERCC5R4GMW8 1640 aa13.08□□□□□ -0.32
CD44-201ENST00000263398 OSCARQ8IYS5 282 aa13.07□□□□□ -0.32
CD44-201ENST00000263398 VPS37CA5D8V6 355 aaPredicted RBP13.07□□□□□ -0.32
CD44-201ENST00000263398 BICD2Q8TD16 824 aa13.07□□□□□ -0.32
CD44-201ENST00000263398 PDZRN3Q9UPQ7 1066 aa13.07□□□□□ -0.32
CD44-201ENST00000263398 AKNAQ7Z591 1439 aa13.07□□□□□ -0.32
CD44-201ENST00000263398 CPLX1O14810 134 aa13.07□□□□□ -0.32
CD44-201ENST00000263398 BACH2Q9BYV9 841 aa13.07□□□□□ -0.32
CD44-201ENST00000263398 SCAPERQ9BY12 1400 aa13.07□□□□□ -0.32
CD44-201ENST00000263398 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.07□□□□□ -0.32
CD44-201ENST00000263398 TNNT3P45378 269 aaPredicted RBP13.06□□□□□ -0.32
CD44-201ENST00000263398 TPD52L1Q16890 204 aaPredicted RBP13.06□□□□□ -0.32
CD44-201ENST00000263398 FAM43AQ8N2R8 423 aa13.06□□□□□ -0.32
CD44-201ENST00000263398 EXOSC9Q06265 439 aaKnown RBP13.06□□□□□ -0.32
CD44-201ENST00000263398 TSR1Q2NL82 804 aaKnown RBP13.06□□□□□ -0.32
CD44-201ENST00000263398 SMG6Q86US8 1419 aaKnown RBP13.06□□□□□ -0.32
CD44-201ENST00000263398 EHBP1L1Q8N3D4 1523 aa13.06□□□□□ -0.32
CD44-201ENST00000263398 LAMC3Q9Y6N6 1575 aa13.05□□□□□ -0.32
CD44-201ENST00000263398 TPM1P09493 284 aa13.05□□□□□ -0.32
CD44-201ENST00000263398 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.05□□□□□ -0.32
CD44-201ENST00000263398 GNAI3P08754 354 aa13.05□□□□□ -0.32
CD44-201ENST00000263398 PSME1Q06323 249 aa13.05□□□□□ -0.32
CD44-201ENST00000263398 TRIM29Q14134 588 aa13.05□□□□□ -0.32
CD44-201ENST00000263398 UBTFL1P0CB47 393 aaPredicted RBP13.05□□□□□ -0.32
CD44-201ENST00000263398 SYNJ2O15056 1496 aa13.04□□□□□ -0.32
CD44-201ENST00000263398 MARCH6O60337 910 aa13.04□□□□□ -0.32
CD44-201ENST00000263398 AMER1Q5JTC6 1135 aaPredicted RBP13.04□□□□□ -0.32
CD44-201ENST00000263398 C9orf84Q5VXU9 1444 aa13.04□□□□□ -0.32
CD44-201ENST00000263398 PES1O00541 588 aaKnown RBP13.04□□□□□ -0.32
CD44-201ENST00000263398 TRAK2O60296 914 aa13.04□□□□□ -0.32
CD44-201ENST00000263398 PRKAR2BP31323 418 aa13.04□□□□□ -0.32
CD44-201ENST00000263398 TRDNQ13061 729 aa13.04□□□□□ -0.32
CD44-201ENST00000263398 ARHGAP5Q13017 1502 aa13.03□□□□□ -0.32
CD44-201ENST00000263398 CT47B1P0C2W7 299 aaPredicted RBP13.03□□□□□ -0.32
CD44-201ENST00000263398 CCDC184Q52MB2 194 aa13.03□□□□□ -0.32
CD44-201ENST00000263398 GCC1Q96CN9 775 aa13.03□□□□□ -0.32
CD44-201ENST00000263398 BCAR3O75815 825 aa13.03□□□□□ -0.32
CD44-201ENST00000263398 TROQ12816 1431 aaPredicted RBP13.03□□□□□ -0.32
CD44-201ENST00000263398 SLC12A5Q9H2X9 1139 aa13.03□□□□□ -0.32
CD44-201ENST00000263398 NINLQ9Y2I6 1382 aa13.02□□□□□ -0.32
CD44-201ENST00000263398 WDR63Q8IWG1 891 aa13.02□□□□□ -0.33
CD44-201ENST00000263398 G3V3G9 751 aa13.02□□□□□ -0.33
CD44-201ENST00000263398 NASPP49321 788 aaPredicted RBP13.02□□□□□ -0.33
CD44-201ENST00000263398 DCAF8Q5TAQ9 597 aa13.02□□□□□ -0.33
CD44-201ENST00000263398 SASS6Q6UVJ0 657 aa13.02□□□□□ -0.33
CD44-201ENST00000263398 APPP05067 770 aa13.01□□□□□ -0.33
CD44-201ENST00000263398 MCM2P49736 904 aa13.01□□□□□ -0.33
CD44-201ENST00000263398 EVA1CP58658 441 aa13.01□□□□□ -0.33
CD44-201ENST00000263398 RABEP1Q15276 862 aa13.01□□□□□ -0.33
CD44-201ENST00000263398 TWISTNBQ3B726 338 aaPredicted RBP13.01□□□□□ -0.33
CD44-201ENST00000263398 CCDC73Q6ZRK6 1079 aa13.01□□□□□ -0.33
CD44-201ENST00000263398 CLASRPQ8N2M8 674 aaKnown RBP13.01□□□□□ -0.33
CD44-201ENST00000263398 PLB1Q6P1J6 1458 aa13.01□□□□□ -0.33
CD44-201ENST00000263398 EPRSP07814 1512 aaKnown RBP13.01□□□□□ -0.33
CD44-201ENST00000263398 MBD3O95983 291 aa13.01□□□□□ -0.33
CD44-201ENST00000263398 CCAR2Q8N163 923 aaKnown RBP13.01□□□□□ -0.33
CD44-201ENST00000263398 RAPGEF4Q8WZA2 1011 aa13.01□□□□□ -0.33
CD44-201ENST00000263398 ZNF592Q92610 1267 aa13.01□□□□□ -0.33
CD44-201ENST00000263398 WDR97A6NE52 1622 aa13.01□□□□□ -0.33
CD44-201ENST00000263398 NLRP6P59044 892 aa13□□□□□ -0.33
CD44-201ENST00000263398 GAS2L2Q8NHY3 880 aa13□□□□□ -0.33
CD44-201ENST00000263398 ZSCAN21Q9Y5A6 473 aaPredicted RBP13□□□□□ -0.33
CD44-201ENST00000263398 FAM13BQ9NYF5 915 aa13□□□□□ -0.33
CD44-201ENST00000263398 CCDC30Q5VVM6 783 aa13□□□□□ -0.33
CD44-201ENST00000263398 VSIG10Q8N0Z9 540 aa13□□□□□ -0.33
CD44-201ENST00000263398 HOOK1Q9UJC3 728 aaKnown RBP13□□□□□ -0.33
CD44-201ENST00000263398 A0A0U1RQG5 324 aaPredicted RBP13□□□□□ -0.33
CD44-201ENST00000263398 NEK4P51957 841 aa13□□□□□ -0.33
CD44-201ENST00000263398 NAIPQ13075 1403 aa12.99□□□□□ -0.33
CD44-201ENST00000263398 SURF6O75683 361 aaKnown RBP12.99□□□□□ -0.33
CD44-201ENST00000263398 GPS2Q13227 327 aa12.99□□□□□ -0.33
CD44-201ENST00000263398 RIC3Q7Z5B4 369 aa12.99□□□□□ -0.33
CD44-201ENST00000263398 CNTROBQ8N137 903 aa12.99□□□□□ -0.33
CD44-201ENST00000263398 TSR2Q969E8 191 aaKnown RBP12.99□□□□□ -0.33
CD44-201ENST00000263398 IPO7O95373 1038 aaKnown RBP12.99□□□□□ -0.33
CD44-201ENST00000263398 TPM2P07951 284 aa12.99□□□□□ -0.33
CD44-201ENST00000263398 ANKRD20A12PQ8NF67 263 aa12.99□□□□□ -0.33
CD44-201ENST00000263398 CEP89Q96ST8 783 aa12.99□□□□□ -0.33
CD44-201ENST00000263398 PLEKHH2Q8IVE3 1493 aa12.98□□□□□ -0.33
CD44-201ENST00000263398 ATF7IPQ6VMQ6 1270 aa12.98□□□□□ -0.33
CD44-201ENST00000263398 PSMA5P28066 241 aa12.98□□□□□ -0.33
CD44-201ENST00000263398 FAM69CQ0P6D2 419 aa12.98□□□□□ -0.33
CD44-201ENST00000263398 NOB1Q9ULX3 412 aaKnown RBP12.98□□□□□ -0.33
CD44-201ENST00000263398 ERBINQ96RT1 1412 aa12.98□□□□□ -0.33
CD44-201ENST00000263398 DAPK1P53355 1430 aa12.98□□□□□ -0.33
CD44-201ENST00000263398 IQGAP2Q13576 1575 aa12.97□□□□□ -0.33
CD44-201ENST00000263398 KIAA0586Q9BVV6 1533 aa12.97□□□□□ -0.33
CD44-201ENST00000263398 RALYLQ86SE5 291 aaKnown RBP12.97□□□□□ -0.33
CD44-201ENST00000263398 HOMER1Q86YM7 354 aa12.97□□□□□ -0.33
CD44-201ENST00000263398 PRAM1Q96QH2 718 aa12.97□□□□□ -0.33
CD44-201ENST00000263398 MVPQ14764 893 aaKnown RBP12.97□□□□□ -0.33
CD44-201ENST00000263398 CAVIN1Q6NZI2 390 aaKnown RBP12.96□□□□□ -0.33
CD44-201ENST00000263398 CCDC47Q96A33 483 aaKnown RBP12.96□□□□□ -0.33
CD44-201ENST00000263398 NEUROD6Q96NK8 337 aa12.96□□□□□ -0.33
CD44-201ENST00000263398 CCDC39Q9UFE4 941 aa12.96□□□□□ -0.33
CD44-201ENST00000263398 PDCP20941 246 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms