RNA–Protein interactions for RNA: ENST00000262396.10

TRAF4-202, Transcript of TNF receptor associated factor 4, humanhuman

TSL 1 (best) BASIC

Gene TRAF4, Length 683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-202ENST00000262396 NPHP3Q7Z494 1330 aa18.03■□□□□ 0.48
TRAF4-202ENST00000262396 NHSL1Q5SYE7 1610 aa18.03■□□□□ 0.48
TRAF4-202ENST00000262396 LRPPRCP42704 1394 aaKnown RBP18.02■□□□□ 0.47
TRAF4-202ENST00000262396 SOS2Q07890 1332 aaPredicted RBP18■□□□□ 0.47
TRAF4-202ENST00000262396 FOXO3O43524 673 aa18■□□□□ 0.47
TRAF4-202ENST00000262396 RBM6P78332 1123 aaKnown RBP18■□□□□ 0.47
TRAF4-202ENST00000262396 XPCQ01831 940 aaPredicted RBP18■□□□□ 0.47
TRAF4-202ENST00000262396 SETD1AO15047 1707 aaKnown RBP18■□□□□ 0.47
TRAF4-202ENST00000262396 HAP1P54257 671 aaPredicted RBP17.99■□□□□ 0.47
TRAF4-202ENST00000262396 USP21Q9UK80 565 aa17.99■□□□□ 0.47
TRAF4-202ENST00000262396 SPATA31E1Q6ZUB1 1445 aa17.98■□□□□ 0.47
TRAF4-202ENST00000262396 POGKQ9P215 609 aa17.98■□□□□ 0.47
TRAF4-202ENST00000262396 DHX57Q6P158 1386 aaKnown RBP17.98■□□□□ 0.47
TRAF4-202ENST00000262396 PRAG1Q86YV5 1406 aa17.98■□□□□ 0.47
TRAF4-202ENST00000262396 ABCC11Q96J66 1382 aa17.97■□□□□ 0.47
TRAF4-202ENST00000262396 SAFB2Q14151 953 aaKnown RBP eCLIP17.97■□□□□ 0.47
TRAF4-202ENST00000262396 UPF1Q92900 1129 aaKnown RBP eCLIP17.96■□□□□ 0.47
TRAF4-202ENST00000262396 TRPC5Q9UL62 973 aaPredicted RBP17.96■□□□□ 0.47
TRAF4-202ENST00000262396 RAB3GAP2Q9H2M9 1393 aa17.95■□□□□ 0.46
TRAF4-202ENST00000262396 CFAP70Q5T0N1 1121 aa17.95■□□□□ 0.46
TRAF4-202ENST00000262396 YTHDC2Q9H6S0 1430 aaKnown RBP17.95■□□□□ 0.46
TRAF4-202ENST00000262396 CDC42BPGQ6DT37 1551 aa17.95■□□□□ 0.46
TRAF4-202ENST00000262396 PLEKHG5O94827 1062 aa17.94■□□□□ 0.46
TRAF4-202ENST00000262396 C14orf93Q9H972 538 aaKnown RBP17.94■□□□□ 0.46
TRAF4-202ENST00000262396 KDM2AQ9Y2K7 1162 aa17.94■□□□□ 0.46
TRAF4-202ENST00000262396 PIK3C2GO75747 1445 aa17.94■□□□□ 0.46
TRAF4-202ENST00000262396 LMOD2Q6P5Q4 547 aa17.93■□□□□ 0.46
TRAF4-202ENST00000262396 PLEKHH1Q9ULM0 1364 aa17.92■□□□□ 0.46
TRAF4-202ENST00000262396 TECPR2O15040 1411 aa17.92■□□□□ 0.46
TRAF4-202ENST00000262396 PSME1Q06323 249 aa17.92■□□□□ 0.46
TRAF4-202ENST00000262396 PRAM1Q96QH2 718 aa17.92■□□□□ 0.46
TRAF4-202ENST00000262396 CDK12Q9NYV4 1490 aaPredicted RBP17.92■□□□□ 0.46
TRAF4-202ENST00000262396 KRT28Q7Z3Y7 464 aa17.91■□□□□ 0.46
TRAF4-202ENST00000262396 DCAF11Q8TEB1 546 aa17.9■□□□□ 0.46
TRAF4-202ENST00000262396 SIRT1Q96EB6 747 aa17.9■□□□□ 0.46
TRAF4-202ENST00000262396 PHF8Q9UPP1 1060 aa17.89■□□□□ 0.45
TRAF4-202ENST00000262396 TRAK1Q9UPV9 953 aa17.88■□□□□ 0.45
TRAF4-202ENST00000262396 IFT172Q9UG01 1749 aa17.87■□□□□ 0.45
TRAF4-202ENST00000262396 FNBP4Q8N3X1 1017 aaPredicted RBP17.87■□□□□ 0.45
TRAF4-202ENST00000262396 RGS12O14924 1447 aa17.87■□□□□ 0.45
TRAF4-202ENST00000262396 MYOM2P54296 1465 aa17.87■□□□□ 0.45
TRAF4-202ENST00000262396 LAMC1P11047 1609 aa17.87■□□□□ 0.45
TRAF4-202ENST00000262396 SPATA31A3Q5VYP0 1347 aa17.85■□□□□ 0.45
TRAF4-202ENST00000262396 ATAD2Q6PL18 1390 aa17.85■□□□□ 0.45
TRAF4-202ENST00000262396 KNDC1Q76NI1 1749 aa17.85■□□□□ 0.45
TRAF4-202ENST00000262396 PXDNQ92626 1479 aa17.85■□□□□ 0.45
TRAF4-202ENST00000262396 PMFBP1Q8TBY8 1022 aa17.84■□□□□ 0.45
TRAF4-202ENST00000262396 HIRIP3Q9BW71 556 aaPredicted RBP17.84■□□□□ 0.45
TRAF4-202ENST00000262396 CCDC9Q9Y3X0 531 aaKnown RBP17.84■□□□□ 0.45
TRAF4-202ENST00000262396 MINK1Q8N4C8 1332 aaPredicted RBP17.83■□□□□ 0.44
TRAF4-202ENST00000262396 STAC3Q96MF2 364 aa17.82■□□□□ 0.44
TRAF4-202ENST00000262396 KIF1AQ12756 1690 aa17.81■□□□□ 0.44
TRAF4-202ENST00000262396 GJD4Q96KN9 370 aaPredicted RBP17.81■□□□□ 0.44
TRAF4-202ENST00000262396 EIF3AQ14152 1382 aaKnown RBP17.8■□□□□ 0.44
TRAF4-202ENST00000262396 GPRASP1Q5JY77 1395 aa17.8■□□□□ 0.44
TRAF4-202ENST00000262396 COL22A1Q8NFW1 1626 aaPredicted RBP17.8■□□□□ 0.44
TRAF4-202ENST00000262396 UNC5CLQ8IV45 518 aa17.8■□□□□ 0.44
TRAF4-202ENST00000262396 FMN2Q9NZ56 1722 aa17.8■□□□□ 0.44
TRAF4-202ENST00000262396 NRXN1Q9ULB1 1477 aa17.8■□□□□ 0.44
TRAF4-202ENST00000262396 ATRNO75882 1429 aa17.8■□□□□ 0.44
TRAF4-202ENST00000262396 A0A0G2JS52 829 aa17.79■□□□□ 0.44
TRAF4-202ENST00000262396 HRCP23327 699 aa17.79■□□□□ 0.44
TRAF4-202ENST00000262396 MYT1Q01538 1121 aa17.79■□□□□ 0.44
TRAF4-202ENST00000262396 NGDNQ8NEJ9 315 aaKnown RBP17.79■□□□□ 0.44
TRAF4-202ENST00000262396 CABLES1Q8TDN4 633 aa17.79■□□□□ 0.44
TRAF4-202ENST00000262396 TNS3Q68CZ2 1445 aa17.79■□□□□ 0.44
TRAF4-202ENST00000262396 ARHGEF10O15013 1369 aa17.79■□□□□ 0.44
TRAF4-202ENST00000262396 PAK3O75914 559 aaPredicted RBP17.78■□□□□ 0.44
TRAF4-202ENST00000262396 ANKARQ7Z5J8 1434 aa17.76■□□□□ 0.43
TRAF4-202ENST00000262396 SBNO1A3KN83 1393 aa17.76■□□□□ 0.43
TRAF4-202ENST00000262396 WASLO00401 505 aaPredicted RBP17.75■□□□□ 0.43
TRAF4-202ENST00000262396 DLC1Q96QB1 1528 aa17.75■□□□□ 0.43
TRAF4-202ENST00000262396 BCL9LQ86UU0 1499 aa17.75■□□□□ 0.43
TRAF4-202ENST00000262396 SF3B2Q13435 895 aaKnown RBP17.74■□□□□ 0.43
TRAF4-202ENST00000262396 CCDC125Q86Z20 511 aa17.72■□□□□ 0.43
TRAF4-202ENST00000262396 ZRANB1Q9UGI0 708 aa17.71■□□□□ 0.43
TRAF4-202ENST00000262396 MARF1Q9Y4F3 1742 aaKnown RBP17.69■□□□□ 0.42
TRAF4-202ENST00000262396 RALGAPBQ86X10 1494 aa17.69■□□□□ 0.42
TRAF4-202ENST00000262396 RGPD8O14715 1765 aaPredicted RBP17.69■□□□□ 0.42
TRAF4-202ENST00000262396 VPS72Q15906 364 aa17.69■□□□□ 0.42
TRAF4-202ENST00000262396 SEPT12Q8IYM1 358 aa17.69■□□□□ 0.42
TRAF4-202ENST00000262396 ADGRB1O14514 1584 aa17.69■□□□□ 0.42
TRAF4-202ENST00000262396 USP32Q8NFA0 1604 aa17.69■□□□□ 0.42
TRAF4-202ENST00000262396 SLIT2O94813 1529 aa17.68■□□□□ 0.42
TRAF4-202ENST00000262396 NUDT16Q96DE0 195 aaKnown RBP17.68■□□□□ 0.42
TRAF4-202ENST00000262396 FAM83GA6ND36 823 aa17.67■□□□□ 0.42
TRAF4-202ENST00000262396 BTG4Q9NY30 223 aa17.67■□□□□ 0.42
TRAF4-202ENST00000262396 TULP4Q9NRJ4 1543 aa17.67■□□□□ 0.42
TRAF4-202ENST00000262396 CDK19Q9BWU1 502 aa17.66■□□□□ 0.42
TRAF4-202ENST00000262396 PRR36Q9H6K5 1346 aa17.66■□□□□ 0.42
TRAF4-202ENST00000262396 ADGRB2O60241 1585 aa17.66■□□□□ 0.42
TRAF4-202ENST00000262396 PRDM11Q9NQV5 511 aa17.65■□□□□ 0.42
TRAF4-202ENST00000262396 SRPK2P78362 688 aaKnown RBP17.64■□□□□ 0.41
TRAF4-202ENST00000262396 KRT27Q7Z3Y8 459 aa17.64■□□□□ 0.41
TRAF4-202ENST00000262396 FAM98CQ17RN3 349 aaKnown RBP17.63■□□□□ 0.41
TRAF4-202ENST00000262396 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.62■□□□□ 0.41
TRAF4-202ENST00000262396 NUTM2GQ5VZR2 741 aa17.62■□□□□ 0.41
TRAF4-202ENST00000262396 CCDC61Q9Y6R9 512 aa17.61■□□□□ 0.41
TRAF4-202ENST00000262396 EVA1CP58658 441 aa17.6■□□□□ 0.41
TRAF4-202ENST00000262396 STRN4Q9NRL3 753 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms