RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 CABLES1Q8TDN4 633 aa9.15□□□□□ -0.94
CCDC54-201ENST00000261058 CSPP1Q1MSJ5 1256 aa9.14□□□□□ -0.95
CCDC54-201ENST00000261058 WBP1LQ9NX94 342 aa9.14□□□□□ -0.95
CCDC54-201ENST00000261058 PLA2G2EQ9NZK7 142 aa9.14□□□□□ -0.95
CCDC54-201ENST00000261058 SPDYE5A6NIY4 337 aa9.14□□□□□ -0.95
CCDC54-201ENST00000261058 MTMR2Q13614 643 aa9.14□□□□□ -0.95
CCDC54-201ENST00000261058 PUS10Q3MIT2 529 aaKnown RBP9.13□□□□□ -0.95
CCDC54-201ENST00000261058 SLC27A5Q9Y2P5 690 aa9.13□□□□□ -0.95
CCDC54-201ENST00000261058 SALL2Q9Y467 1007 aaPredicted RBP9.13□□□□□ -0.95
CCDC54-201ENST00000261058 NYAP1Q6ZVC0 841 aa9.12□□□□□ -0.95
CCDC54-201ENST00000261058 KCTD12Q96CX2 325 aaKnown RBP9.12□□□□□ -0.95
CCDC54-201ENST00000261058 ATP1B4Q9UN42 357 aaPredicted RBP9.12□□□□□ -0.95
CCDC54-201ENST00000261058 ZMYND15Q9H091 742 aa9.11□□□□□ -0.95
CCDC54-201ENST00000261058 NUTM2BA6NNL0 878 aaPredicted RBP9.1□□□□□ -0.95
CCDC54-201ENST00000261058 NUTM2EB1AL46 878 aaPredicted RBP9.1□□□□□ -0.95
CCDC54-201ENST00000261058 NUTM2DQ5VT03 806 aaPredicted RBP9.1□□□□□ -0.95
CCDC54-201ENST00000261058 NUTM2AQ8IVF1 878 aaPredicted RBP9.1□□□□□ -0.95
CCDC54-201ENST00000261058 THAP11Q96EK4 314 aa9.1□□□□□ -0.95
CCDC54-201ENST00000261058 CFAP99D6REC4 459 aa9.09□□□□□ -0.95
CCDC54-201ENST00000261058 Q3C1V9 767 aa9.09□□□□□ -0.95
CCDC54-201ENST00000261058 RETREG3Q86VR2 466 aa9.09□□□□□ -0.95
CCDC54-201ENST00000261058 SNRKQ9NRH2 765 aa9.09□□□□□ -0.95
CCDC54-201ENST00000261058 PCDHB3Q9Y5E6 796 aa9.09□□□□□ -0.95
CCDC54-201ENST00000261058 SCUBE3Q8IX30 993 aa9.08□□□□□ -0.96
CCDC54-201ENST00000261058 MTMR14Q8NCE2 650 aa9.08□□□□□ -0.96
CCDC54-201ENST00000261058 SYMPKQ92797 1274 aaKnown RBP9.08□□□□□ -0.96
CCDC54-201ENST00000261058 A6NJR5 290 aa9.07□□□□□ -0.96
CCDC54-201ENST00000261058 C6orf229H3BNL8 230 aa9.07□□□□□ -0.96
CCDC54-201ENST00000261058 DESI1Q6ICB0 168 aa9.07□□□□□ -0.96
CCDC54-201ENST00000261058 BRICD5Q6PL45 260 aa9.07□□□□□ -0.96
CCDC54-201ENST00000261058 BLOC1S3Q6QNY0 202 aa9.07□□□□□ -0.96
CCDC54-201ENST00000261058 NR1I2O75469 434 aa9.06□□□□□ -0.96
CCDC54-201ENST00000261058 USP17L8P0C7I0 530 aa9.06□□□□□ -0.96
CCDC54-201ENST00000261058 RNF19BQ6ZMZ0 732 aa9.06□□□□□ -0.96
CCDC54-201ENST00000261058 AP1G2O75843 785 aa9.05□□□□□ -0.96
CCDC54-201ENST00000261058 CTDSPL2Q05D32 466 aa9.05□□□□□ -0.96
CCDC54-201ENST00000261058 PRR7Q8TB68 274 aa9.05□□□□□ -0.96
CCDC54-201ENST00000261058 UBTFP17480 764 aaKnown RBP9.04□□□□□ -0.96
CCDC54-201ENST00000261058 HELBQ8NG08 1087 aaPredicted RBP9.04□□□□□ -0.96
CCDC54-201ENST00000261058 GJD4Q96KN9 370 aaPredicted RBP9.04□□□□□ -0.96
CCDC54-201ENST00000261058 USB1Q9BQ65 265 aaKnown RBP9.04□□□□□ -0.96
CCDC54-201ENST00000261058 FMNL1O95466 1100 aaPredicted RBP9.03□□□□□ -0.96
CCDC54-201ENST00000261058 FNBP4Q8N3X1 1017 aaPredicted RBP9.02□□□□□ -0.97
CCDC54-201ENST00000261058 CLUAP1Q96AJ1 413 aa9.02□□□□□ -0.97
CCDC54-201ENST00000261058 POM121Q96HA1 1249 aa9.02□□□□□ -0.97
CCDC54-201ENST00000261058 COG6Q9Y2V7 657 aa9.02□□□□□ -0.97
CCDC54-201ENST00000261058 MSS51Q4VC12 460 aa9.01□□□□□ -0.97
CCDC54-201ENST00000261058 TJAP1Q5JTD0 557 aa9.01□□□□□ -0.97
CCDC54-201ENST00000261058 TRIM34Q9BYJ4 488 aa9.01□□□□□ -0.97
CCDC54-201ENST00000261058 HMX1Q9NP08 348 aaPredicted RBP9.01□□□□□ -0.97
CCDC54-201ENST00000261058 PTPN5P54829 565 aa9□□□□□ -0.97
CCDC54-201ENST00000261058 MTRQ99707 1265 aa9□□□□□ -0.97
CCDC54-201ENST00000261058 APBB1O00213 710 aa8.99□□□□□ -0.97
CCDC54-201ENST00000261058 PER1O15534 1290 aaPredicted RBP8.99□□□□□ -0.97
CCDC54-201ENST00000261058 GPR37L1O60883 481 aa8.99□□□□□ -0.97
CCDC54-201ENST00000261058 ZPR1O75312 459 aa8.99□□□□□ -0.97
CCDC54-201ENST00000261058 COPS2P61201 443 aa8.99□□□□□ -0.97
CCDC54-201ENST00000261058 LYPD8Q6UX82 237 aa8.99□□□□□ -0.97
CCDC54-201ENST00000261058 FAM160A2Q8N612 972 aaPredicted RBP8.99□□□□□ -0.97
CCDC54-201ENST00000261058 LRRN4Q8WUT4 740 aa8.99□□□□□ -0.97
CCDC54-201ENST00000261058 MMP16P51512 607 aa8.97□□□□□ -0.97
CCDC54-201ENST00000261058 SPSB2Q99619 263 aa8.97□□□□□ -0.97
CCDC54-201ENST00000261058 TRAK2O60296 914 aa8.97□□□□□ -0.97
CCDC54-201ENST00000261058 DXOO77932 396 aaKnown RBP8.97□□□□□ -0.97
CCDC54-201ENST00000261058 JUNDP17535 347 aa8.97□□□□□ -0.97
CCDC54-201ENST00000261058 PROSER2Q86WR7 435 aaPredicted RBP8.97□□□□□ -0.97
CCDC54-201ENST00000261058 IL21Q9HBE4 155 aa8.97□□□□□ -0.97
CCDC54-201ENST00000261058 RAD21O60216 631 aa8.96□□□□□ -0.98
CCDC54-201ENST00000261058 ADH1BP00325 375 aa8.96□□□□□ -0.98
CCDC54-201ENST00000261058 PTPRNQ16849 979 aa8.96□□□□□ -0.98
CCDC54-201ENST00000261058 IFFO2Q5TF58 517 aa8.96□□□□□ -0.98
CCDC54-201ENST00000261058 TSC1Q92574 1164 aa8.96□□□□□ -0.98
CCDC54-201ENST00000261058 GDPD2Q9HCC8 539 aa8.96□□□□□ -0.98
CCDC54-201ENST00000261058 TLL1O43897 1013 aa8.95□□□□□ -0.98
CCDC54-201ENST00000261058 F12P00748 615 aaPredicted RBP8.95□□□□□ -0.98
CCDC54-201ENST00000261058 ZNF516Q92618 1163 aa8.95□□□□□ -0.98
CCDC54-201ENST00000261058 TBC1D2BQ9UPU7 963 aa8.95□□□□□ -0.98
CCDC54-201ENST00000261058 NDUFB9Q9Y6M9 179 aa8.95□□□□□ -0.98
CCDC54-201ENST00000261058 EPS8L1Q8TE68 723 aa8.94□□□□□ -0.98
CCDC54-201ENST00000261058 SUPT5HO00267 1087 aaKnown RBP8.93□□□□□ -0.98
CCDC54-201ENST00000261058 RGS20O76081 388 aa8.93□□□□□ -0.98
CCDC54-201ENST00000261058 ITGBL1O95965 494 aaPredicted RBP8.93□□□□□ -0.98
CCDC54-201ENST00000261058 PRDM9Q9NQV7 894 aa8.93□□□□□ -0.98
CCDC54-201ENST00000261058 IRF5Q13568 498 aa8.92□□□□□ -0.98
CCDC54-201ENST00000261058 C1orf115Q9H7X2 142 aa8.92□□□□□ -0.98
CCDC54-201ENST00000261058 PRM3Q9NNZ6 103 aa8.92□□□□□ -0.98
CCDC54-201ENST00000261058 NR6A1Q15406 480 aa8.9□□□□□ -0.98
CCDC54-201ENST00000261058 CCNYL3P0C7X3 344 aa8.89□□□□□ -0.99
CCDC54-201ENST00000261058 EVA1BQ9NVM1 165 aa8.89□□□□□ -0.99
CCDC54-201ENST00000261058 NKX2-3Q8TAU0 364 aa8.88□□□□□ -0.99
CCDC54-201ENST00000261058 ABL2P42684 1182 aa8.88□□□□□ -0.99
CCDC54-201ENST00000261058 NUDT12Q9BQG2 462 aa8.88□□□□□ -0.99
CCDC54-201ENST00000261058 SLC6A16Q9GZN6 736 aa8.88□□□□□ -0.99
CCDC54-201ENST00000261058 MAP10Q9P2G4 905 aa8.88□□□□□ -0.99
CCDC54-201ENST00000261058 A0A0G2JS52 829 aa8.86□□□□□ -0.99
CCDC54-201ENST00000261058 KCNH2Q12809 1159 aa8.86□□□□□ -0.99
CCDC54-201ENST00000261058 ZC3H4Q9UPT8 1303 aaKnown RBP8.85□□□□□ -0.99
CCDC54-201ENST00000261058 ARID3CA6NKF2 412 aa8.85□□□□□ -0.99
CCDC54-201ENST00000261058 KCNC4Q03721 635 aa8.85□□□□□ -0.99
CCDC54-201ENST00000261058 FKBPLQ9UIM3 349 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms