RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 CABLES1Q8TDN4 633 aa9.15□□□□□ -0.94
CCDC54-201ENST00000261058 CSPP1Q1MSJ5 1256 aa9.14□□□□□ -0.95
CCDC54-201ENST00000261058 WBP1LQ9NX94 342 aa9.14□□□□□ -0.95
CCDC54-201ENST00000261058 PLA2G2EQ9NZK7 142 aa9.14□□□□□ -0.95
CCDC54-201ENST00000261058 SPDYE5A6NIY4 337 aa9.14□□□□□ -0.95
CCDC54-201ENST00000261058 MTMR2Q13614 643 aa9.14□□□□□ -0.95
CCDC54-201ENST00000261058 PUS10Q3MIT2 529 aaKnown RBP9.13□□□□□ -0.95
CCDC54-201ENST00000261058 SLC27A5Q9Y2P5 690 aa9.13□□□□□ -0.95
CCDC54-201ENST00000261058 SALL2Q9Y467 1007 aaPredicted RBP9.13□□□□□ -0.95
CCDC54-201ENST00000261058 NYAP1Q6ZVC0 841 aa9.12□□□□□ -0.95
CCDC54-201ENST00000261058 KCTD12Q96CX2 325 aaKnown RBP9.12□□□□□ -0.95
CCDC54-201ENST00000261058 ATP1B4Q9UN42 357 aaPredicted RBP9.12□□□□□ -0.95
CCDC54-201ENST00000261058 ZMYND15Q9H091 742 aa9.11□□□□□ -0.95
CCDC54-201ENST00000261058 NUTM2BA6NNL0 878 aaPredicted RBP9.1□□□□□ -0.95
CCDC54-201ENST00000261058 NUTM2EB1AL46 878 aaPredicted RBP9.1□□□□□ -0.95
CCDC54-201ENST00000261058 NUTM2DQ5VT03 806 aaPredicted RBP9.1□□□□□ -0.95
CCDC54-201ENST00000261058 NUTM2AQ8IVF1 878 aaPredicted RBP9.1□□□□□ -0.95
CCDC54-201ENST00000261058 THAP11Q96EK4 314 aa9.1□□□□□ -0.95
CCDC54-201ENST00000261058 CFAP99D6REC4 459 aa9.09□□□□□ -0.95
CCDC54-201ENST00000261058 Q3C1V9 767 aa9.09□□□□□ -0.95
CCDC54-201ENST00000261058 RETREG3Q86VR2 466 aa9.09□□□□□ -0.95
CCDC54-201ENST00000261058 SNRKQ9NRH2 765 aa9.09□□□□□ -0.95
CCDC54-201ENST00000261058 PCDHB3Q9Y5E6 796 aa9.09□□□□□ -0.95
CCDC54-201ENST00000261058 SCUBE3Q8IX30 993 aa9.08□□□□□ -0.96
CCDC54-201ENST00000261058 MTMR14Q8NCE2 650 aa9.08□□□□□ -0.96
CCDC54-201ENST00000261058 SYMPKQ92797 1274 aaKnown RBP9.08□□□□□ -0.96
CCDC54-201ENST00000261058 A6NJR5 290 aa9.07□□□□□ -0.96
CCDC54-201ENST00000261058 C6orf229H3BNL8 230 aa9.07□□□□□ -0.96
CCDC54-201ENST00000261058 DESI1Q6ICB0 168 aa9.07□□□□□ -0.96
CCDC54-201ENST00000261058 BRICD5Q6PL45 260 aa9.07□□□□□ -0.96
CCDC54-201ENST00000261058 BLOC1S3Q6QNY0 202 aa9.07□□□□□ -0.96
CCDC54-201ENST00000261058 NR1I2O75469 434 aa9.06□□□□□ -0.96
CCDC54-201ENST00000261058 USP17L8P0C7I0 530 aa9.06□□□□□ -0.96
CCDC54-201ENST00000261058 RNF19BQ6ZMZ0 732 aa9.06□□□□□ -0.96
CCDC54-201ENST00000261058 AP1G2O75843 785 aa9.05□□□□□ -0.96
CCDC54-201ENST00000261058 CTDSPL2Q05D32 466 aa9.05□□□□□ -0.96
CCDC54-201ENST00000261058 PRR7Q8TB68 274 aa9.05□□□□□ -0.96
CCDC54-201ENST00000261058 UBTFP17480 764 aaKnown RBP9.04□□□□□ -0.96
CCDC54-201ENST00000261058 HELBQ8NG08 1087 aaPredicted RBP9.04□□□□□ -0.96
CCDC54-201ENST00000261058 GJD4Q96KN9 370 aaPredicted RBP9.04□□□□□ -0.96
CCDC54-201ENST00000261058 USB1Q9BQ65 265 aaKnown RBP9.04□□□□□ -0.96
CCDC54-201ENST00000261058 FMNL1O95466 1100 aaPredicted RBP9.03□□□□□ -0.96
CCDC54-201ENST00000261058 FNBP4Q8N3X1 1017 aaPredicted RBP9.02□□□□□ -0.97
CCDC54-201ENST00000261058 CLUAP1Q96AJ1 413 aa9.02□□□□□ -0.97
CCDC54-201ENST00000261058 POM121Q96HA1 1249 aa9.02□□□□□ -0.97
CCDC54-201ENST00000261058 COG6Q9Y2V7 657 aa9.02□□□□□ -0.97
CCDC54-201ENST00000261058 MSS51Q4VC12 460 aa9.01□□□□□ -0.97
CCDC54-201ENST00000261058 TJAP1Q5JTD0 557 aa9.01□□□□□ -0.97
CCDC54-201ENST00000261058 TRIM34Q9BYJ4 488 aa9.01□□□□□ -0.97
CCDC54-201ENST00000261058 HMX1Q9NP08 348 aaPredicted RBP9.01□□□□□ -0.97
CCDC54-201ENST00000261058 PTPN5P54829 565 aa9□□□□□ -0.97
CCDC54-201ENST00000261058 MTRQ99707 1265 aa9□□□□□ -0.97
CCDC54-201ENST00000261058 APBB1O00213 710 aa8.99□□□□□ -0.97
CCDC54-201ENST00000261058 PER1O15534 1290 aaPredicted RBP8.99□□□□□ -0.97
CCDC54-201ENST00000261058 GPR37L1O60883 481 aa8.99□□□□□ -0.97
CCDC54-201ENST00000261058 ZPR1O75312 459 aa8.99□□□□□ -0.97
CCDC54-201ENST00000261058 COPS2P61201 443 aa8.99□□□□□ -0.97
CCDC54-201ENST00000261058 LYPD8Q6UX82 237 aa8.99□□□□□ -0.97
CCDC54-201ENST00000261058 FAM160A2Q8N612 972 aaPredicted RBP8.99□□□□□ -0.97
CCDC54-201ENST00000261058 LRRN4Q8WUT4 740 aa8.99□□□□□ -0.97
CCDC54-201ENST00000261058 MMP16P51512 607 aa8.97□□□□□ -0.97
CCDC54-201ENST00000261058 SPSB2Q99619 263 aa8.97□□□□□ -0.97
CCDC54-201ENST00000261058 TRAK2O60296 914 aa8.97□□□□□ -0.97
CCDC54-201ENST00000261058 DXOO77932 396 aaKnown RBP8.97□□□□□ -0.97
CCDC54-201ENST00000261058 JUNDP17535 347 aa8.97□□□□□ -0.97
CCDC54-201ENST00000261058 PROSER2Q86WR7 435 aaPredicted RBP8.97□□□□□ -0.97
CCDC54-201ENST00000261058 IL21Q9HBE4 155 aa8.97□□□□□ -0.97
CCDC54-201ENST00000261058 RAD21O60216 631 aa8.96□□□□□ -0.98
CCDC54-201ENST00000261058 ADH1BP00325 375 aa8.96□□□□□ -0.98
CCDC54-201ENST00000261058 PTPRNQ16849 979 aa8.96□□□□□ -0.98
CCDC54-201ENST00000261058 IFFO2Q5TF58 517 aa8.96□□□□□ -0.98
CCDC54-201ENST00000261058 TSC1Q92574 1164 aa8.96□□□□□ -0.98
CCDC54-201ENST00000261058 GDPD2Q9HCC8 539 aa8.96□□□□□ -0.98
CCDC54-201ENST00000261058 TLL1O43897 1013 aa8.95□□□□□ -0.98
CCDC54-201ENST00000261058 F12P00748 615 aaPredicted RBP8.95□□□□□ -0.98
CCDC54-201ENST00000261058 ZNF516Q92618 1163 aa8.95□□□□□ -0.98
CCDC54-201ENST00000261058 TBC1D2BQ9UPU7 963 aa8.95□□□□□ -0.98
CCDC54-201ENST00000261058 NDUFB9Q9Y6M9 179 aa8.95□□□□□ -0.98
CCDC54-201ENST00000261058 EPS8L1Q8TE68 723 aa8.94□□□□□ -0.98
CCDC54-201ENST00000261058 SUPT5HO00267 1087 aaKnown RBP8.93□□□□□ -0.98
CCDC54-201ENST00000261058 RGS20O76081 388 aa8.93□□□□□ -0.98
CCDC54-201ENST00000261058 ITGBL1O95965 494 aaPredicted RBP8.93□□□□□ -0.98
CCDC54-201ENST00000261058 PRDM9Q9NQV7 894 aa8.93□□□□□ -0.98
CCDC54-201ENST00000261058 IRF5Q13568 498 aa8.92□□□□□ -0.98
CCDC54-201ENST00000261058 C1orf115Q9H7X2 142 aa8.92□□□□□ -0.98
CCDC54-201ENST00000261058 PRM3Q9NNZ6 103 aa8.92□□□□□ -0.98
CCDC54-201ENST00000261058 NR6A1Q15406 480 aa8.9□□□□□ -0.98
CCDC54-201ENST00000261058 CCNYL3P0C7X3 344 aa8.89□□□□□ -0.99
CCDC54-201ENST00000261058 EVA1BQ9NVM1 165 aa8.89□□□□□ -0.99
CCDC54-201ENST00000261058 NKX2-3Q8TAU0 364 aa8.88□□□□□ -0.99
CCDC54-201ENST00000261058 ABL2P42684 1182 aa8.88□□□□□ -0.99
CCDC54-201ENST00000261058 NUDT12Q9BQG2 462 aa8.88□□□□□ -0.99
CCDC54-201ENST00000261058 SLC6A16Q9GZN6 736 aa8.88□□□□□ -0.99
CCDC54-201ENST00000261058 MAP10Q9P2G4 905 aa8.88□□□□□ -0.99
CCDC54-201ENST00000261058 A0A0G2JS52 829 aa8.86□□□□□ -0.99
CCDC54-201ENST00000261058 KCNH2Q12809 1159 aa8.86□□□□□ -0.99
CCDC54-201ENST00000261058 ZC3H4Q9UPT8 1303 aaKnown RBP8.85□□□□□ -0.99
CCDC54-201ENST00000261058 ARID3CA6NKF2 412 aa8.85□□□□□ -0.99
CCDC54-201ENST00000261058 KCNC4Q03721 635 aa8.85□□□□□ -0.99
CCDC54-201ENST00000261058 FKBPLQ9UIM3 349 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms