RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 LAMC1P11047 1609 aa31.13■■■□□ 2.57
NEDD8-201ENST00000250495 WAPLQ7Z5K2 1190 aa31.13■■■□□ 2.57
NEDD8-201ENST00000250495 AFF2P51816 1311 aa31.13■■■□□ 2.57
NEDD8-201ENST00000250495 TECPR2O15040 1411 aa31.13■■■□□ 2.57
NEDD8-201ENST00000250495 PIK3C2GO75747 1445 aa31.13■■■□□ 2.57
NEDD8-201ENST00000250495 ESCO1Q5FWF5 840 aa31.12■■■□□ 2.57
NEDD8-201ENST00000250495 RAB3GAP2Q9H2M9 1393 aa31.11■■■□□ 2.57
NEDD8-201ENST00000250495 C8orf37Q96NL8 207 aa31.1■■■□□ 2.57
NEDD8-201ENST00000250495 C14orf93Q9H972 538 aaKnown RBP31.09■■■□□ 2.57
NEDD8-201ENST00000250495 CDC42BPGQ6DT37 1551 aa31.09■■■□□ 2.57
NEDD8-201ENST00000250495 NPHP3Q7Z494 1330 aa31.07■■■□□ 2.56
NEDD8-201ENST00000250495 SIRT1Q96EB6 747 aa31.07■■■□□ 2.56
NEDD8-201ENST00000250495 YTHDC2Q9H6S0 1430 aaKnown RBP31.06■■■□□ 2.56
NEDD8-201ENST00000250495 ADAMTS2O95450 1211 aa31.04■■■□□ 2.56
NEDD8-201ENST00000250495 NGLY1Q96IV0 654 aa31.04■■■□□ 2.56
NEDD8-201ENST00000250495 KNDC1Q76NI1 1749 aa31.04■■■□□ 2.56
NEDD8-201ENST00000250495 QTRT2Q9H974 415 aaKnown RBP31.03■■■□□ 2.56
NEDD8-201ENST00000250495 NUTM2FA1L443 756 aa31.02■■■□□ 2.56
NEDD8-201ENST00000250495 CFAP70Q5T0N1 1121 aa31.02■■■□□ 2.56
NEDD8-201ENST00000250495 DHX57Q6P158 1386 aaKnown RBP31.02■■■□□ 2.56
NEDD8-201ENST00000250495 PLEKHH1Q9ULM0 1364 aa31.02■■■□□ 2.56
NEDD8-201ENST00000250495 FOXO3O43524 673 aa31.01■■■□□ 2.55
NEDD8-201ENST00000250495 MYOM2P54296 1465 aa31■■■□□ 2.55
NEDD8-201ENST00000250495 NRXN1Q9ULB1 1477 aa31■■■□□ 2.55
NEDD8-201ENST00000250495 CDK12Q9NYV4 1490 aaPredicted RBP30.99■■■□□ 2.55
NEDD8-201ENST00000250495 HRCP23327 699 aa30.98■■■□□ 2.55
NEDD8-201ENST00000250495 RBM6P78332 1123 aaKnown RBP30.98■■■□□ 2.55
NEDD8-201ENST00000250495 UPF1Q92900 1129 aaKnown RBP eCLIP30.94■■■□□ 2.543e-7■□□□□ 10.1
NEDD8-201ENST00000250495 XPCQ01831 940 aaPredicted RBP30.93■■■□□ 2.54
NEDD8-201ENST00000250495 PXDNQ92626 1479 aa30.93■■■□□ 2.54
NEDD8-201ENST00000250495 USP21Q9UK80 565 aa30.92■■■□□ 2.54
NEDD8-201ENST00000250495 COL22A1Q8NFW1 1626 aaPredicted RBP30.91■■■□□ 2.54
NEDD8-201ENST00000250495 FMN2Q9NZ56 1722 aa30.9■■■□□ 2.54
NEDD8-201ENST00000250495 FNBP4Q8N3X1 1017 aaPredicted RBP30.9■■■□□ 2.54
NEDD8-201ENST00000250495 PRAM1Q96QH2 718 aa30.89■■■□□ 2.54
NEDD8-201ENST00000250495 STAC3Q96MF2 364 aa30.88■■■□□ 2.53
NEDD8-201ENST00000250495 POGKQ9P215 609 aa30.88■■■□□ 2.53
NEDD8-201ENST00000250495 TRPC5Q9UL62 973 aaPredicted RBP30.88■■■□□ 2.53
NEDD8-201ENST00000250495 KDM2AQ9Y2K7 1162 aa30.87■■■□□ 2.53
NEDD8-201ENST00000250495 SAFB2Q14151 953 aaKnown RBP eCLIP30.86■■■□□ 2.53
NEDD8-201ENST00000250495 DCAF11Q8TEB1 546 aa30.86■■■□□ 2.53
NEDD8-201ENST00000250495 KRT28Q7Z3Y7 464 aa30.85■■■□□ 2.53
NEDD8-201ENST00000250495 KIF1AQ12756 1690 aa30.84■■■□□ 2.53
NEDD8-201ENST00000250495 PHF8Q9UPP1 1060 aa30.84■■■□□ 2.53
NEDD8-201ENST00000250495 SPATA31A3Q5VYP0 1347 aa30.83■■■□□ 2.53
NEDD8-201ENST00000250495 DLC1Q96QB1 1528 aa30.83■■■□□ 2.53
NEDD8-201ENST00000250495 RGS12O14924 1447 aa30.82■■■□□ 2.52
NEDD8-201ENST00000250495 PSME1Q06323 249 aa30.82■■■□□ 2.52
NEDD8-201ENST00000250495 TRAK1Q9UPV9 953 aa30.8■■■□□ 2.52
NEDD8-201ENST00000250495 RGPD8O14715 1765 aaPredicted RBP30.78■■■□□ 2.52
NEDD8-201ENST00000250495 ADGRB1O14514 1584 aa30.77■■■□□ 2.52
NEDD8-201ENST00000250495 ATRNO75882 1429 aa30.76■■■□□ 2.51
NEDD8-201ENST00000250495 MARF1Q9Y4F3 1742 aaKnown RBP30.75■■■□□ 2.51
NEDD8-201ENST00000250495 BCL9LQ86UU0 1499 aa30.73■■■□□ 2.51
NEDD8-201ENST00000250495 ANKARQ7Z5J8 1434 aa30.73■■■□□ 2.51
NEDD8-201ENST00000250495 HAP1P54257 671 aaPredicted RBP30.71■■■□□ 2.51
NEDD8-201ENST00000250495 SBNO1A3KN83 1393 aa30.7■■■□□ 2.51
NEDD8-201ENST00000250495 PMFBP1Q8TBY8 1022 aa30.7■■■□□ 2.51
NEDD8-201ENST00000250495 HIRIP3Q9BW71 556 aaPredicted RBP30.7■■■□□ 2.51
NEDD8-201ENST00000250495 TNS3Q68CZ2 1445 aa30.7■■■□□ 2.5
NEDD8-201ENST00000250495 MINK1Q8N4C8 1332 aaPredicted RBP30.7■■■□□ 2.5
NEDD8-201ENST00000250495 EIF3AQ14152 1382 aaKnown RBP30.68■■■□□ 2.5
NEDD8-201ENST00000250495 ADGRB2O60241 1585 aa30.68■■■□□ 2.5
NEDD8-201ENST00000250495 LMOD2Q6P5Q4 547 aa30.68■■■□□ 2.5
NEDD8-201ENST00000250495 UNC5CLQ8IV45 518 aa30.68■■■□□ 2.5
NEDD8-201ENST00000250495 GJD4Q96KN9 370 aaPredicted RBP30.68■■■□□ 2.5
NEDD8-201ENST00000250495 ATAD2Q6PL18 1390 aa30.66■■■□□ 2.5
NEDD8-201ENST00000250495 WASLO00401 505 aaPredicted RBP30.66■■■□□ 2.5
NEDD8-201ENST00000250495 ARHGEF10O15013 1369 aa30.66■■■□□ 2.5
NEDD8-201ENST00000250495 USP32Q8NFA0 1604 aa30.64■■■□□ 2.5
NEDD8-201ENST00000250495 CABLES1Q8TDN4 633 aa30.63■■■□□ 2.49
NEDD8-201ENST00000250495 SLIT2O94813 1529 aa30.63■■■□□ 2.49
NEDD8-201ENST00000250495 GPRASP1Q5JY77 1395 aa30.61■■■□□ 2.49
NEDD8-201ENST00000250495 PLEKHG5O94827 1062 aa30.6■■■□□ 2.49
NEDD8-201ENST00000250495 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.6■■■□□ 2.49
NEDD8-201ENST00000250495 PRR36Q9H6K5 1346 aa30.59■■■□□ 2.49
NEDD8-201ENST00000250495 TULP4Q9NRJ4 1543 aa30.58■■■□□ 2.49
NEDD8-201ENST00000250495 NGDNQ8NEJ9 315 aaKnown RBP30.56■■■□□ 2.48
NEDD8-201ENST00000250495 RALGAPBQ86X10 1494 aa30.53■■■□□ 2.48
NEDD8-201ENST00000250495 VPS72Q15906 364 aa30.53■■■□□ 2.48
NEDD8-201ENST00000250495 ARHGEF28Q8N1W1 1705 aaKnown RBP30.53■■■□□ 2.48
NEDD8-201ENST00000250495 CCDC125Q86Z20 511 aa30.52■■■□□ 2.48
NEDD8-201ENST00000250495 NUDT16Q96DE0 195 aaKnown RBP30.52■■■□□ 2.48
NEDD8-201ENST00000250495 FAM83GA6ND36 823 aa30.5■■■□□ 2.47
NEDD8-201ENST00000250495 TRPM3Q9HCF6 1732 aaPredicted RBP30.5■■■□□ 2.47
NEDD8-201ENST00000250495 CDK19Q9BWU1 502 aa30.49■■■□□ 2.47
NEDD8-201ENST00000250495 GLI3P10071 1580 aa30.49■■■□□ 2.47
NEDD8-201ENST00000250495 NWD2Q9ULI1 1742 aa30.48■■■□□ 2.47
NEDD8-201ENST00000250495 KIAA1210Q9ULL0 1709 aa30.48■■■□□ 2.47
NEDD8-201ENST00000250495 PAK3O75914 559 aaPredicted RBP30.48■■■□□ 2.47
NEDD8-201ENST00000250495 CCDC9Q9Y3X0 531 aaKnown RBP30.48■■■□□ 2.47
NEDD8-201ENST00000250495 ABCA3Q99758 1704 aa30.47■■■□□ 2.47
NEDD8-201ENST00000250495 NBPF1Q3BBV0 1214 aa30.45■■■□□ 2.47
NEDD8-201ENST00000250495 PLCH1Q4KWH8 1693 aa30.45■■■□□ 2.46
NEDD8-201ENST00000250495 ALS2Q96Q42 1657 aa30.45■■■□□ 2.46
NEDD8-201ENST00000250495 SEPT12Q8IYM1 358 aa30.44■■■□□ 2.46
NEDD8-201ENST00000250495 ITSN1Q15811 1721 aa30.44■■■□□ 2.46
NEDD8-201ENST00000250495 ONECUT3O60422 494 aaPredicted RBP30.43■■■□□ 2.46
NEDD8-201ENST00000250495 ATP7BP35670 1465 aa30.43■■■□□ 2.46
NEDD8-201ENST00000250495 CCDC61Q9Y6R9 512 aa30.42■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms