RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 ATF5Q9Y2D1 282 aaPredicted RBP16.35■□□□□ 0.21
SF3B6-201ENST00000233468 SETBP1Q9Y6X0 1596 aa16.34■□□□□ 0.21
SF3B6-201ENST00000233468 KIF1BO60333 1816 aa16.34■□□□□ 0.21
SF3B6-201ENST00000233468 SPATA31A6Q5VVP1 1343 aa16.33■□□□□ 0.2
SF3B6-201ENST00000233468 NEXMIFQ5QGS0 1516 aa16.33■□□□□ 0.2
SF3B6-201ENST00000233468 MEX3CQ5U5Q3 659 aaKnown RBP16.32■□□□□ 0.2
SF3B6-201ENST00000233468 DHX57Q6P158 1386 aaKnown RBP16.32■□□□□ 0.2
SF3B6-201ENST00000233468 DDX17Q92841 729 aaKnown RBP16.32■□□□□ 0.2
SF3B6-201ENST00000233468 NUTM2BA6NNL0 878 aaPredicted RBP16.31■□□□□ 0.2
SF3B6-201ENST00000233468 NUTM2EB1AL46 878 aaPredicted RBP16.31■□□□□ 0.2
SF3B6-201ENST00000233468 NUTM2AQ8IVF1 878 aaPredicted RBP16.31■□□□□ 0.2
SF3B6-201ENST00000233468 NALCNQ8IZF0 1738 aa16.31■□□□□ 0.2
SF3B6-201ENST00000233468 ASXL1Q8IXJ9 1541 aa16.3■□□□□ 0.2
SF3B6-201ENST00000233468 MST1RQ04912 1400 aa16.3■□□□□ 0.2
SF3B6-201ENST00000233468 ATXN8OSP0DMR3 200 aa16.3■□□□□ 0.2
SF3B6-201ENST00000233468 DCAF11Q8TEB1 546 aa16.29■□□□□ 0.2
SF3B6-201ENST00000233468 NHSL1Q5SYE7 1610 aa16.29■□□□□ 0.2
SF3B6-201ENST00000233468 ADGRF5Q8IZF2 1346 aa16.28■□□□□ 0.2
SF3B6-201ENST00000233468 DCCP43146 1447 aa16.28■□□□□ 0.2
SF3B6-201ENST00000233468 ZNF772Q68DY9 489 aaPredicted RBP16.26■□□□□ 0.19
SF3B6-201ENST00000233468 KDM2AQ9Y2K7 1162 aa16.26■□□□□ 0.19
SF3B6-201ENST00000233468 MYOM2P54296 1465 aa16.25■□□□□ 0.19
SF3B6-201ENST00000233468 NEUROD1Q13562 356 aa16.25■□□□□ 0.19
SF3B6-201ENST00000233468 C14orf93Q9H972 538 aaKnown RBP16.24■□□□□ 0.19
SF3B6-201ENST00000233468 ADGRL3Q9HAR2 1447 aa16.24■□□□□ 0.19
SF3B6-201ENST00000233468 AFF2P51816 1311 aa16.23■□□□□ 0.19
SF3B6-201ENST00000233468 PIK3C2GO75747 1445 aa16.23■□□□□ 0.19
SF3B6-201ENST00000233468 UPF1Q92900 1129 aaKnown RBP eCLIP16.23■□□□□ 0.19
SF3B6-201ENST00000233468 SIN3AQ96ST3 1273 aa16.23■□□□□ 0.19
SF3B6-201ENST00000233468 CLSPNQ9HAW4 1339 aa16.22■□□□□ 0.19
SF3B6-201ENST00000233468 RXRBP28702 533 aa16.21■□□□□ 0.19
SF3B6-201ENST00000233468 LRRC59Q96AG4 307 aaKnown RBP16.21■□□□□ 0.19
SF3B6-201ENST00000233468 NRXN1Q9ULB1 1477 aa16.21■□□□□ 0.19
SF3B6-201ENST00000233468 PPLO60437 1756 aa16.21■□□□□ 0.18
SF3B6-201ENST00000233468 POLA2Q14181 598 aa16.2■□□□□ 0.18
SF3B6-201ENST00000233468 PNPLA6Q8IY17 1366 aa16.2■□□□□ 0.18
SF3B6-201ENST00000233468 ROBO2Q9HCK4 1378 aa16.2■□□□□ 0.18
SF3B6-201ENST00000233468 C1orf167Q5SNV9 1468 aa16.2■□□□□ 0.18
SF3B6-201ENST00000233468 C8orf37Q96NL8 207 aa16.19■□□□□ 0.18
SF3B6-201ENST00000233468 ORAI2Q96SN7 254 aa16.19■□□□□ 0.18
SF3B6-201ENST00000233468 CFAP70Q5T0N1 1121 aa16.18■□□□□ 0.18
SF3B6-201ENST00000233468 L3MBTL2Q969R5 705 aa16.18■□□□□ 0.18
SF3B6-201ENST00000233468 TONSLQ96HA7 1378 aa16.17■□□□□ 0.18
SF3B6-201ENST00000233468 LRPPRCP42704 1394 aaKnown RBP16.16■□□□□ 0.18
SF3B6-201ENST00000233468 ADAMTS2O95450 1211 aa16.16■□□□□ 0.18
SF3B6-201ENST00000233468 TMEM132EQ6IEE7 984 aa16.16■□□□□ 0.18
SF3B6-201ENST00000233468 CCER1Q8TC90 406 aaPredicted RBP16.16■□□□□ 0.18
SF3B6-201ENST00000233468 SIRT1Q96EB6 747 aa16.16■□□□□ 0.18
SF3B6-201ENST00000233468 QTRT2Q9H974 415 aaKnown RBP16.16■□□□□ 0.18
SF3B6-201ENST00000233468 STK26Q9P289 416 aa16.16■□□□□ 0.18
SF3B6-201ENST00000233468 LAMC1P11047 1609 aa16.16■□□□□ 0.18
SF3B6-201ENST00000233468 ABCC11Q96J66 1382 aa16.15■□□□□ 0.18
SF3B6-201ENST00000233468 PTCH1Q13635 1447 aa16.15■□□□□ 0.18
SF3B6-201ENST00000233468 PRAG1Q86YV5 1406 aa16.14■□□□□ 0.17
SF3B6-201ENST00000233468 TIMELESSQ9UNS1 1208 aa16.14■□□□□ 0.17
SF3B6-201ENST00000233468 IFT172Q9UG01 1749 aa16.14■□□□□ 0.17
SF3B6-201ENST00000233468 YTHDC2Q9H6S0 1430 aaKnown RBP16.13■□□□□ 0.17
SF3B6-201ENST00000233468 CDK12Q9NYV4 1490 aaPredicted RBP16.13■□□□□ 0.17
SF3B6-201ENST00000233468 RGS12O14924 1447 aa16.12■□□□□ 0.17
SF3B6-201ENST00000233468 NGLY1Q96IV0 654 aa16.12■□□□□ 0.17
SF3B6-201ENST00000233468 SOS2Q07890 1332 aaPredicted RBP16.12■□□□□ 0.17
SF3B6-201ENST00000233468 TECPR2O15040 1411 aa16.11■□□□□ 0.17
SF3B6-201ENST00000233468 POGKQ9P215 609 aa16.1■□□□□ 0.17
SF3B6-201ENST00000233468 RBM6P78332 1123 aaKnown RBP16.09■□□□□ 0.17
SF3B6-201ENST00000233468 NUTM2FA1L443 756 aa16.08■□□□□ 0.16
SF3B6-201ENST00000233468 XPCQ01831 940 aaPredicted RBP16.08■□□□□ 0.16
SF3B6-201ENST00000233468 WAPLQ7Z5K2 1190 aa16.08■□□□□ 0.16
SF3B6-201ENST00000233468 EP400Q96L91 3159 aa16.07■□□□□ 0.16
SF3B6-201ENST00000233468 ESCO1Q5FWF5 840 aa16.07■□□□□ 0.16
SF3B6-201ENST00000233468 TRAK1Q9UPV9 953 aa16.07■□□□□ 0.16
SF3B6-201ENST00000233468 COL22A1Q8NFW1 1626 aaPredicted RBP16.07■□□□□ 0.16
SF3B6-201ENST00000233468 PRAM1Q96QH2 718 aa16.06■□□□□ 0.16
SF3B6-201ENST00000233468 USP21Q9UK80 565 aa16.06■□□□□ 0.16
SF3B6-201ENST00000233468 SRCAPQ6ZRS2 3230 aa16.06■□□□□ 0.16
SF3B6-201ENST00000233468 MARF1Q9Y4F3 1742 aaKnown RBP16.05■□□□□ 0.16
SF3B6-201ENST00000233468 PLEKHH1Q9ULM0 1364 aa16.05■□□□□ 0.16
SF3B6-201ENST00000233468 FOXO3O43524 673 aa16.05■□□□□ 0.16
SF3B6-201ENST00000233468 RGPD8O14715 1765 aaPredicted RBP16.05■□□□□ 0.16
SF3B6-201ENST00000233468 CDC42BPGQ6DT37 1551 aa16.04■□□□□ 0.16
SF3B6-201ENST00000233468 PXDNQ92626 1479 aa16.04■□□□□ 0.16
SF3B6-201ENST00000233468 ADGRB1O14514 1584 aa16.04■□□□□ 0.16
SF3B6-201ENST00000233468 ROCK2O75116 1388 aaKnown RBP16.03■□□□□ 0.16
SF3B6-201ENST00000233468 NBPF1Q3BBV0 1214 aa16.03■□□□□ 0.16
SF3B6-201ENST00000233468 FNBP4Q8N3X1 1017 aaPredicted RBP16.03■□□□□ 0.16
SF3B6-201ENST00000233468 DLC1Q96QB1 1528 aa16.03■□□□□ 0.16
SF3B6-201ENST00000233468 NPHP3Q7Z494 1330 aa16.01■□□□□ 0.15
SF3B6-201ENST00000233468 KNDC1Q76NI1 1749 aa16.01■□□□□ 0.15
SF3B6-201ENST00000233468 ATRNO75882 1429 aa16.01■□□□□ 0.15
SF3B6-201ENST00000233468 FMN2Q9NZ56 1722 aa16■□□□□ 0.15
SF3B6-201ENST00000233468 BCL9LQ86UU0 1499 aa16■□□□□ 0.15
SF3B6-201ENST00000233468 SAFB2Q14151 953 aaKnown RBP eCLIP16■□□□□ 0.15
SF3B6-201ENST00000233468 TRPC5Q9UL62 973 aaPredicted RBP16■□□□□ 0.15
SF3B6-201ENST00000233468 EIF3AQ14152 1382 aaKnown RBP16■□□□□ 0.15
SF3B6-201ENST00000233468 NBPF8Q3BBV2 869 aa15.99■□□□□ 0.15
SF3B6-201ENST00000233468 CARD11Q9BXL7 1154 aa15.99■□□□□ 0.15
SF3B6-201ENST00000233468 KIAA1210Q9ULL0 1709 aa15.99■□□□□ 0.15
SF3B6-201ENST00000233468 CENPJQ9HC77 1338 aaPredicted RBP15.96■□□□□ 0.15
SF3B6-201ENST00000233468 GPRASP1Q5JY77 1395 aa15.96■□□□□ 0.15
SF3B6-201ENST00000233468 ATAD2Q6PL18 1390 aa15.95■□□□□ 0.14
SF3B6-201ENST00000233468 MINK1Q8N4C8 1332 aaPredicted RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms