RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 NOS1P29475 1434 aa17.93■□□□□ 0.46
USH1C-201ENST00000005226 NGEFQ8N5V2 710 aa17.93■□□□□ 0.46
USH1C-201ENST00000005226 U2AF1L5P0DN76 240 aaPredicted RBP17.93■□□□□ 0.46
USH1C-201ENST00000005226 U2AF1Q01081 240 aaKnown RBP eCLIP17.93■□□□□ 0.46
USH1C-201ENST00000005226 TBC1D2Q9BYX2 928 aa17.93■□□□□ 0.46
USH1C-201ENST00000005226 SAFB2Q14151 953 aaKnown RBP eCLIP17.92■□□□□ 0.46
USH1C-201ENST00000005226 MAP3K4Q9Y6R4 1608 aa17.92■□□□□ 0.46
USH1C-201ENST00000005226 NLRP1Q9C000 1473 aa17.92■□□□□ 0.46
USH1C-201ENST00000005226 TET3O43151 1660 aa17.92■□□□□ 0.46
USH1C-201ENST00000005226 ANTXR1Q9H6X2 564 aa17.91■□□□□ 0.46
USH1C-201ENST00000005226 EIF5BO60841 1220 aaKnown RBP17.91■□□□□ 0.46
USH1C-201ENST00000005226 TBC1D32Q96NH3 1257 aa17.91■□□□□ 0.46
USH1C-201ENST00000005226 PHF23Q9BUL5 403 aaPredicted RBP17.9■□□□□ 0.46
USH1C-201ENST00000005226 SLC24A1O60721 1099 aa17.9■□□□□ 0.46
USH1C-201ENST00000005226 WDR63Q8IWG1 891 aa17.9■□□□□ 0.46
USH1C-201ENST00000005226 RWDD1Q9H446 243 aaPredicted RBP17.9■□□□□ 0.46
USH1C-201ENST00000005226 UPF2Q9HAU5 1272 aaKnown RBP17.9■□□□□ 0.46
USH1C-201ENST00000005226 CFAP65Q6ZU64 1925 aaKnown RBP17.89■□□□□ 0.45
USH1C-201ENST00000005226 ATP7AQ04656 1500 aa17.89■□□□□ 0.45
USH1C-201ENST00000005226 NINLQ9Y2I6 1382 aa17.89■□□□□ 0.45
USH1C-201ENST00000005226 GGT6Q6P531 493 aa17.89■□□□□ 0.45
USH1C-201ENST00000005226 FANCAO15360 1455 aa17.88■□□□□ 0.45
USH1C-201ENST00000005226 SHPRHQ149N8 1683 aa17.88■□□□□ 0.45
USH1C-201ENST00000005226 DEPDC5O75140 1603 aa17.87■□□□□ 0.45
USH1C-201ENST00000005226 GZF1Q9H116 711 aaPredicted RBP17.87■□□□□ 0.45
USH1C-201ENST00000005226 CABP2Q9NPB3 220 aa17.87■□□□□ 0.45
USH1C-201ENST00000005226 MFAP1P55081 439 aaKnown RBP17.87■□□□□ 0.45
USH1C-201ENST00000005226 MVPQ14764 893 aaKnown RBP17.87■□□□□ 0.45
USH1C-201ENST00000005226 FTSJ3Q8IY81 847 aaKnown RBP17.87■□□□□ 0.45
USH1C-201ENST00000005226 CFAP53Q96M91 514 aa17.87■□□□□ 0.45
USH1C-201ENST00000005226 KIAA1210Q9ULL0 1709 aa17.87■□□□□ 0.45
USH1C-201ENST00000005226 MYOM2P54296 1465 aa17.86■□□□□ 0.45
USH1C-201ENST00000005226 U2SURPO15042 1029 aaKnown RBP17.86■□□□□ 0.45
USH1C-201ENST00000005226 VIRMAQ69YN4 1812 aaKnown RBP17.86■□□□□ 0.45
USH1C-201ENST00000005226 EXOSC9Q06265 439 aaKnown RBP17.86■□□□□ 0.45
USH1C-201ENST00000005226 MROH2AA6NES4 1674 aa17.86■□□□□ 0.45
USH1C-201ENST00000005226 C14orf93Q9H972 538 aaKnown RBP17.85■□□□□ 0.45
USH1C-201ENST00000005226 VWDEQ8N2E2 1590 aa17.85■□□□□ 0.45
USH1C-201ENST00000005226 ZKSCAN2Q63HK3 967 aa17.85■□□□□ 0.45
USH1C-201ENST00000005226 DZIP1LQ8IYY4 767 aaKnown RBP17.85■□□□□ 0.45
USH1C-201ENST00000005226 MYH16Q9H6N6 1097 aa17.85■□□□□ 0.45
USH1C-201ENST00000005226 IQSEC2Q5JU85 1478 aa17.84■□□□□ 0.45
USH1C-201ENST00000005226 SMC4Q9NTJ3 1288 aa17.84■□□□□ 0.45
USH1C-201ENST00000005226 ADGRL1O94910 1474 aa17.83■□□□□ 0.45
USH1C-201ENST00000005226 MROH1Q8NDA8 1641 aa17.83■□□□□ 0.44
USH1C-201ENST00000005226 ITPRIPQ8IWB1 547 aa17.83■□□□□ 0.44
USH1C-201ENST00000005226 SSH1Q8WYL5 1049 aa17.82■□□□□ 0.44
USH1C-201ENST00000005226 GGNBP2Q9H3C7 697 aa17.82■□□□□ 0.44
USH1C-201ENST00000005226 KIF1BO60333 1816 aa17.82■□□□□ 0.44
USH1C-201ENST00000005226 ZNF518AQ6AHZ1 1483 aa17.82■□□□□ 0.44
USH1C-201ENST00000005226 SBNO2Q9Y2G9 1366 aa17.82■□□□□ 0.44
USH1C-201ENST00000005226 TRIM27P14373 513 aa17.82■□□□□ 0.44
USH1C-201ENST00000005226 STK26Q9P289 416 aa17.82■□□□□ 0.44
USH1C-201ENST00000005226 C22orf23Q9BZE7 217 aa17.81■□□□□ 0.44
USH1C-201ENST00000005226 CCDC27Q2M243 656 aa17.81■□□□□ 0.44
USH1C-201ENST00000005226 UHRF1BP1LA0JNW5 1464 aa17.81■□□□□ 0.44
USH1C-201ENST00000005226 FAM43AQ8N2R8 423 aa17.8■□□□□ 0.44
USH1C-201ENST00000005226 RRAGDQ9NQL2 400 aaPredicted RBP17.8■□□□□ 0.44
USH1C-201ENST00000005226 NOB1Q9ULX3 412 aaKnown RBP17.8■□□□□ 0.44
USH1C-201ENST00000005226 INO80Q9ULG1 1556 aaPredicted RBP17.8■□□□□ 0.44
USH1C-201ENST00000005226 NRXN1Q9ULB1 1477 aa17.79■□□□□ 0.44
USH1C-201ENST00000005226 PPRC1Q5VV67 1664 aaKnown RBP17.78■□□□□ 0.44
USH1C-201ENST00000005226 TRIM35Q9UPQ4 493 aa17.78■□□□□ 0.44
USH1C-201ENST00000005226 EFCAB6Q5THR3 1501 aa17.78■□□□□ 0.44
USH1C-201ENST00000005226 TMPOP42166 694 aaKnown RBP17.78■□□□□ 0.44
USH1C-201ENST00000005226 AAMPQ13685 434 aa17.78■□□□□ 0.44
USH1C-201ENST00000005226 MCM4P33991 863 aa17.77■□□□□ 0.44
USH1C-201ENST00000005226 TMEM57Q8N5G2 664 aa17.77■□□□□ 0.44
USH1C-201ENST00000005226 PANK2Q9BZ23 570 aa17.77■□□□□ 0.44
USH1C-201ENST00000005226 IFT172Q9UG01 1749 aa17.76■□□□□ 0.43
USH1C-201ENST00000005226 XRCC6P12956 609 aaKnown RBP eCLIP17.76■□□□□ 0.43
USH1C-201ENST00000005226 QRICH2Q9H0J4 1663 aa17.76■□□□□ 0.43
USH1C-201ENST00000005226 EVC2Q86UK5 1308 aa17.76■□□□□ 0.43
USH1C-201ENST00000005226 FBLN1P23142 703 aa17.75■□□□□ 0.43
USH1C-201ENST00000005226 PLEKHF1Q96S99 279 aa17.75■□□□□ 0.43
USH1C-201ENST00000005226 MYO3AQ8NEV4 1616 aa17.75■□□□□ 0.43
USH1C-201ENST00000005226 SRPK2P78362 688 aaKnown RBP17.75■□□□□ 0.43
USH1C-201ENST00000005226 ATF7IPQ6VMQ6 1270 aa17.75■□□□□ 0.43
USH1C-201ENST00000005226 NPATQ14207 1427 aa17.75■□□□□ 0.43
USH1C-201ENST00000005226 CD109Q6YHK3 1445 aa17.74■□□□□ 0.43
USH1C-201ENST00000005226 RIPK4P57078 832 aa17.74■□□□□ 0.43
USH1C-201ENST00000005226 LNPKQ9C0E8 428 aa17.74■□□□□ 0.43
USH1C-201ENST00000005226 ADGRB1O14514 1584 aa17.73■□□□□ 0.43
USH1C-201ENST00000005226 ADGRB3O60242 1522 aa17.72■□□□□ 0.43
USH1C-201ENST00000005226 ARAP3Q8WWN8 1544 aa17.72■□□□□ 0.43
USH1C-201ENST00000005226 L1TD1Q5T7N2 865 aaKnown RBP17.72■□□□□ 0.43
USH1C-201ENST00000005226 NEURL4Q96JN8 1562 aa17.72■□□□□ 0.43
USH1C-201ENST00000005226 ANKRD36BQ8N2N9 1353 aa17.72■□□□□ 0.43
USH1C-201ENST00000005226 ABCA9Q8IUA7 1624 aa17.72■□□□□ 0.43
USH1C-201ENST00000005226 GOLGA6L3A6NEY3 463 aa17.71■□□□□ 0.43
USH1C-201ENST00000005226 DDX19BQ9UMR2 479 aa17.71■□□□□ 0.43
USH1C-201ENST00000005226 TRAK2O60296 914 aa17.71■□□□□ 0.43
USH1C-201ENST00000005226 HDAC1Q13547 482 aaPredicted RBP17.71■□□□□ 0.43
USH1C-201ENST00000005226 CHMP5Q9NZZ3 219 aa17.71■□□□□ 0.43
USH1C-201ENST00000005226 MINK1Q8N4C8 1332 aaPredicted RBP17.71■□□□□ 0.43
USH1C-201ENST00000005226 SETBP1Q9Y6X0 1596 aa17.7■□□□□ 0.42
USH1C-201ENST00000005226 A0A1W2PP64 1363 aa17.7■□□□□ 0.42
USH1C-201ENST00000005226 FOXD4L1Q9NU39 408 aa17.7■□□□□ 0.42
USH1C-201ENST00000005226 KIDINS220Q9ULH0 1771 aa17.7■□□□□ 0.42
USH1C-201ENST00000005226 TULP4Q9NRJ4 1543 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms