RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 RASA4O43374 803 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ATP9AO75110 1047 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MT-ND3P03897 115 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 KRT1P04264 644 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ALDH2P05091 517 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 KLK3P07288 261 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SFTPCP11686 197 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MTHFRP42898 656 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 NDUFV1P49821 464 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ADCY2Q08462 1091 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MORF4L2Q15014 288 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF284Q2VY69 593 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 FAM45BPQ6NSW5 357 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 EXOC3L1Q86VI1 746 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 FAM133AQ8N9E0 248 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 STARD8Q92502 1023 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PABPC5Q96DU9 382 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MTERF3Q96E29 417 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 BTBD6Q96KE9 485 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SAMD11Q96NU1 681 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 RPRD1AQ96P16 312 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 STRBPQ96SI9 672 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 STRADBQ9C0K7 418 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TIMMDC1Q9NPL8 285 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 RABGEF1Q9UJ41 708 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF112Q9UJU3 913 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 THADAQ6YHU6 1953 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ITSN2Q9NZM3 1697 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 EXTL3O43909 919 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 IRF2P14316 349 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CCND1P24385 295 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PCSK1P29120 753 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SLC1A6P48664 564 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CLCQ05315 142 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ZNHIT3Q15649 155 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 FAM189A2Q15884 450 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SMU1Q2TAY7 513 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TTMPQ5BVD1 217 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 USP17L2Q6R6M4 530 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 Q6ZUG5 572 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 RRAGAQ7L523 313 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CATSPER4Q7RTX7 472 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 NLRP14Q86W24 1093 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 DCP1BQ8IZD4 617 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TAB3Q8N5C8 712 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TSPAN14Q8NG11 270 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ENKURQ8TC29 256 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 BHMTQ93088 406 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 NUDT9Q9BW91 350 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TBC1D14Q9P2M4 693 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ANKRD31Q8N7Z5 1873 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 EXOC1LA0A1B0GW35 172 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 BTBD17A6NE02 478 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MAGEB3O15480 346 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 BAIAP3O94812 1187 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CYP19A1P11511 503 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SFNP31947 248 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PNPLA4P41247 253 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ICA1Q05084 483 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SGSM1Q2NKQ1 1148 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 DEFB115Q30KQ5 88 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PDSS1Q5T2R2 415 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF790Q6PG37 636 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TCAIMQ8N3R3 496 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SERHL2Q9H4I8 314 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SERHLQ9NQF3 203 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ZMAT5Q9UDW3 170 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 XDHP47989 1333 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 KLF18A0A0U1RQI7 1052 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 WASHC1A8K0Z3 465 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 WASH3PC4AMC7 463 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 FOXP2O15409 715 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 AGXTP21549 392 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SERPINB4P48594 390 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 APLP1P51693 650 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 BCAR1P56945 870 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SLC6A3Q01959 620 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ANKRD40Q6AI12 368 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 WASH2PQ6VEQ5 465 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 THNSL1Q8IYQ7 743 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 FTMTQ8N4E7 242 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 BCAS3Q9H6U6 928 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ARL8BQ9NVJ2 186 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 NKIRAS2Q9NYR9 191 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PLAAQ9Y263 795 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 FHOD1Q9Y613 1164 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 RRN3P2A6NIE6 340 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 H0YGN5 161 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PSTPIP1O43586 416 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ECEL1O95672 775 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 AKAP5P24588 427 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ADSLP30566 484 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TAS2R50P59544 299 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 BIKQ13323 160 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MAPK6Q16659 721 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CENPUQ71F23 418 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PHACTR4Q8IZ21 702 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC24Q8N4L8 307 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 BRIX1Q8TDN6 353 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SGCDQ92629 289 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms