RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 PARVAQ9NVD7 372 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 APOBEC2Q9Y235 224 aaKnown RBP5.21□□□□□ -1.57
SCN1A-218ENST00000640036 Q9Y3F1 56 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 FHOD1Q9Y613 1164 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF318Q5VUA4 2279 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 NEDD4P46934 1319 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 HEATR9A2RTY3 570 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 SUPT3HB4E1H0 165 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 EPHX1P07099 455 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 ANXA5P08758 320 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 EEF1GP26641 437 aaKnown RBP5.21□□□□□ -1.57
SCN1A-218ENST00000640036 RPL21P46778 160 aaKnown RBP5.21□□□□□ -1.57
SCN1A-218ENST00000640036 GAD2Q05329 585 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 IRF5Q13568 498 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 SIM2Q14190 667 aaPredicted RBP5.21□□□□□ -1.57
SCN1A-218ENST00000640036 TCEA2Q15560 299 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 SPDYE7PQ495Y7 208 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF658Q5TYW1 1059 aaPredicted RBP5.21□□□□□ -1.57
SCN1A-218ENST00000640036 ALKBH2Q6NS38 261 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 FUT10Q6P4F1 479 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 ATG9AQ7Z3C6 839 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 KRT222Q8N1A0 295 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 PPHLN1Q8NEY8 458 aaKnown RBP5.21□□□□□ -1.57
SCN1A-218ENST00000640036 EEF2KMTQ96G04 330 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 LZTFL1Q9NQ48 299 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.21□□□□□ -1.57
SCN1A-218ENST00000640036 TSR3Q9UJK0 312 aaKnown RBP5.21□□□□□ -1.57
SCN1A-218ENST00000640036 ANAPC7Q9UJX3 599 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 GPSM3Q9Y4H4 160 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 GRXCR2A6NFK2 248 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 KRIT1O00522 736 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 TTI1O43156 1089 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 HS6ST1O60243 411 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PALMO75781 387 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 TTC4O95801 387 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 SERPINA4P29622 427 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 CLK3P49761 638 aaKnown RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 CDH6P55285 790 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 SNRNP35Q16560 246 aaKnown RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PHF19Q5T6S3 580 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 USP45Q70EL2 814 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 TTC7BQ86TV6 843 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 CYP4X1Q8N118 509 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PHOSPHO2Q8TCD6 241 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 ALDH8A1Q9H2A2 487 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 CHMP2BQ9UQN3 213 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 CNTNAP1P78357 1384 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 GTF2E2P29084 291 aaKnown RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PBLDP30039 288 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 LIG3P49916 1009 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 AARS2Q5JTZ9 985 aaKnown RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 BEND7Q8N7W2 519 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 LY9Q9HBG7 655 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 HSPBP1Q9NZL4 362 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 DNPEPQ9ULA0 475 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 MYO5BQ9ULV0 1848 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 A0A087WWV3 80 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PVALEFA0A1B0GWK0 134 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 CPED1A4D0V7 1026 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PRR5-ARHGAP8B1AHC4 643 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 FGFR4P22455 802 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 RPA1P27694 616 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 MAPK8P45983 427 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 TM4SF4P48230 202 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 ATP1A2P50993 1020 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 BCL2L1Q07817 233 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PDCLQ13371 301 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 TAF8Q7Z7C8 310 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 TBC1D10CQ8IV04 446 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 CDKL3Q8IVW4 592 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 TMEM192Q8IY95 271 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PDIK1LQ8N165 341 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 NAT16Q8N8M0 369 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 TMC2Q8TDI7 906 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 FOXJ1Q92949 421 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 FAF2Q96CS3 445 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 CYP3A43Q9HB55 503 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 TMEM161AQ9NX61 479 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 ZSCAN32Q9NX65 697 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 BARX2Q9UMQ3 279 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PASKQ96RG2 1323 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 ADAMTSL3P82987 1691 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 SVILO95425 2214 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 H3BQ06 376 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 P4HA2O15460 535 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 CSDE1O75534 798 aaKnown RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 GSNP06396 782 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 KLK3P07288 261 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 DDX6P26196 483 aaKnown RBP eCLIP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 PEX5P50542 639 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 ANXA11P50995 505 aaKnown RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 KRBA2Q6ZNG9 492 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 HDXQ7Z353 690 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 C4orf19Q8IY42 314 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 CALR3Q96L12 384 aaKnown RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 C8orf33Q9H7E9 229 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-218ENST00000640036 MRGBPQ9NV56 204 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 ARHGAP26Q9UNA1 814 aa5.21□□□□□ -1.58
SCN1A-218ENST00000640036 CRYL1Q9Y2S2 319 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms